Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PSO063G3024 Papaver somniferum HOM05D003979 ORTHO05D005530 0.0e+00 1232.6 625 100.0
PSO017G0981 Papaver somniferum HOM05D003979 ORTHO05D005530 0.0e+00 1166.0 625 95.8
Cc03_g07310 Coffea canephora HOM05D003979 ORTHO05D005530 2.9e-295 1018.1 630 81.3
Actinidia34623 Actinidia chinensis HOM05D003979 ORTHO05D005530 6.5e-295 1016.9 629 82.4
Cc02_g25590 Coffea canephora HOM05D003979 ORTHO05D005530 2.5e-294 1015.0 625 80.8
HanXRQChr14g0435331 Helianthus annuus HOM05D003979 ORTHO05D005530 2.5e-294 1015.0 581 85.7
Solyc12g043020.2 Solanum lycopersicum HOM05D003979 ORTHO05D005530 3.6e-293 1011.1 632 80.9
TAR365G0531 Trochodendron aralioides HOM05D003979 ORTHO05D005530 4.7e-293 1010.7 626 81.8
Ciclev10004565m.g Citrus clementina HOM05D003979 ORTHO05D005530 6.1e-293 1010.4 613 82.5
Dinv38268 Davidia involucrata HOM05D003979 ORTHO05D005530 8.0e-293 1010.0 631 81.1
MSTRG.24631 Avicennia marina HOM05D003979 ORTHO05D005530 1.0e-292 1009.6 585 84.8
Actinidia35951 Actinidia chinensis HOM05D003979 ORTHO05D005530 1.4e-292 1009.2 640 80.5
CSS0027237 Camellia sinensis var. sinensis HOM05D003979 ORTHO05D005530 1.8e-292 1008.8 633 80.6
Migut.N00344 Erythranthe guttata HOM05D003979 ORTHO05D005530 4.0e-292 1007.7 557 88.2
Nn1g03146 Nelumbo nucifera HOM05D003979 ORTHO05D005530 6.8e-292 1006.9 637 80.8
CSS0040719 Camellia sinensis var. sinensis HOM05D003979 ORTHO05D005530 8.8e-292 1006.5 633 80.4
AUR62020350 Chenopodium quinoa HOM05D003979 ORTHO05D005530 7.5e-291 1003.4 588 84.4
Sopen12g022260 Solanum pennellii HOM05D003979 ORTHO05D005530 7.5e-291 1003.4 632 80.5
Hma1.2p1_0691F.1_g204250 Hydrangea macrophylla HOM05D003979 ORTHO05D005530 1.3e-290 1002.7 633 80.6
Hund24848 Selenicereus undatus HOM05D003979 ORTHO05D005530 2.2e-290 1001.9 558 87.1
AUR62015873 Chenopodium quinoa HOM05D003979 ORTHO05D005530 2.8e-290 1001.5 585 84.1
HanXRQChr02g0059571 Helianthus annuus HOM05D003979 ORTHO05D005530 1.4e-289 999.2 557 87.3
PGSC0003DMG400019163 Solanum tuberosum HOM05D003979 ORTHO05D005530 3.1e-289 998.0 627 80.1
Cfa014896 Carpinus fangiana HOM05D003979 ORTHO05D005530 4.1e-289 997.7 574 85.4
Potri.003G176600 Populus trichocarpa HOM05D003979 ORTHO05D005530 1.2e-288 996.1 559 87.1
Solyc05g053540.3 Solanum lycopersicum HOM05D003979 ORTHO05D005530 3.5e-288 994.6 627 80.2
Sopen05g032060 Solanum pennellii HOM05D003979 ORTHO05D005530 3.5e-288 994.6 627 80.2
arahy.Tifrunner.gnm1.ann1.ZGF32Z Arachis hypogaea HOM05D003979 ORTHO05D005530 5.9e-288 993.8 579 83.6
Potri.001G051700 Populus trichocarpa HOM05D003979 ORTHO05D005530 2.3e-287 991.9 585 83.6
Medtr2g089340 Medicago truncatula HOM05D003979 ORTHO05D005530 2.9e-287 991.5 576 83.3
CiPaw.02G067900 Carya illinoinensis HOM05D003979 ORTHO05D005530 5.0e-287 990.7 590 82.7
Glyma.13G207900 Glycine max HOM05D003979 ORTHO05D005530 6.6e-287 990.3 574 83.3
Sc25g0005860 Simmondsia chinensis HOM05D003979 ORTHO05D005530 6.6e-287 990.3 577 83.4
ECA233G3228 Erigeron canadensis HOM05D003979 ORTHO05D005530 8.6e-287 989.9 626 80.4
Lsat_1_v5_gn_6_63381 Lactuca sativa HOM05D003979 ORTHO05D005530 1.5e-286 989.2 557 85.6
Sabra01G0036200 Salix brachista HOM05D003979 ORTHO05D005530 1.9e-286 988.8 579 84.5
MELO3C006331.2 Cucumis melo HOM05D003979 ORTHO05D005530 4.3e-286 987.6 638 78.2
DCAR_031519 Daucus carota HOM05D003979 ORTHO05D005530 5.6e-286 987.3 599 81.8
CANSAT78G1204 Cannabis sativa HOM05D003979 ORTHO05D005530 7.3e-286 986.9 573 84.5
Thecc.04G210300 Theobroma cacao HOM05D003979 ORTHO05D005530 9.5e-286 986.5 595 81.7
TAR624G0299 Trochodendron aralioides HOM05D003979 ORTHO05D005530 1.6e-285 985.7 608 82.2
Duzib212G0229 Durio zibethinus HOM05D003979 ORTHO05D005530 2.8e-285 984.9 582 83.3
Peaxi162Scf00073g02029 Petunia axillaris HOM05D003979 ORTHO05D005530 3.6e-285 984.6 625 80.2
Gohir.D02G031700 Gossypium hirsutum HOM05D003979 ORTHO05D005530 4.7e-285 984.2 580 83.4
Phvul.006G152700 Phaseolus vulgaris HOM05D003979 ORTHO05D005530 4.7e-285 984.2 601 80.2
Gorai.005G035200 Gossypium raimondii HOM05D003979 ORTHO05D005530 8.0e-285 983.4 601 81.2
ClCG05G003530 Citrullus lanatus HOM05D003979 ORTHO05D005530 1.0e-284 983.0 638 77.7
CsaV3_3G011200 Cucumis sativus L. HOM05D003979 ORTHO05D005530 1.0e-284 983.0 607 80.2
Prupe.1G003100 Prunus persica HOM05D003979 ORTHO05D005530 1.0e-284 983.0 573 84.3
VMungo0540G1831 Vigna mungo HOM05D003979 ORTHO05D005530 1.4e-284 982.6 601 80.7
EL10Ac4g07703 Beta vulgaris HOM05D003979 ORTHO05D005530 3.0e-284 981.5 619 79.2
CAN.G765.2 Capsicum annuum HOM05D003979 ORTHO05D005530 3.0e-284 981.5 633 78.2
COL.COLO4_20310 Corchorus olitorius HOM05D003979 ORTHO05D005530 3.0e-284 981.5 604 81.1
Duzib151G0303 Durio zibethinus HOM05D003979 ORTHO05D005530 3.0e-284 981.5 582 82.8
Thhalv10002451m.g Eutrema salsugineum HOM05D003979 ORTHO05D005530 3.0e-284 981.5 583 82.7
Lj6g0025731 Lotus japonicus HOM05D003979 ORTHO05D005530 3.0e-284 981.5 560 83.8
ATR0787G169 Amborella trichopoda HOM05D003979 ORTHO05D005530 4.0e-284 981.1 594 82.0
Aqoxy2G03779 Aquilegia oxysepala HOM05D003979 ORTHO05D005530 4.0e-284 981.1 595 82.0
Lalb_Chr18g0056121 Lupinus albus HOM05D003979 ORTHO05D005530 4.0e-284 981.1 558 84.4
MBI07_g21060_MAGBIO Magnolia biondii HOM05D003979 ORTHO05D005530 4.0e-284 981.1 644 76.4
RcHm_v2.0_Chr1g0328531 Rosa chinensis HOM05D003979 ORTHO05D005530 4.0e-284 981.1 606 80.0
Gohir.A02G024400 Gossypium hirsutum HOM05D003979 ORTHO05D005530 5.2e-284 980.7 601 81.0
PGR031G0232 Punica granatum HOM05D003979 ORTHO05D005530 1.5e-283 979.2 602 80.9
CARHR100330 Cardamine hirsuta HOM05D003979 ORTHO05D005530 2.0e-283 978.8 572 84.4
Psat1g182280 Pisum sativum HOM05D003979 ORTHO05D005530 2.0e-283 978.8 570 83.0
Manes.15G050825 Manihot esculenta HOM05D003979 ORTHO05D005530 3.4e-283 978.0 581 82.8
Os08g0559600 Oryza sativa ssp. japonica HOM05D003979 ORTHO05D005530 3.4e-283 978.0 598 80.9
Haze_11573 Corylus avellana HOM05D003979 ORTHO05D005530 5.7e-283 977.2 609 80.6
Sed0009934 Sechium edule HOM05D003979 ORTHO05D005530 7.5e-283 976.9 629 78.4
THA.LOC104808724 Tarenaya hassleriana HOM05D003979 ORTHO05D005530 9.8e-283 976.5 585 82.6
Ah.04g166150 Amaranthus hybridus HOM05D003979 ORTHO05D005530 1.7e-282 975.7 591 82.1
THA.LOC104804817 Tarenaya hassleriana HOM05D003979 ORTHO05D005530 2.2e-282 975.3 583 83.0
Aqoxy5G02610 Aquilegia oxysepala HOM05D003979 ORTHO05D005530 2.9e-282 974.9 573 83.9
MD04G1003600 Malus domestica HOM05D003979 ORTHO05D005530 3.7e-282 974.5 620 78.7
AT3G23940 Arabidopsis thaliana HOM05D003979 ORTHO05D005530 6.4e-282 973.8 593 81.6
FAN10G0585 Fragaria x ananassa HOM05D003979 ORTHO05D005530 8.3e-282 973.4 569 82.8
Sp3g22010 Schrenkiella parvula HOM05D003979 ORTHO05D005530 8.3e-282 973.4 584 82.9
Carub.0003s2458 Capsella rubella HOM05D003979 ORTHO05D005530 1.1e-281 973.0 572 83.9
AL3G39610 Arabidopsis lyrata HOM05D003979 ORTHO05D005530 1.4e-281 972.6 572 83.9
FAN06G4745 Fragaria x ananassa HOM05D003979 ORTHO05D005530 1.4e-281 972.6 576 82.3
QL07p012465 Quercus lobata HOM05D003979 ORTHO05D005530 1.4e-281 972.6 580 82.1
Ca_00636_v3 Cicer arietinum L. HOM05D003979 ORTHO05D005530 1.8e-281 972.2 577 81.1
Ca_29705_v3 Cicer arietinum L. HOM05D003979 ORTHO05D005530 1.8e-281 972.2 577 81.1
A07p08130 Brassica napus HOM05D003979 ORTHO05D005530 2.4e-281 971.8 595 81.2
BraA07t28596Z Brassica rapa HOM05D003979 ORTHO05D005530 2.4e-281 971.8 595 81.2
FvH4_7g04190 Fragaria vesca HOM05D003979 ORTHO05D005530 2.4e-281 971.8 573 82.2
Zm00001eb175970 Zea mays HOM05D003979 ORTHO05D005530 3.2e-281 971.5 596 80.4
FAN01G2046 Fragaria x ananassa HOM05D003979 ORTHO05D005530 4.1e-281 971.1 561 83.6
CiPaw.01G125500 Carya illinoinensis HOM05D003979 ORTHO05D005530 5.4e-281 970.7 597 80.4
BcaB06g26604 Brassica carinata HOM05D003979 ORTHO05D005530 1.2e-280 969.5 586 82.3
BcaC06g35668 Brassica carinata HOM05D003979 ORTHO05D005530 1.6e-280 969.1 595 81.0
C07p12270 Brassica napus HOM05D003979 ORTHO05D005530 1.6e-280 969.1 586 82.1
Zm00001eb039310 Zea mays HOM05D003979 ORTHO05D005530 2.7e-280 968.4 598 80.6
C01p39410 Brassica napus HOM05D003979 ORTHO05D005530 3.5e-280 968.0 591 81.4
BolC1t03890H Brassica oleracea HOM05D003979 ORTHO05D005530 3.5e-280 968.0 591 81.4
Oeu022336.1 Olea europaea HOM05D003979 ORTHO05D005530 3.5e-280 968.0 577 83.7
BcaB04g20393 Brassica carinata HOM05D003979 ORTHO05D005530 4.6e-280 967.6 588 81.8
BraA01t03222Z Brassica rapa HOM05D003979 ORTHO05D005530 1.3e-279 966.1 585 81.9
Aa31LG8G10930 Aethionema arabicum HOM05D003979 ORTHO05D005530 1.7e-279 965.7 557 84.9
RhsimUnG0135800 Rhododendron simsii HOM05D003979 ORTHO05D005530 3.0e-279 964.9 592 81.2
A01p30940 Brassica napus HOM05D003979 ORTHO05D005530 3.9e-279 964.5 585 81.9
Pp3c11_18700 Physcomitrium patens HOM05D003979 ORTHO05D005530 3.9e-279 964.5 643 75.1
BolC7t41694H Brassica oleracea HOM05D003979 ORTHO05D005530 3.6e-277 958.0 600 80.0
Duzib268G0146 Durio zibethinus HOM05D003979 ORTHO05D005530 3.6e-277 958.0 582 80.9
Nitab4.5_0001769g0010 Nicotiana tabacum HOM05D003979 ORTHO05D005530 4.7e-277 957.6 569 83.3
GSVIVG01029073001 Vitis vinifera HOM05D003979 ORTHO05D005530 5.2e-276 954.1 527 87.7
Cpa.g.sc59.101 Carica papaya HOM05D003979 ORTHO05D005530 4.4e-275 951.0 564 82.8
RhsimUnG0180900 Rhododendron simsii HOM05D003979 ORTHO05D005530 7.0e-273 943.7 636 75.6
arahy.Tifrunner.gnm1.ann1.NX1XST Arachis hypogaea HOM05D003979 ORTHO05D005530 2.0e-272 942.2 599 78.6
AUR62017196 Chenopodium quinoa HOM05D003979 ORTHO05D005530 7.8e-272 940.3 574 79.4
SMO361G0245 Selaginella moellendorffii HOM05D003979 ORTHO05D005530 3.3e-270 934.9 579 78.4
Hund11465 Selenicereus undatus HOM05D003979 ORTHO05D005530 4.0e-268 927.9 569 80.0
Mapoly0044s0128 Marchantia polymorpha HOM05D003979 ORTHO05D005530 2.0e-267 925.6 572 76.6
Peaxi162Scf00536g00915 Petunia axillaris HOM05D003979 ORTHO05D005530 1.2e-261 906.4 625 74.9
CBR_g16971 Chara braunii HOM05D003979 ORTHO05D005530 6.2e-261 904.0 569 76.4
Gohir.D10G144500 Gossypium hirsutum HOM05D003979 ORTHO05D005530 8.9e-260 900.2 552 80.8
AUR62010687 Chenopodium quinoa HOM05D003979 ORTHO05D005530 1.1e-257 893.3 633 72.0
Nitab4.5_0001066g0080 Nicotiana tabacum HOM05D003979 ORTHO05D005530 3.5e-256 888.3 576 78.1
SGA_v2.0_scaffold31G12595 Striga asiatica HOM05D003979 ORTHO05D005530 7.8e-256 887.1 539 82.2
HPP92_025762 Vanilla planifolia HOM05D003979 ORTHO05D005530 2.1e-253 879.0 527 81.2
Lj6C614G9 Lonicera japonica HOM05D003979 ORTHO05D005530 3.3e-246 855.1 586 74.4
Cre03.g206600 Chlamydomonas reinhardtii HOM05D003979 ORTHO05D005530 4.2e-241 838.2 603 68.0
TWI09G0393 Tripterygium wilfordii HOM05D003979 ORTHO05D005530 5.1e-239 831.2 634 68.0
MCO11G076 Micromonas commoda HOM05D003979 ORTHO05D005530 6.7e-239 830.9 564 70.2
Gorai.011G161400 Gossypium raimondii HOM05D003979 ORTHO05D005530 1.2e-235 820.1 608 70.1
SMO361G0819 Selaginella moellendorffii HOM05D003979 ORTHO05D005530 3.1e-228 795.4 490 79.8
AagrBONN_evm.TU.Sc2ySwM_228.3337 Anthoceros agrestis HOM05D003979 ORTHO05D005530 7.1e-225 784.3 496 77.4
PRCOL_00005867 Prasinoderma coloniale HOM05D003979 ORTHO05D005530 3.0e-223 778.9 553 68.9
unitig_899.g15534 Utricularia gibba HOM05D003979 ORTHO05D005530 7.4e-222 774.2 490 79.8
CDE04G1626 Ceratophyllum demersum HOM05D003979 ORTHO05D005530 5.9e-219 764.6 433 86.1
QL06p023475 Quercus lobata HOM05D003979 ORTHO05D005530 2.5e-214 749.2 477 79.7
SEGI_04002 Sequoiadendron giganteum HOM05D003979 ORTHO05D005530 3.7e-213 745.3 433 83.4
HPP92_025735 Vanilla planifolia HOM05D003979 ORTHO05D005530 1.0e-210 737.3 490 76.3
Gohir.A10G121600 Gossypium hirsutum HOM05D003979 ORTHO05D005530 1.4e-207 726.9 426 83.3
HPP92_025731 Vanilla planifolia HOM05D003979 ORTHO05D005530 3.1e-204 715.7 420 82.9
Cfa024863 Carpinus fangiana HOM05D003979 ORTHO05D005530 2.2e-202 709.5 579 60.8
vmacro00507 Vaccinium macrocarpon HOM05D003979 ORTHO05D005530 5.2e-191 671.8 403 82.6
Atru.chr4.1774 Acer truncatum HOM05D003979 ORTHO05D005530 5.0e-170 602.1 433 71.8
Cfa023757 Carpinus fangiana HOM05D003979 ORTHO05D005530 2.3e-167 593.2 573 53.1
Eucgr.H02826 Eucalyptus grandis HOM05D003979 ORTHO05D005530 9.2e-156 554.7 312 86.9
QL07p030448 Quercus lobata HOM05D003979 ORTHO05D000106 1.3e-146 524.2 384 71.4
Eucgr.C02488 Eucalyptus grandis HOM05D003979 ORTHO05D005530 1.1e-129 468.0 340 73.8
HanXRQChr14g0435341 Helianthus annuus HOM05D003979 ORTHO05D005530 6.4e-117 425.6 252 81.7
Manes.03G150102 Manihot esculenta HOM05D003979 ORTHO05D005530 6.9e-103 379.0 277 66.8
TPR.G30672 Trifolium pratense HOM05D003979 ORTHO05D005530 1.1e-92 345.1 215 77.2
CAN.G12.22 Capsicum annuum HOM05D003979 ORTHO05D005530 2.1e-75 287.7 152 90.1
Cfa023448 Carpinus fangiana HOM05D003979 ORTHO05D123299 6.1e-75 286.2 557 34.3
vmacro00506 Vaccinium macrocarpon HOM05D003979 ORTHO05D005530 1.8e-74 284.6 150 90.7
Eucgr.H02825 Eucalyptus grandis HOM05D003979 ORTHO05D015566 1.6e-67 261.5 150 86.0
Cfa020039 Carpinus fangiana HOM05D003979 ORTHO05D015566 9.5e-60 235.7 131 86.3
QL07p012436 Quercus lobata HOM05D003979 ORTHO05D005530 9.8e-57 225.7 126 86.5
Duzib268G0265 Durio zibethinus HOM05D003979 ORTHO05D015566 3.2e-55 220.7 133 76.7
Lsat_1_v5_gn_4_162440 Lactuca sativa HOM05D003979 ORTHO05D015566 3.6e-51 207.2 144 74.3
Oeu022341.1 Olea europaea HOM05D003979 ORTHO05D049433 6.1e-51 206.5 178 62.4
THA.LOC104809102 Tarenaya hassleriana HOM05D003979 ORTHO05D049433 2.3e-50 204.5 116 87.1
PGSC0003DMG400028636 Solanum tuberosum HOM05D003979 ORTHO05D015566 1.2e-49 202.2 115 81.7
QL06p023466 Quercus lobata HOM05D003979 ORTHO05D015566 6.4e-48 196.4 114 79.8
Gohir.D02G124900 Gossypium hirsutum HOM05D003979 ORTHO05D005530 3.9e-45 187.2 105 82.9
Eucgr.C02482 Eucalyptus grandis HOM05D003979 ORTHO05D015566 1.1e-44 185.7 115 80.0
Gorai.005G140500 Gossypium raimondii HOM05D003979 ORTHO05D005530 5.6e-44 183.3 133 68.4
Oeu006718.2 Olea europaea HOM05D003979 ORTHO05D005530 7.5e-41 172.9 252 46.0
CDE04G0146 Ceratophyllum demersum HOM05D003979 ORTHO05D005530 2.9e-40 171.0 121 70.2
TPR.G30661 Trifolium pratense HOM05D003979 ORTHO05D005530 1.1e-34 152.5 183 50.3
TWI36G0080 Tripterygium wilfordii HOM05D003979 ORTHO05D005530 1.8e-34 151.8 88 83.0
Lsat_1_v5_gn_5_133441 Lactuca sativa HOM05D003979 ORTHO05D015566 9.6e-28 129.4 116 62.1
CAN.G12.21 Capsicum annuum HOM05D003979 ORTHO05D015566 1.8e-26 125.2 61 96.7
SMO361G0618 Selaginella moellendorffii HOM05D003979 ORTHO05D015566 2.2e-24 118.2 212 37.3
CAN.G12.20 Capsicum annuum HOM05D003979 ORTHO05D015566 3.2e-23 114.4 70 72.9
TPR.G35859 Trifolium pratense HOM05D003979 ORTHO05D015566 1.1e-20 105.9 56 91.1
Aqoxy226s001 Aquilegia oxysepala HOM05D004107 ORTHO05D004738 1.4e-15 89.0 180 30.0
HPP92_025734 Vanilla planifolia HOM05D003979 ORTHO05D005530 2.1e-14 85.1 70 61.4
TAR362G1054 Trochodendron aralioides HOM05D000447 ORTHO05D000315 1.0e-13 82.8 67 58.2
unitig_899.g15535 Utricularia gibba HOM05D003979 ORTHO05D005530 3.8e-08 64.3 92 45.7


User provided reference genes

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