Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PSO063G6236 Papaver somniferum HOM05D002303 ORTHO05D304120 8.5e-61 236.9 125 100.0
PSO063G5744 Papaver somniferum HOM05D002303 ORTHO05D006504 4.2e-44 181.4 113 87.6
PSO832G3043 Papaver somniferum HOM05D002303 ORTHO05D006504 9.4e-44 180.3 113 86.7
PSO782G3482 Papaver somniferum HOM05D002303 ORTHO05D006504 2.0e-30 136.0 114 70.2
TAR374G1747 Trochodendron aralioides HOM05D002303 ORTHO05D006504 3.5e-30 135.2 119 62.2
Aqoxy3G02980 Aquilegia oxysepala HOM05D002303 ORTHO05D006504 1.3e-29 133.3 115 64.3
FAN07G1287 Fragaria x ananassa HOM05D002303 ORTHO05D006504 6.1e-27 124.4 118 61.9
Potri.010G064600 Populus trichocarpa HOM05D002303 ORTHO05D006504 1.8e-26 122.9 114 58.8
MD16G1092300 Malus domestica HOM05D002303 ORTHO05D006504 2.3e-26 122.5 103 66.0
FAN12G1541 Fragaria x ananassa HOM05D002303 ORTHO05D006504 3.0e-26 122.1 119 59.7
Rhsim07G0188400 Rhododendron simsii HOM05D002303 ORTHO05D006504 3.0e-26 122.1 113 57.5
FvH4_4g34510 Fragaria vesca HOM05D002303 ORTHO05D006504 5.2e-26 121.3 119 60.5
Prupe.1G254100 Prunus persica HOM05D002303 ORTHO05D006504 1.5e-25 119.8 115 60.9
Sabra10G0042400 Salix brachista HOM05D002303 ORTHO05D006504 2.0e-25 119.4 114 57.0
Nn4g22801 Nelumbo nucifera HOM05D002303 ORTHO05D006504 3.4e-25 118.6 120 55.8
Ciclev10031042m.g Citrus clementina HOM05D002303 ORTHO05D006504 5.8e-25 117.9 115 60.0
RcHm_v2.0_Chr4g0443891 Rosa chinensis HOM05D002303 ORTHO05D006504 5.8e-25 117.9 118 59.3
COL.COLO4_06925 Corchorus olitorius HOM05D002303 ORTHO05D006504 7.5e-25 117.5 117 58.1
Lj3A1052T30 Lonicera japonica HOM05D002303 ORTHO05D006504 7.5e-25 117.5 101 63.4
Cfa009142 Carpinus fangiana HOM05D002303 ORTHO05D006504 1.3e-24 116.7 115 60.0
Ciclev10019296m.g Citrus clementina HOM05D002303 ORTHO05D006504 1.3e-24 116.7 115 60.0
Haze_12176 Corylus avellana HOM05D002303 ORTHO05D006504 1.7e-24 116.3 115 60.0
TWI36G0505 Tripterygium wilfordii HOM05D002303 ORTHO05D006504 2.2e-24 115.9 112 58.9
Sabra08G0132000 Salix brachista HOM05D002303 ORTHO05D006504 2.9e-24 115.5 115 57.4
MBI04_g22061_MAGBIO Magnolia biondii HOM05D002303 ORTHO05D006504 3.7e-24 115.2 101 63.4
vmacro16253 Vaccinium macrocarpon HOM05D002303 ORTHO05D006504 3.7e-24 115.2 116 53.4
Oeu003451.1 Olea europaea HOM05D002303 ORTHO05D006504 4.9e-24 114.8 115 58.3
Potri.008G172800 Populus trichocarpa HOM05D002303 ORTHO05D006504 8.3e-24 114.0 116 56.0
MBI03_g10297_MAGBIO Magnolia biondii HOM05D002303 ORTHO05D006504 3.2e-23 112.1 101 61.4
QL03p061244 Quercus lobata HOM05D002303 ORTHO05D006504 3.2e-23 112.1 116 55.2
Duzib168G1309 Durio zibethinus HOM05D002303 ORTHO05D006504 4.1e-23 111.7 119 55.5
ECA246G1022 Erigeron canadensis HOM05D002303 ORTHO05D006504 4.1e-23 111.7 104 57.7
MSTRG.7897 Avicennia marina HOM05D002303 ORTHO05D006504 5.4e-23 111.3 103 64.1
CANSAT64G0961 Cannabis sativa HOM05D002303 ORTHO05D006504 7.0e-23 110.9 116 56.0
QL07p042264 Quercus lobata HOM05D002303 ORTHO05D006504 7.0e-23 110.9 115 53.9
Hund05993 Selenicereus undatus HOM05D002303 ORTHO05D006504 7.0e-23 110.9 114 56.1
Dinv24860 Davidia involucrata HOM05D002303 ORTHO05D006504 9.2e-23 110.5 106 61.3
Manes.12G029100 Manihot esculenta HOM05D002303 ORTHO05D006504 9.2e-23 110.5 117 54.7
PGR102G1063 Punica granatum HOM05D002303 ORTHO05D006504 9.2e-23 110.5 102 56.9
Cc00_g31710 Coffea canephora HOM05D002303 ORTHO05D006504 1.2e-22 110.2 122 51.6
Gohir.A05G001900 Gossypium hirsutum HOM05D002303 ORTHO05D006504 1.2e-22 110.2 113 55.8
Thecc.09G187500 Theobroma cacao HOM05D002303 ORTHO05D006504 1.2e-22 110.2 119 54.6
TWI18G0905 Tripterygium wilfordii HOM05D002303 ORTHO05D006504 1.2e-22 110.2 113 56.6
CSS0022544 Camellia sinensis var. sinensis HOM05D002303 ORTHO05D006504 2.0e-22 109.4 114 54.4
AUR62005376 Chenopodium quinoa HOM05D002303 ORTHO05D006504 2.0e-22 109.4 113 58.4
Gohir.D05G002200 Gossypium hirsutum HOM05D002303 ORTHO05D006504 2.0e-22 109.4 113 55.8
Gorai.009G002100 Gossypium raimondii HOM05D002303 ORTHO05D006504 2.0e-22 109.4 113 55.8
Solyc02g078970.4 Solanum lycopersicum HOM05D002303 ORTHO05D006504 2.0e-22 109.4 103 59.2
SGA_v2.0_scaffold165G38248 Striga asiatica HOM05D002303 ORTHO05D006504 2.7e-22 109.0 114 57.0
ATR0810G235 Amborella trichopoda HOM05D002303 ORTHO05D006504 3.5e-22 108.6 112 53.6
Gohir.D07G176600 Gossypium hirsutum HOM05D002303 ORTHO05D006504 3.5e-22 108.6 118 54.2
ATR0810G196 Amborella trichopoda HOM05D002303 ORTHO05D006504 4.6e-22 108.2 112 54.5
Oeu044823.1 Olea europaea HOM05D002303 ORTHO05D006504 4.6e-22 108.2 105 60.0
Sc04g0009110 Simmondsia chinensis HOM05D002303 ORTHO05D006504 4.6e-22 108.2 103 58.3
Sopen02g023780 Solanum pennellii HOM05D002303 ORTHO05D006504 4.6e-22 108.2 104 58.7
PGSC0003DMG400022364 Solanum tuberosum HOM05D002303 ORTHO05D006504 4.6e-22 108.2 104 58.7
Lsat_1_v5_gn_9_45920 Lactuca sativa HOM05D002303 ORTHO05D006504 7.8e-22 107.5 104 58.7
SEGI_17343 Sequoiadendron giganteum HOM05D002303 ORTHO05D006504 7.8e-22 107.5 103 57.3
TAR680G0002 Trochodendron aralioides HOM05D002303 ORTHO05D006504 7.8e-22 107.5 125 49.6
MD13G1091700 Malus domestica HOM05D002303 ORTHO05D006504 1.0e-21 107.1 117 54.7
Nitab4.5_0001170g0230 Nicotiana tabacum HOM05D002303 ORTHO05D006504 1.0e-21 107.1 103 61.2
Nitab4.5_0003676g0010 Nicotiana tabacum HOM05D002303 ORTHO05D006504 1.0e-21 107.1 103 61.2
SalBow2G0957 Salvia bowleyana HOM05D002303 ORTHO05D006504 1.3e-21 106.7 103 56.3
PGSC0003DMG402030529 Solanum tuberosum HOM05D002303 ORTHO05D006504 1.3e-21 106.7 103 58.3
Ah.03g132680 Amaranthus hybridus HOM05D002303 ORTHO05D006504 1.7e-21 106.3 114 56.1
AUR62014039 Chenopodium quinoa HOM05D002303 ORTHO05D006504 1.7e-21 106.3 113 57.5
Migut.L01412 Erythranthe guttata HOM05D002303 ORTHO05D006504 1.7e-21 106.3 104 60.6
Gorai.001G197400 Gossypium raimondii HOM05D002303 ORTHO05D006504 1.7e-21 106.3 106 56.6
Lj5g0024759 Lotus japonicus HOM05D002303 ORTHO05D006504 2.3e-21 105.9 104 52.9
Phvul.007G134200 Phaseolus vulgaris HOM05D002303 ORTHO05D006504 2.3e-21 105.9 109 54.1
Actinidia13510 Actinidia chinensis HOM05D002303 ORTHO05D006504 3.0e-21 105.5 101 59.4
CiPaw.06G072200 Carya illinoinensis HOM05D002303 ORTHO05D006504 5.0e-21 104.8 103 58.3
Hma1.2p1_0867F.1_g230190 Hydrangea macrophylla HOM05D002303 ORTHO05D006504 1.5e-20 103.2 104 54.8
Gohir.A07G170300 Gossypium hirsutum HOM05D002303 ORTHO05D006504 3.3e-20 102.1 118 51.7
Peaxi162Scf00527g00063 Petunia axillaris HOM05D002303 ORTHO05D006504 3.3e-20 102.1 101 59.4
EL10Ac6g13671 Beta vulgaris HOM05D002303 ORTHO05D006504 5.6e-20 101.3 120 51.7
Ca_09780_v3 Cicer arietinum L. HOM05D002303 ORTHO05D006504 5.6e-20 101.3 104 54.8
VMungo0720G0741 Vigna mungo HOM05D002303 ORTHO05D006504 9.5e-20 100.5 107 52.3
Thhalv10007215m.g Eutrema salsugineum HOM05D002303 ORTHO05D006504 1.2e-19 100.1 112 52.7
Glyma.20G198200 Glycine max HOM05D002303 ORTHO05D006504 1.2e-19 100.1 102 52.9
Actinidia15045 Actinidia chinensis HOM05D002303 ORTHO05D006504 1.6e-19 99.8 110 53.6
Glyma.10G192200 Glycine max HOM05D002303 ORTHO05D006504 2.8e-19 99.0 71 69.0
Psat6g141280 Pisum sativum HOM05D002303 ORTHO05D006504 2.8e-19 99.0 74 64.9
TPR.G18556 Trifolium pratense HOM05D002303 ORTHO05D006504 2.8e-19 99.0 74 64.9
Mapoly0001s0085 Marchantia polymorpha HOM05D002303 ORTHO05D006504 4.7e-19 98.2 108 53.7
AL1G21402 Arabidopsis lyrata HOM05D002303 ORTHO05D006504 6.2e-19 97.8 102 55.9
DCAR_007090 Daucus carota HOM05D002303 ORTHO05D006504 6.2e-19 97.8 101 55.4
Medtr1g072740 Medicago truncatula HOM05D002303 ORTHO05D006504 6.2e-19 97.8 107 53.3
HPP92_008340 Vanilla planifolia HOM05D002303 ORTHO05D006504 6.2e-19 97.8 123 51.2
Carub.0001s1002 Capsella rubella HOM05D002303 ORTHO05D006504 8.0e-19 97.4 114 50.9
Eucgr.B03345 Eucalyptus grandis HOM05D002303 ORTHO05D006504 1.4e-18 96.7 71 66.2
arahy.Tifrunner.gnm1.ann1.5RAP3T Arachis hypogaea HOM05D002303 ORTHO05D006504 1.8e-18 96.3 74 63.5
ClCG05G025310 Citrullus lanatus HOM05D002303 ORTHO05D006504 5.2e-18 94.7 115 50.4
Lalb_Chr02g0150771 Lupinus albus HOM05D002303 ORTHO05D006504 5.2e-18 94.7 119 47.9
Hma1.2p1_0867F.1_g230200 Hydrangea macrophylla HOM05D002303 ORTHO05D006504 6.8e-18 94.4 104 51.9
Sp1g09240 Schrenkiella parvula HOM05D002303 ORTHO05D006504 6.8e-18 94.4 112 50.9
CSS0020077 Camellia sinensis var. sinensis HOM05D002303 ORTHO05D006504 2.0e-17 92.8 113 51.3
Medtr4g102520 Medicago truncatula HOM05D002303 ORTHO05D006504 2.0e-17 92.8 107 49.5
arahy.Tifrunner.gnm1.ann1.FDC534 Arachis hypogaea HOM05D002303 ORTHO05D006504 5.8e-17 91.3 117 47.9
BcaC05g24865 Brassica carinata HOM05D002303 ORTHO05D006504 1.3e-16 90.1 100 54.0
C05p08850 Brassica napus HOM05D002303 ORTHO05D006504 1.3e-16 90.1 100 54.0
BolC5t29633H Brassica oleracea HOM05D002303 ORTHO05D006504 1.3e-16 90.1 100 54.0
Pp3c5_27650 Physcomitrium patens HOM05D002303 ORTHO05D006504 1.3e-16 90.1 110 51.8
BcaC05g24944 Brassica carinata HOM05D002303 ORTHO05D006504 2.2e-16 89.4 100 53.0
A06p07370 Brassica napus HOM05D002303 ORTHO05D006504 2.9e-16 89.0 100 53.0
BraA06t23941Z Brassica rapa HOM05D002303 ORTHO05D006504 2.9e-16 89.0 100 53.0
CDE10G0655 Ceratophyllum demersum HOM05D002303 ORTHO05D006504 2.9e-16 89.0 101 52.5
Sed0003805 Sechium edule HOM05D002303 ORTHO05D006504 4.9e-16 88.2 115 48.7
unitig_26.g10342 Utricularia gibba HOM05D002303 ORTHO05D006504 6.4e-16 87.8 103 50.5
Os03g0397500 Oryza sativa ssp. japonica HOM05D002303 ORTHO05D006504 8.3e-16 87.4 101 50.5
CDE10G0556 Ceratophyllum demersum HOM05D002303 ORTHO05D006504 1.1e-15 87.0 101 52.5
SGA_v2.0_scaffold8G04222 Striga asiatica HOM05D002303 ORTHO05D006504 1.1e-15 87.0 103 51.5
Zm00001eb019350 Zea mays HOM05D002303 ORTHO05D006504 1.1e-15 87.0 100 51.0
HanXRQChr15g0490111 Helianthus annuus HOM05D002303 ORTHO05D006504 1.9e-15 86.3 107 50.5
Sp4g02400 Schrenkiella parvula HOM05D002303 ORTHO05D006504 2.4e-15 85.9 104 50.0
AT1G10580 Arabidopsis thaliana HOM05D002303 ORTHO05D006504 5.4e-15 84.7 102 52.0
Sed0001575 Sechium edule HOM05D002303 ORTHO05D006504 5.4e-15 84.7 117 47.0
CSS0001865 Camellia sinensis var. sinensis HOM05D002303 ORTHO05D006504 7.0e-15 84.3 114 48.2
CSS0030675 Camellia sinensis var. sinensis HOM05D002303 ORTHO05D006504 7.0e-15 84.3 114 48.2
Zm00001eb392750 Zea mays HOM05D002303 ORTHO05D006504 9.2e-15 84.0 103 49.5
AagrBONN_evm.TU.Sc2ySwM_228.161 Anthoceros agrestis HOM05D002303 ORTHO05D006504 2.1e-14 82.8 84 56.0
GSVIVG01020240001 Vitis vinifera HOM05D002303 ORTHO05D006504 6.0e-14 81.3 67 65.7
CARHR010740 Cardamine hirsuta HOM05D002303 ORTHO05D006504 7.8e-14 80.9 112 44.6
Cc01_g07870 Coffea canephora HOM05D002303 ORTHO05D006504 8.6e-13 77.4 122 38.5
Aa31LG1G4340 Aethionema arabicum HOM05D002303 ORTHO05D006504 4.7e-11 71.6 103 45.6
Atru.chr11.2018 Acer truncatum HOM05D002303 ORTHO05D006504 1.4e-10 70.1 103 44.7
SMO361G0390 Selaginella moellendorffii HOM05D002303 ORTHO05D006504 4.0e-10 68.6 111 38.7
MELO3C011999.2 Cucumis melo HOM05D002303 ORTHO05D006504 6.8e-10 67.8 115 42.6
CsaV3_5G031590 Cucumis sativus L. HOM05D002303 ORTHO05D006504 6.8e-10 67.8 115 42.6
Cpa.g.sc292.8 Carica papaya HOM05D002303 ORTHO05D006504 4.4e-09 65.1 113 39.8
THA.LOC104823641 Tarenaya hassleriana HOM05D002303 ORTHO05D006504 4.9e-08 61.6 112 38.4
CBR_g42136 Chara braunii HOM05D002303 ORTHO05D006504 2.4e-07 59.3 81 45.7


User provided reference genes

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