Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PSO063G2956 Papaver somniferum HOM05D005316 ORTHO05D006495 0.0e+00 1529.6 939 100.0
PSO339G4035 Papaver somniferum HOM05D005316 ORTHO05D006495 0.0e+00 1427.9 939 95.1
MBI19_g03558_MAGBIO Magnolia biondii HOM05D005316 ORTHO05D006495 1.7e-283 979.5 969 57.1
Rhsim03G0088900 Rhododendron simsii HOM05D005316 ORTHO05D006495 1.0e-275 953.7 961 68.2
vmacro07322 Vaccinium macrocarpon HOM05D005316 ORTHO05D006495 1.0e-275 953.7 985 58.4
Potri.006G121100 Populus trichocarpa HOM05D005316 ORTHO05D006495 1.1e-274 950.3 942 68.8
Aqoxy1G00948 Aquilegia oxysepala HOM05D005316 ORTHO05D006495 2.1e-273 946.0 948 68.8
TAR369G0309 Trochodendron aralioides HOM05D005316 ORTHO05D006495 1.8e-272 943.0 950 69.8
Nn6g35213 Nelumbo nucifera HOM05D005316 ORTHO05D006495 2.6e-271 939.1 932 69.2
VMungo1383G0853 Vigna mungo HOM05D005316 ORTHO05D006495 3.2e-269 932.2 947 68.6
Gohir.A04G069900 Gossypium hirsutum HOM05D005316 ORTHO05D006495 1.2e-268 930.2 946 68.7
Gohir.D04G108500 Gossypium hirsutum HOM05D005316 ORTHO05D006495 4.6e-268 928.3 936 69.3
Actinidia26652 Actinidia chinensis HOM05D005316 ORTHO05D006495 5.1e-267 924.9 940 68.2
Sabra06G0095300 Salix brachista HOM05D005316 ORTHO05D006495 5.1e-267 924.9 941 67.6
Gorai.009G412600 Gossypium raimondii HOM05D005316 ORTHO05D006495 1.3e-265 920.2 934 68.5
Manes.09G050526 Manihot esculenta HOM05D005316 ORTHO05D006495 4.8e-265 918.3 940 67.2
Eucgr.K02435 Eucalyptus grandis HOM05D005316 ORTHO05D006495 1.1e-264 917.1 937 67.9
Thecc.05G072100 Theobroma cacao HOM05D005316 ORTHO05D006495 9.0e-264 914.1 934 68.3
Haze_19439 Corylus avellana HOM05D005316 ORTHO05D006495 2.0e-263 912.9 946 64.3
Cpa.g.sc5.157 Carica papaya HOM05D005316 ORTHO05D006495 5.8e-263 911.4 937 68.0
Peaxi162Scf00435g01012 Petunia axillaris HOM05D005316 ORTHO05D006495 4.9e-262 908.3 949 67.4
TWI77G0675 Tripterygium wilfordii HOM05D005316 ORTHO05D006495 1.4e-261 906.7 928 67.7
Ciclev10010984m.g Citrus clementina HOM05D005316 ORTHO05D006495 9.3e-261 904.0 949 67.5
MD12G1106200 Malus domestica HOM05D005316 ORTHO05D006495 2.7e-260 902.5 948 66.7
Prupe.7G125100 Prunus persica HOM05D005316 ORTHO05D006495 2.7e-260 902.5 948 66.8
Duzib128G2040 Durio zibethinus HOM05D005316 ORTHO05D006495 6.0e-260 901.4 937 67.0
AUR62043277 Chenopodium quinoa HOM05D005316 ORTHO05D006495 1.3e-259 900.2 962 65.7
Atru.chr8.1745 Acer truncatum HOM05D005316 ORTHO05D006495 6.7e-259 897.9 940 68.1
CSS0008696 Camellia sinensis var. sinensis HOM05D005316 ORTHO05D006495 1.1e-258 897.1 941 57.6
CiPaw.09G002900 Carya illinoinensis HOM05D005316 ORTHO05D006495 1.5e-258 896.7 933 68.0
Cc06_g04580 Coffea canephora HOM05D005316 ORTHO05D006495 1.1e-256 890.6 936 67.4
RcHm_v2.0_Chr3g0470921 Rosa chinensis HOM05D005316 ORTHO05D006495 1.8e-256 889.8 948 66.7
Nitab4.5_0003314g0010 Nicotiana tabacum HOM05D005316 ORTHO05D006495 4.0e-256 888.6 938 66.6
CANSAT80G2075 Cannabis sativa HOM05D005316 ORTHO05D006495 1.5e-255 886.7 946 66.0
Ca_08924_v3 Cicer arietinum L. HOM05D005316 ORTHO05D006495 4.6e-252 875.2 950 65.6
Glyma.19G186600 Glycine max HOM05D005316 ORTHO05D006495 6.0e-252 874.8 947 66.0
Solyc10g039190.2 Solanum lycopersicum HOM05D005316 ORTHO05D006495 6.0e-252 874.8 930 66.7
AUR62026938 Chenopodium quinoa HOM05D005316 ORTHO05D006495 1.3e-251 873.6 961 65.2
Glyma.03G186500 Glycine max HOM05D005316 ORTHO05D006495 1.8e-251 873.2 946 66.0
ClCG04G009490 Citrullus lanatus HOM05D005316 ORTHO05D006495 3.0e-251 872.5 945 64.9
PGSC0003DMG400025700 Solanum tuberosum HOM05D005316 ORTHO05D006495 6.7e-251 871.3 930 66.1
Medtr4g123597 Medicago truncatula HOM05D005316 ORTHO05D006495 1.1e-250 870.5 947 65.8
Aa31LG9G1930 Aethionema arabicum HOM05D005316 ORTHO05D006495 7.4e-250 867.8 939 64.5
Lalb_Chr01g0018571 Lupinus albus HOM05D005316 ORTHO05D006495 1.3e-249 867.1 959 64.9
Sopen10g012250 Solanum pennellii HOM05D005316 ORTHO05D006495 1.3e-249 867.1 930 66.3
PGR142G2834 Punica granatum HOM05D005316 ORTHO05D006495 1.6e-249 866.7 941 55.7
DCAR_020803 Daucus carota HOM05D005316 ORTHO05D006495 8.2e-249 864.4 936 65.3
EL10Ac7g16684 Beta vulgaris HOM05D005316 ORTHO05D006495 1.4e-248 863.6 944 65.4
TPR.G12554 Trifolium pratense HOM05D005316 ORTHO05D006495 1.2e-247 860.5 950 65.1
Phvul.001G181500 Phaseolus vulgaris HOM05D005316 ORTHO05D006495 1.5e-247 860.1 947 65.5
CsaV3_6G040110 Cucumis sativus L. HOM05D005316 ORTHO05D006495 1.0e-246 857.4 945 64.0
MELO3C024484.2 Cucumis melo HOM05D005316 ORTHO05D006495 2.9e-246 855.9 945 63.8
arahy.Tifrunner.gnm1.ann1.731ZEV Arachis hypogaea HOM05D005316 ORTHO05D006495 4.9e-246 855.1 953 65.4
HanXRQChr13g0400681 Helianthus annuus HOM05D005316 ORTHO05D006495 4.9e-246 855.1 932 65.1
Dinv37343 Davidia involucrata HOM05D005316 ORTHO05D006495 1.9e-245 853.2 759 73.0
arahy.Tifrunner.gnm1.ann1.RNM8HY Arachis hypogaea HOM05D005316 ORTHO05D006495 4.2e-245 852.0 993 63.3
FAN05G5169 Fragaria x ananassa HOM05D005316 ORTHO05D006495 4.2e-245 852.0 950 65.3
COL.COLO4_26906 Corchorus olitorius HOM05D005316 ORTHO05D006495 5.5e-245 851.7 962 65.1
Lsat_1_v5_gn_6_28620 Lactuca sativa HOM05D005316 ORTHO05D006495 5.5e-245 851.7 933 65.5
FAN05G1083 Fragaria x ananassa HOM05D005316 ORTHO05D006495 7.1e-245 851.3 950 65.2
FAN14G0140 Fragaria x ananassa HOM05D005316 ORTHO05D006495 1.2e-244 850.5 958 64.9
THA.LOC104802568 Tarenaya hassleriana HOM05D005316 ORTHO05D006495 1.2e-244 850.5 936 64.2
FAN09G0678 Fragaria x ananassa HOM05D005316 ORTHO05D006495 7.9e-244 847.8 950 65.1
GSVIVG01033690001 Vitis vinifera HOM05D005316 ORTHO05D006495 7.9e-244 847.8 928 65.6
FvH4_6g16900 Fragaria vesca HOM05D005316 ORTHO05D006495 1.0e-243 847.4 950 65.3
Ah.15g091450 Amaranthus hybridus HOM05D005316 ORTHO05D006495 1.8e-243 846.7 950 64.5
THA.LOC104820227 Tarenaya hassleriana HOM05D005316 ORTHO05D006495 1.1e-242 844.0 934 64.2
CARHR097490 Cardamine hirsuta HOM05D005316 ORTHO05D006495 1.9e-242 843.2 934 62.7
Nitab4.5_0002535g0010 Nicotiana tabacum HOM05D005316 ORTHO05D006495 2.5e-242 842.8 937 64.8
QL07p042170 Quercus lobata HOM05D005316 ORTHO05D006495 7.4e-242 841.3 1106 58.4
Psat4g020280 Pisum sativum HOM05D005316 ORTHO05D006495 6.3e-241 838.2 949 63.6
AL3G35650 Arabidopsis lyrata HOM05D005316 ORTHO05D006495 3.1e-240 835.9 949 62.5
SalBow3G2891 Salvia bowleyana HOM05D005316 ORTHO05D006495 6.9e-240 834.7 922 64.8
AT3G21540 Arabidopsis thaliana HOM05D005316 ORTHO05D006495 9.0e-240 834.3 942 62.4
ECA233G4339 Erigeron canadensis HOM05D005316 ORTHO05D006495 1.7e-238 830.1 950 63.5
MSTRG.5779 Avicennia marina HOM05D005316 ORTHO05D006495 3.8e-238 828.9 947 63.1
Sed0019607 Sechium edule HOM05D005316 ORTHO05D006495 2.7e-236 822.8 946 61.7
SGA_v2.0_scaffold40G15467 Striga asiatica HOM05D005316 ORTHO05D006495 3.0e-235 819.3 962 52.0
CDE07G2059 Ceratophyllum demersum HOM05D005316 ORTHO05D006495 5.1e-235 818.5 945 64.1
HPP92_025964 Vanilla planifolia HOM05D005316 ORTHO05D006495 1.5e-234 817.0 949 63.1
Carub.0003s2158 Capsella rubella HOM05D005316 ORTHO05D006495 1.3e-233 813.9 940 61.4
Oeu056529.1 Olea europaea HOM05D005316 ORTHO05D006495 4.8e-233 812.0 938 63.8
PGSC0003DMG400013161 Solanum tuberosum HOM05D005316 ORTHO05D006495 4.8e-233 812.0 928 63.0
Thhalv10024329m.g Eutrema salsugineum HOM05D005316 ORTHO05D006495 2.0e-231 806.6 946 60.9
Lj1g0025750 Lotus japonicus HOM05D005316 ORTHO05D006495 3.8e-230 802.4 951 62.6
CAN.G1038.14 Capsicum annuum HOM05D005316 ORTHO05D006495 4.7e-228 795.4 946 62.5
Sc20g0005710 Simmondsia chinensis HOM05D005316 ORTHO05D006495 3.3e-226 789.3 887 64.6
ATR0661G280 Amborella trichopoda HOM05D005316 ORTHO05D006495 1.7e-225 786.9 948 61.7
Sp7g13750 Schrenkiella parvula HOM05D005316 ORTHO05D006495 6.3e-225 785.0 940 60.3
A01p22070 Brassica napus HOM05D005316 ORTHO05D006495 8.5e-222 774.6 945 60.3
C01p27470 Brassica napus HOM05D005316 ORTHO05D006495 1.9e-221 773.5 945 60.3
BraA01t02113Z Brassica rapa HOM05D005316 ORTHO05D006495 1.0e-219 767.7 945 59.9
Nitab4.5_0000108g0390 Nicotiana tabacum HOM05D005316 ORTHO05D006495 6.7e-219 765.0 944 61.7
BcaC09g50240 Brassica carinata HOM05D005316 ORTHO05D006495 5.7e-218 761.9 945 59.7
BolC1t02686H Brassica oleracea HOM05D005316 ORTHO05D006495 9.7e-218 761.1 943 59.2
unitig_578.g15787 Utricularia gibba HOM05D005316 ORTHO05D006495 8.2e-217 758.1 944 59.6
Lj3C1008T11 Lonicera japonica HOM05D005316 ORTHO05D006495 4.5e-215 752.3 815 67.2
Migut.J00458 Erythranthe guttata HOM05D005316 ORTHO05D006495 2.6e-210 736.5 942 59.2
CAN.G363.3 Capsicum annuum HOM05D005316 ORTHO05D006495 1.0e-206 724.5 1019 53.4
Os03g0151700 Oryza sativa ssp. japonica HOM05D005316 ORTHO05D006495 1.3e-206 724.2 932 58.9
SHI18788 Sapria himalayana HOM05D005316 ORTHO05D006495 4.7e-204 715.7 859 62.7
Zm00001eb004160 Zea mays HOM05D005316 ORTHO05D006495 1.5e-202 710.7 766 64.1
RcHm_v2.0_Chr7g0224541 Rosa chinensis HOM05D005316 ORTHO05D006495 3.6e-196 689.5 920 55.9
BcaC06g32938 Brassica carinata HOM05D005316 ORTHO05D006495 1.7e-190 670.6 946 53.2
SEGI_01067 Sequoiadendron giganteum HOM05D005316 ORTHO05D006495 7.5e-186 655.2 868 58.2
Mapoly0021s0013 Marchantia polymorpha HOM05D005316 ORTHO05D006495 9.5e-181 638.3 949 54.5
SMO144G0213 Selaginella moellendorffii HOM05D005316 ORTHO05D006495 5.8e-178 629.0 939 53.4
Pp3c24_9020 Physcomitrium patens HOM05D005316 ORTHO05D006495 3.9e-166 589.7 963 48.7
Pp3c24_9070 Physcomitrium patens HOM05D005316 ORTHO05D006495 3.9e-166 589.7 963 48.7
AagrBONN_evm.TU.Sc2ySwM_344.3757 Anthoceros agrestis HOM05D005316 ORTHO05D006495 2.1e-164 583.9 955 51.3
CBR_g3060 Chara braunii HOM05D005316 ORTHO05D006495 1.4e-160 571.2 979 51.1
CDE06G1287 Ceratophyllum demersum HOM05D005316 ORTHO05D006495 1.5e-138 498.0 652 46.8
RcHm_v2.0_Chr2g0174151 Rosa chinensis HOM05D005316 ORTHO05D006495 8.2e-124 449.1 601 46.4
Lalb_Chr20g0112451 Lupinus albus HOM05D005316 ORTHO05D006495 6.9e-115 419.5 355 63.1
FAN02G2889 Fragaria x ananassa HOM05D005316 ORTHO05D006495 2.0e-114 417.9 587 58.8
Cre10.g438700 Chlamydomonas reinhardtii HOM05D005316 ORTHO05D006495 3.6e-111 407.1 940 42.0
MCO12G069 Micromonas commoda HOM05D005316 ORTHO05D006495 7.9e-111 406.0 954 40.4
PRCOL_00001463 Prasinoderma coloniale HOM05D005316 ORTHO05D006495 1.2e-95 355.5 1042 37.3
Psat3g110240 Pisum sativum HOM05D005316 ORTHO05D017863 2.0e-74 285.0 472 37.5
Psat7g226920 Pisum sativum HOM05D003193 ORTHO05D006495 1.2e-53 216.1 138 73.2
Gohir.A13G089800 Gossypium hirsutum HOM05D005316 ORTHO05D006495 6.6e-49 200.3 182 58.8
Psat0s3791g0160 Pisum sativum HOM05D005316 ORTHO05D006495 9.6e-48 196.4 134 67.2
Psat3g057760 Pisum sativum HOM05D005316 ORTHO05D006495 1.3e-36 159.5 125 58.4
Lalb_Chr20g0112411 Lupinus albus HOM05D005316 ORTHO05D006495 1.9e-35 155.6 130 59.2
PGSC0003DMG400023254 Solanum tuberosum HOM05D005316 ORTHO05D006495 1.6e-34 152.5 188 46.8
Psat5g092920 Pisum sativum HOM05D000083 ORTHO05D001244 2.1e-34 152.1 111 69.4
Psat2g167720 Pisum sativum HOM05D005316 ORTHO05D006495 1.7e-33 149.1 149 50.3
SEGI_29002 Sequoiadendron giganteum HOM05D005316 ORTHO05D006495 4.5e-29 134.4 127 50.4
Lj3C1008T12 Lonicera japonica HOM05D005316 ORTHO05D006495 1.1e-24 119.8 85 72.9
SHI18789 Sapria himalayana HOM05D005316 ORTHO05D006495 2.0e-21 109.0 74 75.7
Sc24g0000540 Simmondsia chinensis HOM05D005316 ORTHO05D006495 3.4e-21 108.2 74 67.6
Lalb_Chr20g0112421 Lupinus albus HOM05D005316 ORTHO05D006495 1.2e-18 99.8 77 63.6
Psat0s3199g0080 Pisum sativum HOM05D000071 ORTHO05D022797 2.7e-18 98.6 152 46.1
SEGI_04707 Sequoiadendron giganteum HOM05D005316 ORTHO05D006495 3.3e-16 91.7 75 58.7
RcHm_v2.0_Chr7g0191891 Rosa chinensis HOM05D005316 ORTHO05D006495 9.6e-16 90.1 74 58.1
SEGI_05684 Sequoiadendron giganteum HOM05D005316 ORTHO05D006495 9.6e-16 90.1 109 48.6
PGSC0003DMG400013159 Solanum tuberosum HOM05D005316 ORTHO05D006495 1.1e-14 86.7 69 65.2
RcHm_v2.0_Chr7g0191911 Rosa chinensis HOM05D005316 ORTHO05D006495 1.5e-13 82.8 63 61.9
Solyc09g018530.3 Solanum lycopersicum HOM05D005316 ORTHO05D006495 5.0e-12 77.8 88 48.9
Solyc09g018520.1 Solanum lycopersicum HOM05D005316 ORTHO05D006495 4.3e-08 64.7 92 42.4
CANSAT78G1202 Cannabis sativa HOM05D000836 ORTHO05D000709 1.6e-07 62.8 151 27.2
Oeu047676.1 Olea europaea HOM05D000645 ORTHO05D000494 2.8e-07 62.0 175 32.0
PGSC0003DMG400036928 Solanum tuberosum HOM05D005316 ORTHO05D006495 8.2e-07 60.5 102 42.2
Psat3g191240 Pisum sativum HOM05D005316 ORTHO05D006495 1.1e-06 60.1 62 48.4
Cfa003664 Carpinus fangiana HOM05D005316 ORTHO05D006495 1.8e-06 59.3 64 48.4
Eucgr.I00228 Eucalyptus grandis HOM05D000645 ORTHO05D000494 2.4e-06 58.9 118 33.9
HPP92_009307 Vanilla planifolia HOM05D000645 ORTHO05D000494 3.1e-06 58.5 119 26.1
BcaB01g03760 Brassica carinata HOM05D000526 ORTHO05D000956 4.1e-06 58.2 190 23.2


User provided reference genes

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