Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PSO063G4104 Papaver somniferum HOM05D007098 ORTHO05D008793 6.0e-228 794.7 707 100.0
PSO782G3618 Papaver somniferum HOM05D007098 ORTHO05D008793 3.2e-221 772.3 717 97.5
Nn5g28372 Nelumbo nucifera HOM05D007098 ORTHO05D008793 9.9e-106 388.7 710 71.8
MBI11_g46348_MAGBIO Magnolia biondii HOM05D007098 ORTHO05D008793 1.3e-102 378.3 698 71.5
Haze_07291 Corylus avellana HOM05D007098 ORTHO05D008793 5.1e-102 376.3 624 75.6
Hma1.2p1_0014F.1_g009950 Hydrangea macrophylla HOM05D007098 ORTHO05D008793 8.7e-102 375.6 667 72.7
Dinv11119 Davidia involucrata HOM05D002040 ORTHO05D002502 3.3e-101 373.6 719 66.3
Thecc.03G120500 Theobroma cacao HOM05D007098 ORTHO05D008793 1.2e-100 371.7 709 71.4
TAR371G0113 Trochodendron aralioides HOM05D007098 ORTHO05D008793 1.1e-99 368.6 705 70.5
EL10Ac7g18049 Beta vulgaris HOM05D007098 ORTHO05D008793 9.0e-99 365.5 662 73.3
MD06G1160200 Malus domestica HOM05D007098 ORTHO05D008793 2.6e-98 364.0 709 70.2
CiPaw.11G013600 Carya illinoinensis HOM05D007098 ORTHO05D008793 5.8e-98 362.8 618 76.1
GSVIVG01007576001 Vitis vinifera HOM05D007098 ORTHO05D008793 7.6e-98 362.5 701 71.0
ClCG03G003340 Citrullus lanatus HOM05D007098 ORTHO05D008793 2.2e-97 360.9 662 72.2
Gorai.001G062100 Gossypium raimondii HOM05D007098 ORTHO05D008793 1.9e-96 357.8 735 68.2
Manes.06G113500 Manihot esculenta HOM05D007098 ORTHO05D008793 4.2e-96 356.7 665 67.2
FAN13G2898 Fragaria x ananassa HOM05D007098 ORTHO05D008793 9.3e-96 355.5 666 72.5
Sed0010608 Sechium edule HOM05D007098 ORTHO05D008793 1.2e-95 355.1 697 69.0
QL10p005624 Quercus lobata HOM05D007098 ORTHO05D008793 2.7e-95 354.0 667 71.8
Ah.08g218330 Amaranthus hybridus HOM05D007098 ORTHO05D008793 4.6e-95 353.2 709 69.8
Gohir.D07G058600 Gossypium hirsutum HOM05D007098 ORTHO05D008793 6.0e-95 352.8 734 68.0
HanXRQChr09g0272771 Helianthus annuus HOM05D007098 ORTHO05D008793 7.8e-95 352.4 730 63.8
Gohir.A07G054300 Gossypium hirsutum HOM05D007098 ORTHO05D008793 1.0e-94 352.1 732 67.9
RcHm_v2.0_Chr7g0191671 Rosa chinensis HOM05D007098 ORTHO05D008793 3.9e-94 350.1 664 72.4
FvH4_5g07010 Fragaria vesca HOM05D007098 ORTHO05D008793 1.5e-93 348.2 621 75.0
CsaV3_1G009150 Cucumis sativus L. HOM05D007098 ORTHO05D008793 1.9e-93 347.8 622 70.9
SGA_v2.0_scaffold45G17096 Striga asiatica HOM05D006560 ORTHO05D008164 2.5e-93 347.4 717 62.3
arahy.Tifrunner.gnm1.ann1.RHK9HC Arachis hypogaea HOM05D007098 ORTHO05D008793 4.3e-93 346.7 727 67.1
FAN18G2243 Fragaria x ananassa HOM05D007098 ORTHO05D008793 4.3e-93 346.7 621 74.9
Cpa.g.sc4.42 Carica papaya HOM05D007098 ORTHO05D008793 7.3e-93 345.9 710 68.6
MSTRG.9703 Avicennia marina HOM05D007098 ORTHO05D008793 1.3e-92 345.1 659 70.6
CSS0030055 Camellia sinensis var. sinensis HOM05D007098 ORTHO05D008793 1.6e-92 344.7 315 57.1
arahy.Tifrunner.gnm1.ann1.PW5CDL Arachis hypogaea HOM05D007098 ORTHO05D008793 2.8e-92 344.0 727 67.3
Potri.012G091800 Populus trichocarpa HOM05D007098 ORTHO05D008793 6.2e-92 342.8 717 68.1
Cc04_g10690 Coffea canephora HOM05D007098 ORTHO05D008793 8.1e-92 342.4 672 70.1
Sabra12G0066500 Salix brachista HOM05D007098 ORTHO05D008793 8.1e-92 342.4 713 67.5
Ciclev10019054m.g Citrus clementina HOM05D007098 ORTHO05D008793 1.1e-91 342.0 664 70.5
Lj2g0008135 Lotus japonicus HOM05D007098 ORTHO05D008793 1.1e-91 342.0 712 68.0
Atru.chr9.986 Acer truncatum HOM05D007098 ORTHO05D008793 1.8e-91 341.3 705 68.8
FAN04G0983 Fragaria x ananassa HOM05D007098 ORTHO05D008793 3.8e-89 333.6 619 63.3
Dinv38489 Davidia involucrata HOM05D007098 ORTHO05D008793 8.4e-89 332.4 277 57.4
Cfa018906 Carpinus fangiana HOM05D007098 ORTHO05D008793 1.1e-88 332.0 564 78.9
Duzib205G2031 Durio zibethinus HOM05D007098 ORTHO05D008793 1.9e-88 331.3 702 68.5
TWI39G0887 Tripterygium wilfordii HOM05D007098 ORTHO05D008793 5.4e-88 329.7 623 72.7
CSS0038177 Camellia sinensis var. sinensis HOM05D007098 ORTHO05D008793 7.1e-88 329.3 602 72.8
Prupe.5G160200 Prunus persica HOM05D007098 ORTHO05D008793 1.2e-87 328.6 724 67.5
AUR62025750 Chenopodium quinoa HOM05D007098 ORTHO05D008793 2.7e-87 327.4 625 73.6
PGSC0003DMG400015232 Solanum tuberosum HOM05D007098 ORTHO05D008793 2.7e-87 327.4 697 67.3
AUR62001258 Chenopodium quinoa HOM05D007098 ORTHO05D008793 1.0e-86 325.5 621 74.9
Glyma.12G037500 Glycine max HOM05D007098 ORTHO05D008793 5.1e-86 323.2 658 69.5
Lalb_Chr10g0098821 Lupinus albus HOM05D007098 ORTHO05D008793 1.5e-85 321.6 671 69.3
Phvul.011G039200 Phaseolus vulgaris HOM05D007098 ORTHO05D008793 4.3e-85 320.1 733 65.3
Nitab4.5_0006717g0020 Nicotiana tabacum HOM05D007098 ORTHO05D008793 2.1e-84 317.8 346 51.2
Peaxi162Scf00089g00927 Petunia axillaris HOM05D007098 ORTHO05D008793 4.8e-84 316.6 708 67.2
vmacro19257 Vaccinium macrocarpon HOM05D007098 ORTHO05D008793 1.1e-83 315.5 574 76.1
MELO3C002322.2 Cucumis melo HOM05D007098 ORTHO05D008793 1.4e-83 315.1 704 66.1
CDE09G0597 Ceratophyllum demersum HOM05D007098 ORTHO05D008793 4.0e-83 313.5 699 67.4
Glyma.11G111200 Glycine max HOM05D007098 ORTHO05D008793 4.0e-83 313.5 718 66.2
Carub.0008s1032 Capsella rubella HOM05D007098 ORTHO05D008793 5.3e-83 313.2 619 71.2
Actinidia16202 Actinidia chinensis HOM05D007098 ORTHO05D008793 6.9e-83 312.8 702 66.2
Rhsim08G0182900 Rhododendron simsii HOM05D007098 ORTHO05D008793 6.9e-83 312.8 547 78.6
Aa31LG3G5960 Aethionema arabicum HOM05D007098 ORTHO05D008793 3.4e-82 310.5 623 71.6
Psat2g130240 Pisum sativum HOM05D007098 ORTHO05D008793 9.9e-82 308.9 647 69.9
CANSAT80G2237 Cannabis sativa HOM05D007098 ORTHO05D008793 1.3e-81 308.5 625 73.4
Thhalv10012796m.g Eutrema salsugineum HOM05D007098 ORTHO05D008793 6.4e-81 306.2 625 70.1
Nitab4.5_0001360g0150 Nicotiana tabacum HOM05D007098 ORTHO05D008793 3.2e-80 303.9 695 67.8
Medtr5g045490 Medicago truncatula HOM05D007098 ORTHO05D008793 3.5e-79 300.4 662 67.8
Lsat_1_v5_gn_4_78280 Lactuca sativa HOM05D007098 ORTHO05D008793 4.6e-79 300.1 709 62.6
Migut.D02039 Erythranthe guttata HOM05D007098 ORTHO05D008793 7.9e-79 299.3 710 64.9
Solyc03g111650.4 Solanum lycopersicum HOM05D007098 ORTHO05D008793 1.3e-78 298.5 347 48.1
arahy.Tifrunner.gnm1.ann1.L7HRZC Arachis hypogaea HOM05D007098 ORTHO05D008793 1.8e-78 298.1 385 46.2
ECA232G2468 Erigeron canadensis HOM05D001195 ORTHO05D001138 1.8e-78 298.1 303 53.1
SalBow1G0423 Salvia bowleyana HOM05D007098 ORTHO05D008793 1.8e-78 298.1 325 50.2
CARHR258300 Cardamine hirsuta HOM05D007098 ORTHO05D008793 2.3e-78 297.7 662 66.2
TPR.G24468 Trifolium pratense HOM05D007098 ORTHO05D008793 2.3e-78 297.7 615 70.9
THA.LOC104824999 Tarenaya hassleriana HOM05D007098 ORTHO05D008793 3.0e-78 297.4 708 62.0
Sopen03g030770 Solanum pennellii HOM05D007098 ORTHO05D008793 5.1e-78 296.6 693 67.0
ATR0824G168 Amborella trichopoda HOM05D007098 ORTHO05D008793 6.7e-78 296.2 718 64.1
Sp6g12370 Schrenkiella parvula HOM05D007098 ORTHO05D008793 1.1e-77 295.4 619 68.8
AT5G50280 Arabidopsis thaliana HOM05D007098 ORTHO05D008793 1.9e-77 294.7 702 65.4
BcaB01g02904 Brassica carinata HOM05D007098 ORTHO05D008793 3.3e-77 293.9 617 64.5
AL8G24320 Arabidopsis lyrata HOM05D007098 ORTHO05D008793 5.6e-77 293.1 667 65.8
BolC3t15668H Brassica oleracea HOM05D007098 ORTHO05D008793 3.7e-76 290.4 617 63.9
BcaC01g04822 Brassica carinata HOM05D007098 ORTHO05D008793 6.2e-76 289.7 617 64.3
A03p27750 Brassica napus HOM05D007098 ORTHO05D008793 1.1e-75 288.9 617 63.9
C03p33470 Brassica napus HOM05D007098 ORTHO05D008793 1.1e-75 288.9 617 64.0
BraA03t11986Z Brassica rapa HOM05D007098 ORTHO05D008793 9.0e-75 285.8 617 63.7
Hund21512 Selenicereus undatus HOM05D007098 ORTHO05D008793 3.4e-74 283.9 276 54.0
VMungo1127G2011 Vigna mungo HOM05D007098 ORTHO05D008793 2.9e-73 280.8 366 45.9
Lj5A101T108 Lonicera japonica HOM05D007098 ORTHO05D008793 4.6e-71 273.5 211 62.1
Eucgr.B00165 Eucalyptus grandis HOM05D007098 ORTHO05D008793 3.9e-70 270.4 502 83.1
Glyma.02G116500 Glycine max HOM05D007098 ORTHO05D008793 4.3e-69 266.9 617 69.4
Sc22g0003940 Simmondsia chinensis HOM05D007098 ORTHO05D008793 6.3e-68 263.1 672 65.2
VMungo1215G0824 Vigna mungo HOM05D007098 ORTHO05D008793 4.5e-66 256.9 317 44.2
Phvul.003G042600 Phaseolus vulgaris HOM05D007098 ORTHO05D008793 6.5e-65 253.1 270 48.1
Ca_04973_v3 Cicer arietinum L. HOM05D007098 ORTHO05D008793 3.0e-62 244.2 267 48.3
SEGI_05165 Sequoiadendron giganteum HOM05D007098 ORTHO05D008793 2.4e-51 208.0 203 48.8
HPP92_024236 Vanilla planifolia HOM05D007098 ORTHO05D008793 1.5e-50 205.3 159 63.5
CAN.G472.49 Capsicum annuum HOM05D007098 ORTHO05D008793 7.2e-48 196.4 140 65.0
Os05g0294600 Oryza sativa ssp. japonica HOM05D007098 ORTHO05D008793 8.0e-47 193.0 547 68.0
Glyma.01G059100 Glycine max HOM05D007098 ORTHO05D008793 6.3e-44 183.3 155 58.1
Ca_26530_v3 Cicer arietinum L. HOM05D005706 ORTHO05D008793 3.6e-31 141.0 96 68.8
Cpa.g.sc4.27 Carica papaya HOM05D006000 ORTHO05D008793 8.3e-28 129.8 121 51.2
Mapoly0023s0082 Marchantia polymorpha HOM05D007098 ORTHO05D008793 2.0e-26 125.2 210 30.5
Lj5C101T15 Lonicera japonica HOM05D007098 ORTHO05D008793 2.1e-23 115.2 73 82.2
MBI11_g46065_MAGBIO Magnolia biondii HOM05D007098 ORTHO05D008793 2.8e-23 114.8 73 74.0
Duzib084G0201 Durio zibethinus HOM05D007098 ORTHO05D008793 3.0e-22 111.3 75 77.3
DCAR_021600 Daucus carota HOM05D007098 ORTHO05D008793 1.5e-21 109.0 75 73.3
Zm00001eb154110 Zea mays HOM05D007098 ORTHO05D008793 5.7e-21 107.1 425 81.2
AagrBONN_evm.TU.Sc2ySwM_228.5130 Anthoceros agrestis HOM05D007098 ORTHO05D008793 1.8e-19 102.1 198 28.8
Ca_30971_v3 Cicer arietinum L. HOM05D007098 ORTHO05D008793 4.1e-19 100.9 176 36.4
Hma1.2p1_0014F.1_g009960 Hydrangea macrophylla HOM05D007098 ORTHO05D008793 5.6e-16 90.5 64 75.0
arahy.Tifrunner.gnm1.ann1.0Z4KK5 Arachis hypogaea HOM05D007098 ORTHO05D008793 3.5e-10 71.2 54 68.5
ClCG03G003360 Citrullus lanatus HOM05D007098 ORTHO05D008793 3.0e-09 68.2 48 72.9
Hma1.2p1_1303F.1_g274420 Hydrangea macrophylla HOM05D003056 ORTHO05D003422 1.9e-08 65.5 165 26.1
Potri.006G166200 Populus trichocarpa HOM05D003056 ORTHO05D003422 2.5e-08 65.1 166 26.5
Aa31LG8G16030 Aethionema arabicum HOM05D003056 ORTHO05D003422 9.5e-08 63.2 206 22.8
AL5G43620 Arabidopsis lyrata HOM05D003039 ORTHO05D008410 9.5e-08 63.2 138 30.4
PGR004G0301 Punica granatum HOM05D000001 ORTHO05D000003 9.5e-08 63.2 117 35.0
Sabra06G0127800 Salix brachista HOM05D003056 ORTHO05D003422 1.2e-07 62.8 166 25.3
AL3G52990 Arabidopsis lyrata HOM05D003056 ORTHO05D003422 2.8e-07 61.6 178 23.0
Ciclev10007460m.g Citrus clementina HOM05D003056 ORTHO05D003422 2.8e-07 61.6 215 24.2
CANSAT80G2863 Cannabis sativa HOM05D000001 ORTHO05D000003 3.6e-07 61.2 210 25.2
Cc10_g03430 Coffea canephora HOM05D007639 ORTHO05D009509 4.7e-07 60.8 125 31.2
AT2G18940 Arabidopsis thaliana HOM05D003056 ORTHO05D003422 8.0e-07 60.1 164 22.6
Sc03g0010580 Simmondsia chinensis HOM05D002453 ORTHO05D008746 8.0e-07 60.1 120 26.7
CANSAT80G2044 Cannabis sativa HOM05D000001 ORTHO05D000003 1.1e-06 59.7 116 30.2
RcHm_v2.0_Chr7g0184831 Rosa chinensis HOM05D002453 ORTHO05D008746 1.1e-06 59.7 141 29.1
MD13G1249100 Malus domestica HOM05D003056 ORTHO05D003422 1.4e-06 59.3 166 25.9
Prupe.5G218700 Prunus persica HOM05D002453 ORTHO05D008746 1.4e-06 59.3 122 26.2
Atru.chr7.865 Acer truncatum HOM05D003056 ORTHO05D003422 1.8e-06 58.9 166 25.3
Oeu062248.1 Olea europaea HOM05D004783 ORTHO05D005581 1.8e-06 58.9 190 22.6
BcaC01g01383 Brassica carinata HOM05D002453 ORTHO05D008746 2.3e-06 58.5 111 31.5
C03p91440 Brassica napus HOM05D002453 ORTHO05D008746 2.3e-06 58.5 111 31.5
BolC3t21463H Brassica oleracea HOM05D002753 ORTHO05D003097 2.3e-06 58.5 111 31.5
CARHR109480 Cardamine hirsuta HOM05D003056 ORTHO05D003422 2.3e-06 58.5 242 21.9
Haze_09312 Corylus avellana HOM05D002453 ORTHO05D008746 3.1e-06 58.2 122 27.9
FvH4_4g07880 Fragaria vesca HOM05D003056 ORTHO05D003422 3.1e-06 58.2 165 24.8
FAN17G0903 Fragaria x ananassa HOM05D003056 ORTHO05D003422 3.1e-06 58.2 165 24.8
MD15G1423900 Malus domestica HOM05D007322 ORTHO05D009029 3.1e-06 58.2 145 24.8
Prupe.3G037500 Prunus persica HOM05D003056 ORTHO05D003422 3.1e-06 58.2 166 26.5
CDE07G1469 Ceratophyllum demersum HOM05D003056 ORTHO05D003422 4.0e-06 57.8 145 23.4
Lsat_1_v5_gn_6_74000 Lactuca sativa HOM05D002007 ORTHO05D000355 4.0e-06 57.8 117 29.1
MD16G1255600 Malus domestica HOM05D003056 ORTHO05D003422 4.0e-06 57.8 165 25.5
PGR083G1300 Punica granatum HOM05D005390 ORTHO05D007086 4.0e-06 57.8 119 41.2
RcHm_v2.0_Chr4g0401161 Rosa chinensis HOM05D003056 ORTHO05D003422 4.0e-06 57.8 165 24.8
EL10Ac8g18299 Beta vulgaris HOM05D003056 ORTHO05D003422 5.2e-06 57.4 142 27.5
Eucgr.C02384 Eucalyptus grandis HOM05D003056 ORTHO05D003422 5.2e-06 57.4 165 23.6
Gohir.D12G193200 Gossypium hirsutum HOM05D000001 ORTHO05D000003 5.2e-06 57.4 186 26.3
SpUn0483_0010 Schrenkiella parvula HOM05D003056 ORTHO05D003422 5.2e-06 57.4 185 22.2
GSVIVG01010647001 Vitis vinifera HOM05D000001 ORTHO05D010013 5.2e-06 57.4 121 28.9
Atru.ctg752_3.82 Acer truncatum HOM05D002453 ORTHO05D008746 6.8e-06 57.0 122 27.9
Cc03_g16010 Coffea canephora HOM05D000001 ORTHO05D009766 6.8e-06 57.0 116 25.0
ECA240G0024 Erigeron canadensis HOM05D003056 ORTHO05D003422 6.8e-06 57.0 149 26.2
Migut.J01501 Erythranthe guttata HOM05D003056 ORTHO05D003422 6.8e-06 57.0 249 24.5
Lj1g0020110 Lotus japonicus HOM05D000001 ORTHO05D000003 6.8e-06 57.0 109 34.9
Nn8g40410 Nelumbo nucifera HOM05D003056 ORTHO05D003422 6.8e-06 57.0 168 25.6
Atru.chr6.1853 Acer truncatum HOM05D000001 ORTHO05D000003 8.9e-06 56.6 185 21.6
Carub.0003s3317 Capsella rubella HOM05D003056 ORTHO05D003422 8.9e-06 56.6 164 22.6
SEGI_24584 Sequoiadendron giganteum HOM05D000424 ORTHO05D000355 8.9e-06 56.6 144 23.6


User provided reference genes

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