Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PSO063G6006 Papaver somniferum HOM05D001082 ORTHO05D005120 0.0e+00 3030.0 1509 100.0
PSO782G2901 Papaver somniferum HOM05D001082 ORTHO05D005120 0.0e+00 2927.1 1509 97.1
TAR629G2955 Trochodendron aralioides HOM05D001082 ORTHO05D005120 0.0e+00 2090.1 1513 68.8
Aqoxy5G03217 Aquilegia oxysepala HOM05D001082 ORTHO05D005120 0.0e+00 1904.8 1517 63.6
Dinv24538 Davidia involucrata HOM05D001082 ORTHO05D005120 0.0e+00 1903.6 1518 62.7
GSVIVG01015912001 Vitis vinifera HOM05D001082 ORTHO05D005120 0.0e+00 1889.4 1509 62.3
Nn3g20376 Nelumbo nucifera HOM05D001082 ORTHO05D005120 0.0e+00 1870.1 1510 62.3
vmacro01638 Vaccinium macrocarpon HOM05D001082 ORTHO05D005120 0.0e+00 1803.9 1536 58.4
CSS0006928 Camellia sinensis var. sinensis HOM05D001082 ORTHO05D005120 0.0e+00 1798.1 1542 58.8
Actinidia11712 Actinidia chinensis HOM05D001082 ORTHO05D005120 0.0e+00 1768.8 1460 60.2
Manes.15G096100 Manihot esculenta HOM05D001082 ORTHO05D005120 0.0e+00 1758.0 1509 58.4
Potri.001G078600 Populus trichocarpa HOM05D001082 ORTHO05D005120 0.0e+00 1745.3 1516 58.0
Ciclev10000026m.g Citrus clementina HOM05D001082 ORTHO05D005120 0.0e+00 1744.9 1503 59.1
Cfa008545 Carpinus fangiana HOM05D001082 ORTHO05D005120 0.0e+00 1724.1 1508 57.9
CiPaw.02G126600 Carya illinoinensis HOM05D001082 ORTHO05D005120 0.0e+00 1704.9 1514 57.3
Rhsim11G0112000 Rhododendron simsii HOM05D001082 ORTHO05D005120 0.0e+00 1694.5 1517 56.3
COL.COLO4_31206 Corchorus olitorius HOM05D001082 ORTHO05D005120 0.0e+00 1683.7 1509 57.5
MD10G1009800 Malus domestica HOM05D001082 ORTHO05D005120 0.0e+00 1681.8 1508 56.8
QL10p065261 Quercus lobata HOM05D001082 ORTHO05D005120 0.0e+00 1667.1 1545 56.3
RcHm_v2.0_Chr2g0126921 Rosa chinensis HOM05D001082 ORTHO05D005120 0.0e+00 1662.1 1522 56.6
TWI14G0841 Tripterygium wilfordii HOM05D001082 ORTHO05D005120 0.0e+00 1661.4 1516 56.1
Thecc.06G064200 Theobroma cacao HOM05D001082 ORTHO05D005120 0.0e+00 1657.5 1505 57.1
CANSAT78G0369 Cannabis sativa HOM05D001082 ORTHO05D005120 0.0e+00 1657.1 1515 56.4
Lj5C310G5 Lonicera japonica HOM05D001082 ORTHO05D005120 0.0e+00 1644.0 1509 56.3
Sabra01G0055900 Salix brachista HOM05D001082 ORTHO05D005120 0.0e+00 1634.8 1621 52.7
Prupe.5G022000 Prunus persica HOM05D001082 ORTHO05D005120 0.0e+00 1619.4 1512 55.2
Gorai.007G307100 Gossypium raimondii HOM05D001082 ORTHO05D005120 0.0e+00 1614.0 1508 56.5
FvH4_6g26400 Fragaria vesca HOM05D001082 ORTHO05D005120 0.0e+00 1610.1 1503 55.6
FAN05G0906 Fragaria x ananassa HOM05D001082 ORTHO05D005120 0.0e+00 1604.0 1523 55.2
Sopen01g044980 Solanum pennellii HOM05D001082 ORTHO05D005120 0.0e+00 1597.0 1507 53.9
Glyma.13G142200 Glycine max HOM05D001082 ORTHO05D005120 0.0e+00 1587.8 1515 54.5
MSTRG.5181 Avicennia marina HOM05D001082 ORTHO05D005120 0.0e+00 1587.0 1506 53.2
Gohir.D11G284200 Gossypium hirsutum HOM05D001082 ORTHO05D005120 0.0e+00 1586.2 1438 57.2
Ca_11506_v3 Cicer arietinum L. HOM05D001082 ORTHO05D005120 0.0e+00 1578.9 1507 54.1
Migut.N00999 Erythranthe guttata HOM05D001082 ORTHO05D005120 0.0e+00 1578.5 1503 53.3
Peaxi162Scf00194g00732 Petunia axillaris HOM05D001082 ORTHO05D005120 0.0e+00 1574.7 1537 52.8
DCAR_003267 Daucus carota HOM05D001082 ORTHO05D005120 0.0e+00 1573.1 1517 54.4
Medtr1g063180 Medicago truncatula HOM05D001082 ORTHO05D005120 0.0e+00 1573.1 1508 53.4
TPR.G11274 Trifolium pratense HOM05D001082 ORTHO05D005120 0.0e+00 1568.9 1507 54.0
Psat6g073960 Pisum sativum HOM05D001082 ORTHO05D005120 0.0e+00 1568.1 1507 54.0
SalBow1G7939 Salvia bowleyana HOM05D001082 ORTHO05D005120 0.0e+00 1561.6 1531 51.9
Lalb_Chr21g0315021 Lupinus albus HOM05D001082 ORTHO05D005120 0.0e+00 1561.2 1510 54.6
arahy.Tifrunner.gnm1.ann1.922X53 Arachis hypogaea HOM05D001082 ORTHO05D005120 0.0e+00 1557.3 1528 53.4
arahy.Tifrunner.gnm1.ann1.Y1BA5Y Arachis hypogaea HOM05D001082 ORTHO05D005120 0.0e+00 1557.3 1528 53.4
Phvul.007G218900 Phaseolus vulgaris HOM05D001082 ORTHO05D005120 0.0e+00 1555.0 1514 53.3
Nitab4.5_0000399g0040 Nicotiana tabacum HOM05D001082 ORTHO05D005120 0.0e+00 1554.3 1508 53.1
Glyma.10G055100 Glycine max HOM05D001082 ORTHO05D005120 0.0e+00 1552.7 1519 53.6
Sc07g0003370 Simmondsia chinensis HOM05D001082 ORTHO05D005120 0.0e+00 1537.7 1511 52.7
PGR042G2652 Punica granatum HOM05D001082 ORTHO05D005120 0.0e+00 1537.3 1509 53.6
Lj5g0014962 Lotus japonicus HOM05D001082 ORTHO05D005120 0.0e+00 1530.4 1501 53.0
HanXRQChr14g0452101 Helianthus annuus HOM05D001082 ORTHO05D005120 0.0e+00 1528.8 1510 52.8
RcHm_v2.0_Chr4g0402211 Rosa chinensis HOM05D001082 ORTHO05D005120 0.0e+00 1525.8 1507 53.6
ATR0810G183 Amborella trichopoda HOM05D001082 ORTHO05D005120 0.0e+00 1518.8 1507 52.0
MELO3C020407.2 Cucumis melo HOM05D001082 ORTHO05D005120 0.0e+00 1510.4 1513 51.3
ECA238G2349 Erigeron canadensis HOM05D001082 ORTHO05D005120 0.0e+00 1505.0 1505 51.2
Sed0025950 Sechium edule HOM05D001082 ORTHO05D005120 0.0e+00 1498.4 1510 51.1
EL10Ac6g13928 Beta vulgaris HOM05D001082 ORTHO05D005120 0.0e+00 1494.2 1498 51.3
Lsat_1_v5_gn_7_54700 Lactuca sativa HOM05D001082 ORTHO05D005120 0.0e+00 1493.0 1505 51.6
CsaV3_2G011850 Cucumis sativus L. HOM05D001082 ORTHO05D005120 0.0e+00 1488.8 1510 50.6
Duzib235G1067 Durio zibethinus HOM05D001082 ORTHO05D005120 0.0e+00 1478.8 1289 58.0
AUR62042820 Chenopodium quinoa HOM05D001082 ORTHO05D005120 0.0e+00 1465.7 1537 49.9
THA.LOC104806485 Tarenaya hassleriana HOM05D001082 ORTHO05D005120 0.0e+00 1442.2 1513 50.1
AL1G47790 Arabidopsis lyrata HOM05D001082 ORTHO05D005120 0.0e+00 1440.2 1517 50.6
AT1G33410 Arabidopsis thaliana HOM05D001082 ORTHO05D005120 0.0e+00 1427.2 1520 50.2
Haze_11087 Corylus avellana HOM05D001082 ORTHO05D005120 0.0e+00 1418.7 1202 60.4
Sp1g28860 Schrenkiella parvula HOM05D001082 ORTHO05D005120 0.0e+00 1413.7 1519 49.7
Ah.03g136660 Amaranthus hybridus HOM05D001082 ORTHO05D005120 0.0e+00 1410.6 1462 50.8
SGA_v2.0_scaffold8G04471 Striga asiatica HOM05D001082 ORTHO05D005120 0.0e+00 1405.6 1503 49.2
Gohir.A11G274000 Gossypium hirsutum HOM05D001082 ORTHO05D005120 0.0e+00 1400.6 1244 57.8
BcaB03g13701 Brassica carinata HOM05D001082 ORTHO05D005120 0.0e+00 1399.0 1512 49.6
CARHR032850 Cardamine hirsuta HOM05D001082 ORTHO05D005120 0.0e+00 1389.8 1516 49.3
BcaC05g27806 Brassica carinata HOM05D001082 ORTHO05D005120 0.0e+00 1384.4 1516 49.1
Thhalv10006552m.g Eutrema salsugineum HOM05D001082 ORTHO05D005120 0.0e+00 1380.9 1522 49.3
BolC5t32536H Brassica oleracea HOM05D001082 ORTHO05D005120 0.0e+00 1379.0 1519 48.9
BraA05t21326Z Brassica rapa HOM05D001082 ORTHO05D005120 0.0e+00 1370.5 1522 48.9
C05p38080 Brassica napus HOM05D001082 ORTHO05D005120 0.0e+00 1369.0 1548 48.1
A05p24320 Brassica napus HOM05D001082 ORTHO05D005120 0.0e+00 1364.0 1549 48.2
Aa31LG6G7920 Aethionema arabicum HOM05D001082 ORTHO05D005120 0.0e+00 1359.0 1521 49.0
AUR62032513 Chenopodium quinoa HOM05D001082 ORTHO05D005120 0.0e+00 1341.6 1762 42.9
arahy.Tifrunner.gnm1.ann1.CLUS6A Arachis hypogaea HOM05D001082 ORTHO05D005120 0.0e+00 1320.1 1534 48.3
Nitab4.5_0004090g0140 Nicotiana tabacum HOM05D001082 ORTHO05D005120 0.0e+00 1318.5 1392 50.4
Zm00001eb232140 Zea mays HOM05D001082 ORTHO05D005120 0.0e+00 1308.9 1517 47.0
Lj3g0009617 Lotus japonicus HOM05D001082 ORTHO05D005120 0.0e+00 1285.4 1515 47.3
ECA233G1839 Erigeron canadensis HOM05D001082 ORTHO05D005120 0.0e+00 1273.5 1557 45.2
Hma1.2p1_0052F.1_g030150 Hydrangea macrophylla HOM05D001082 ORTHO05D005120 0.0e+00 1269.6 1051 61.7
Eucgr.G00034 Eucalyptus grandis HOM05D001082 ORTHO05D005120 0.0e+00 1266.9 1162 56.5
Carub.0001s3160 Capsella rubella HOM05D001082 ORTHO05D005120 0.0e+00 1254.6 1294 51.4
ECA233G1970 Erigeron canadensis HOM05D001082 ORTHO05D005120 0.0e+00 1245.7 1542 44.6
Oeu010602.3 Olea europaea HOM05D001082 ORTHO05D005120 0.0e+00 1238.8 1133 56.2
Solyc01g102540.3 Solanum lycopersicum HOM05D001082 ORTHO05D005120 0.0e+00 1232.2 1102 57.1
MD05G1161100 Malus domestica HOM05D001082 ORTHO05D005120 0.0e+00 1159.1 1128 54.9
CAN.G1379.30 Capsicum annuum HOM05D001082 ORTHO05D005120 0.0e+00 1103.2 984 57.2
CDE01G0790 Ceratophyllum demersum HOM05D001082 ORTHO05D005120 4.9e-304 1048.5 1137 48.8
AagrBONN_evm.TU.Sc2ySwM_362.2782 Anthoceros agrestis HOM05D001082 ORTHO05D005120 1.1e-268 931.0 1539 37.7
SEGI_00916 Sequoiadendron giganteum HOM05D001082 ORTHO05D005120 2.1e-262 910.2 1144 43.7
Pp3c11_26590 Physcomitrium patens HOM05D001082 ORTHO05D005120 1.3e-259 901.0 1550 36.7
Mapoly0008s0081 Marchantia polymorpha HOM05D001082 ORTHO05D005120 5.5e-255 885.6 1547 36.3
ECA233G1393 Erigeron canadensis HOM05D001082 ORTHO05D005120 1.7e-219 767.7 975 42.1
SHI21156 Sapria himalayana HOM05D001082 ORTHO05D005120 7.8e-217 758.8 1025 42.6
Hma1.2p1_0052F.1_g030160 Hydrangea macrophylla HOM05D001082 ORTHO05D005120 1.5e-215 754.6 601 61.9
Atru.chr12.2422 Acer truncatum HOM05D001082 ORTHO05D005120 2.3e-213 747.3 591 64.0
SMO239G0052 Selaginella moellendorffii HOM05D001082 ORTHO05D005120 8.9e-213 745.3 1398 34.0
Atru.chr6.17 Acer truncatum HOM05D001082 ORTHO05D005120 2.8e-206 723.8 573 63.7
Atru.chr12.2421 Acer truncatum HOM05D001082 ORTHO05D005120 6.4e-203 712.6 641 56.3
BolC4t27268H Brassica oleracea HOM05D001082 ORTHO05D005120 1.7e-195 688.0 1019 40.9
C04p57470 Brassica napus HOM05D001082 ORTHO05D005120 1.3e-192 678.3 1026 40.7
BcaC02g08190 Brassica carinata HOM05D001082 ORTHO05D005120 1.7e-192 677.9 1025 40.8
VMungo0720G0635 Vigna mungo HOM05D001082 ORTHO05D000001 1.9e-178 631.3 572 56.5
ClCG06G008360 Citrullus lanatus HOM05D001082 ORTHO05D005120 1.1e-165 589.0 613 52.4
MD05G1162400 Malus domestica HOM05D001082 ORTHO05D005120 8.5e-139 499.6 478 55.2
SEGI_12765 Sequoiadendron giganteum HOM05D001082 ORTHO05D005120 7.9e-137 493.0 580 48.3
ECA233G2822 Erigeron canadensis HOM05D001082 ORTHO05D005120 2.3e-136 491.5 578 48.3
Oeu010603.1 Olea europaea HOM05D001082 ORTHO05D005120 3.9e-136 490.7 1038 33.4
unitig_22.g5791 Utricularia gibba HOM05D001082 ORTHO05D005120 1.1e-117 429.5 570 43.9
CBR_g55211 Chara braunii HOM05D000019 ORTHO05D000048 4.4e-111 407.5 1001 28.6
Cpa.g.sc21.217 Carica papaya HOM05D001082 ORTHO05D005120 2.7e-108 398.3 532 44.9
BcaC02g08126 Brassica carinata HOM05D001082 ORTHO05D005120 5.2e-104 384.0 504 43.1
Cpa.g.sc21.218 Carica papaya HOM05D001082 ORTHO05D005120 2.5e-90 338.6 302 58.9
C04p58080 Brassica napus HOM05D001082 ORTHO05D005120 7.3e-90 337.0 458 41.9
ClCG06G008350 Citrullus lanatus HOM05D001082 ORTHO05D005120 7.3e-90 337.0 318 51.9
unitig_22.g5790 Utricularia gibba HOM05D001082 ORTHO05D005120 4.0e-80 304.7 835 28.9
VMungo0720G1958 Vigna mungo HOM05D001082 ORTHO05D005120 6.8e-80 303.9 475 37.7
ClCG06G008340 Citrullus lanatus HOM05D001082 ORTHO05D005120 1.4e-77 296.2 539 32.7
CDE01G0761 Ceratophyllum demersum HOM05D001082 ORTHO05D005120 5.4e-77 294.3 328 43.9
Cpa.g.sc21.222 Carica papaya HOM05D001082 ORTHO05D005120 1.1e-74 286.6 277 50.9
Solyc01g102550.4 Solanum lycopersicum HOM05D001082 ORTHO05D005120 1.1e-74 286.6 305 46.9
SEGI_15028 Sequoiadendron giganteum HOM05D001082 ORTHO05D005120 3.1e-72 278.5 359 42.6
MD05G1161300 Malus domestica HOM05D001082 ORTHO05D005120 2.9e-70 271.9 412 40.8
MD08G1158600 Malus domestica HOM05D001082 ORTHO05D005120 2.9e-70 271.9 456 39.5
BolC4t27335H Brassica oleracea HOM05D001082 ORTHO05D005120 7.1e-69 267.3 389 41.4
TAR339G0004 Trochodendron aralioides HOM05D001082 ORTHO05D005120 8.7e-67 260.4 249 52.2
CAN.G1379.29 Capsicum annuum HOM05D001082 ORTHO05D005120 1.1e-64 253.4 473 33.6
FAN09G1182 Fragaria x ananassa HOM05D001082 ORTHO05D005120 3.1e-64 251.9 212 57.5
Hma1.2p1_0052F.1_g030140 Hydrangea macrophylla HOM05D001082 ORTHO05D005120 9.9e-63 246.9 217 55.3
Os02g0142500 Oryza sativa ssp. japonica HOM05D001082 ORTHO05D005120 9.9e-63 246.9 194 60.8
SEGI_08839 Sequoiadendron giganteum HOM05D001082 ORTHO05D005120 1.2e-60 240.0 299 46.2
MD05G1162300 Malus domestica HOM05D004954 ORTHO05D006267 6.2e-57 227.6 300 44.7
SEGI_20053 Sequoiadendron giganteum HOM05D001082 ORTHO05D005120 2.8e-49 202.2 324 36.4
HPP92_015361 Vanilla planifolia HOM05D001082 ORTHO05D005120 2.0e-47 196.1 391 36.8
MD08G1158700 Malus domestica HOM05D001082 ORTHO05D005120 1.9e-45 189.5 282 40.1
Psat4g135880 Pisum sativum HOM05D001082 ORTHO05D005120 3.9e-43 181.8 172 52.3
VMungo0720G0600 Vigna mungo HOM05D001082 ORTHO05D010195 6.7e-43 181.0 183 52.5
MD10G1160000 Malus domestica HOM05D001082 ORTHO05D005120 1.3e-41 176.8 198 50.0
ClCG06G008370 Citrullus lanatus HOM05D001082 ORTHO05D005120 4.1e-40 171.8 131 61.1
MD05G1063300 Malus domestica HOM05D001082 ORTHO05D005120 2.2e-38 166.0 187 50.3
Cpa.g.sc21.215 Carica papaya HOM05D001082 ORTHO05D005120 2.9e-38 165.6 124 65.3
Os02g0142950 Oryza sativa ssp. japonica HOM05D001082 ORTHO05D005120 8.4e-38 164.1 117 62.4
SHI21155 Sapria himalayana HOM05D001082 ORTHO05D005120 1.3e-35 156.8 201 42.8
VMungo0720G2272 Vigna mungo HOM05D001082 ORTHO05D005120 2.5e-34 152.5 175 48.6
BcaC07g37555 Brassica carinata HOM05D001082 ORTHO05D005120 4.5e-31 141.7 109 65.1
Lsat_1_v5_gn_8_801 Lactuca sativa HOM05D000349 ORTHO05D005120 1.0e-30 140.6 116 62.1
VMungo0720G0348 Vigna mungo HOM05D001082 ORTHO05D005120 6.1e-28 131.3 147 46.9
GSVIVG01013013001 Vitis vinifera HOM05D001082 ORTHO05D005120 2.4e-24 119.4 106 52.8
Cre07.g324000 Chlamydomonas reinhardtii HOM05D001082 ORTHO05D005120 2.8e-17 95.9 676 21.6
MD07G1280900 Malus domestica HOM05D001082 ORTHO05D005120 6.3e-17 94.7 95 53.7
MD00G1034800 Malus domestica HOM05D001082 ORTHO05D005120 3.1e-16 92.4 95 52.6
MCO16G497 Micromonas commoda HOM05D001082 ORTHO05D005120 3.0e-11 75.9 193 33.2
MBI12_g24277_MAGBIO Magnolia biondii HOM05D004967 ORTHO05D006146 1.1e-10 73.9 61 57.4
A08p08590 Brassica napus HOM05D001082 ORTHO05D005120 2.6e-10 72.8 84 48.8
BolC8t47896H Brassica oleracea HOM05D001082 ORTHO05D039247 5.7e-10 71.6 66 50.0
Nitab4.5_0004090g0150 Nicotiana tabacum HOM05D001082 ORTHO05D005120 5.3e-08 65.1 42 71.4
BolC8t47897H Brassica oleracea HOM05D001082 ORTHO05D005120 1.0e-06 60.8 38 76.3
BcaB06g28204 Brassica carinata HOM05D001082 ORTHO05D005120 5.0e-06 58.5 141 31.9


User provided reference genes

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