Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PSO063G1810 Papaver somniferum HOM05D002281 ORTHO05D006774 0.0e+00 1621.3 898 100.0
PSO017G1794 Papaver somniferum HOM05D002281 ORTHO05D006774 0.0e+00 1516.9 898 93.7
Aqoxy2G03815 Aquilegia oxysepala HOM05D002281 ORTHO05D006774 0.0e+00 1273.8 903 74.8
CSS0040843 Camellia sinensis var. sinensis HOM05D002281 ORTHO05D006774 0.0e+00 1271.9 852 77.1
Nn3g19861 Nelumbo nucifera HOM05D002281 ORTHO05D006774 0.0e+00 1271.5 816 79.5
GSVIVG01026351001 Vitis vinifera HOM05D002281 ORTHO05D006774 0.0e+00 1267.7 828 76.6
MSTRG.27429 Avicennia marina HOM05D002281 ORTHO05D006774 0.0e+00 1264.2 829 77.3
Eucgr.B02168 Eucalyptus grandis HOM05D002281 ORTHO05D006774 0.0e+00 1263.8 826 80.0
Migut.F02048 Erythranthe guttata HOM05D002281 ORTHO05D006774 0.0e+00 1257.7 817 79.7
Actinidia06827 Actinidia chinensis HOM05D002281 ORTHO05D006774 0.0e+00 1253.8 827 76.8
Manes.09G145600 Manihot esculenta HOM05D002281 ORTHO05D006774 0.0e+00 1253.8 825 79.2
Nitab4.5_0006530g0020 Nicotiana tabacum HOM05D002281 ORTHO05D006774 0.0e+00 1253.8 821 80.4
RcHm_v2.0_Chr3g0448921 Rosa chinensis HOM05D002281 ORTHO05D006774 0.0e+00 1253.4 837 80.2
Nitab4.5_0001498g0040 Nicotiana tabacum HOM05D002281 ORTHO05D006774 0.0e+00 1252.7 821 80.4
Sed0014107 Sechium edule HOM05D002281 ORTHO05D006774 0.0e+00 1243.8 854 77.3
Atru.chr2.1137 Acer truncatum HOM05D002281 ORTHO05D006774 0.0e+00 1243.4 833 80.4
FvH4_6g01350 Fragaria vesca HOM05D002281 ORTHO05D006774 0.0e+00 1243.4 839 80.0
Sopen04g021370 Solanum pennellii HOM05D002281 ORTHO05D006774 0.0e+00 1242.6 822 79.2
Solyc04g050540.4 Solanum lycopersicum HOM05D002281 ORTHO05D006774 0.0e+00 1241.5 822 79.1
TAR365G0274 Trochodendron aralioides HOM05D002281 ORTHO05D006774 0.0e+00 1239.6 817 79.6
Oeu001246.1 Olea europaea HOM05D002281 ORTHO05D006774 0.0e+00 1239.2 813 76.8
CANSAT54G2391 Cannabis sativa HOM05D002281 ORTHO05D006774 0.0e+00 1237.6 853 78.4
TWI60G1049 Tripterygium wilfordii HOM05D002281 ORTHO05D006774 0.0e+00 1236.1 822 77.9
MELO3C010108.2 Cucumis melo HOM05D002281 ORTHO05D006774 0.0e+00 1235.7 813 79.5
CAN.G131.14 Capsicum annuum HOM05D002281 ORTHO05D006774 0.0e+00 1232.6 820 78.3
PGR142G3453 Punica granatum HOM05D002281 ORTHO05D006774 0.0e+00 1232.6 832 77.9
Ciclev10023441m.g Citrus clementina HOM05D002281 ORTHO05D006774 0.0e+00 1231.9 829 78.0
CsaV3_1G044940 Cucumis sativus L. HOM05D002281 ORTHO05D006774 0.0e+00 1231.5 858 76.2
SGA_v2.0_scaffold62G21474 Striga asiatica HOM05D002281 ORTHO05D006774 0.0e+00 1230.3 887 72.5
Gohir.A13G103100 Gossypium hirsutum HOM05D002281 ORTHO05D006774 0.0e+00 1229.9 815 78.8
Gohir.D13G106200 Gossypium hirsutum HOM05D002281 ORTHO05D006774 0.0e+00 1228.8 815 78.8
COL.COLO4_38180 Corchorus olitorius HOM05D002281 ORTHO05D006774 0.0e+00 1228.4 814 76.4
FAN05G1240 Fragaria x ananassa HOM05D002281 ORTHO05D005599 0.0e+00 1227.6 837 79.5
FAN14G5004 Fragaria x ananassa HOM05D002281 ORTHO05D005599 0.0e+00 1227.6 851 78.5
Thecc.05G264900 Theobroma cacao HOM05D002281 ORTHO05D006774 0.0e+00 1227.6 815 78.5
FAN14G3852 Fragaria x ananassa HOM05D002281 ORTHO05D006774 0.0e+00 1226.8 849 78.6
FAN09G1447 Fragaria x ananassa HOM05D002281 ORTHO05D005599 0.0e+00 1225.7 836 79.4
Gorai.013G119100 Gossypium raimondii HOM05D002281 ORTHO05D006774 0.0e+00 1225.7 815 78.7
FAN05G1274 Fragaria x ananassa HOM05D002281 ORTHO05D005599 0.0e+00 1223.8 840 79.0
THA.LOC104820754 Tarenaya hassleriana HOM05D002281 ORTHO05D006774 0.0e+00 1222.2 845 76.1
Lalb_Chr21g0311311 Lupinus albus HOM05D002281 ORTHO05D006774 0.0e+00 1220.3 823 76.2
MD04G1234900 Malus domestica HOM05D002281 ORTHO05D006774 0.0e+00 1220.3 831 80.1
Sp3g03170 Schrenkiella parvula HOM05D002281 ORTHO05D006774 0.0e+00 1215.3 842 75.2
Thhalv10020015m.g Eutrema salsugineum HOM05D002281 ORTHO05D006774 0.0e+00 1214.9 841 74.9
Potri.019G025100 Populus trichocarpa HOM05D002281 ORTHO05D006774 0.0e+00 1212.6 837 79.0
AL3G14240 Arabidopsis lyrata HOM05D002281 ORTHO05D006774 0.0e+00 1209.9 843 74.6
CARHR078410 Cardamine hirsuta HOM05D002281 ORTHO05D006774 0.0e+00 1209.5 841 74.9
Ca_09982_v3 Cicer arietinum L. HOM05D002281 ORTHO05D006774 0.0e+00 1208.7 829 76.2
Carub.0003s0347 Capsella rubella HOM05D002281 ORTHO05D006774 0.0e+00 1208.0 842 75.1
AT3G04260 Arabidopsis thaliana HOM05D002281 ORTHO05D006774 0.0e+00 1206.4 841 74.7
Medtr1g079525 Medicago truncatula HOM05D002281 ORTHO05D006774 0.0e+00 1204.9 822 76.9
Lj2C48G13 Lonicera japonica HOM05D002281 ORTHO05D006774 0.0e+00 1204.1 813 76.0
BraA01t04526Z Brassica rapa HOM05D002281 ORTHO05D006774 0.0e+00 1201.4 851 74.1
BcaC09g47811 Brassica carinata HOM05D002281 ORTHO05D006774 0.0e+00 1201.0 843 74.5
Cfa006305 Carpinus fangiana HOM05D002281 ORTHO05D006774 0.0e+00 1200.7 814 75.7
Psat6g141840 Pisum sativum HOM05D002281 ORTHO05D006774 0.0e+00 1199.9 822 77.1
VMungo0720G2591 Vigna mungo HOM05D002281 ORTHO05D006774 0.0e+00 1194.5 821 76.6
arahy.Tifrunner.gnm1.ann1.BY82ZN Arachis hypogaea HOM05D002281 ORTHO05D006774 0.0e+00 1190.6 838 75.2
DCAR_027530 Daucus carota HOM05D002281 ORTHO05D006774 0.0e+00 1187.9 825 74.3
Phvul.L002432 Phaseolus vulgaris HOM05D002281 ORTHO05D006774 0.0e+00 1187.9 821 76.1
ATR0787G153 Amborella trichopoda HOM05D002281 ORTHO05D006774 0.0e+00 1187.2 815 76.7
TPR.G31600 Trifolium pratense HOM05D002281 ORTHO05D006774 0.0e+00 1183.3 819 76.2
Peaxi162Scf00071g00258 Petunia axillaris HOM05D002281 ORTHO05D006774 0.0e+00 1181.0 820 76.5
Glyma.20G221100 Glycine max HOM05D002281 ORTHO05D006774 0.0e+00 1180.6 824 76.0
Glyma.10G168600 Glycine max HOM05D002281 ORTHO05D006774 0.0e+00 1169.5 821 76.2
Prupe.6G354700 Prunus persica HOM05D002281 ORTHO05D006774 0.0e+00 1169.1 813 73.4
Lj5g0010111 Lotus japonicus HOM05D002281 ORTHO05D006774 0.0e+00 1168.3 829 74.1
Aa31LG5G14740 Aethionema arabicum HOM05D002281 ORTHO05D006774 0.0e+00 1165.2 849 72.4
BcaNung04817 Brassica carinata HOM05D002281 ORTHO05D006774 0.0e+00 1156.0 845 72.4
HanXRQChr14g0434631 Helianthus annuus HOM05D002281 ORTHO05D006774 0.0e+00 1140.9 817 69.8
Dinv05783 Davidia involucrata HOM05D002281 ORTHO05D006774 0.0e+00 1135.6 827 73.9
AUR62006996 Chenopodium quinoa HOM05D002281 ORTHO05D006774 0.0e+00 1116.7 830 71.0
ECA238G3638 Erigeron canadensis HOM05D002281 ORTHO05D006774 0.0e+00 1115.1 804 68.8
Lsat_1_v5_gn_2_16580 Lactuca sativa HOM05D002281 ORTHO05D006774 0.0e+00 1114.8 819 69.8
Os10g0462800 Oryza sativa ssp. japonica HOM05D002281 ORTHO05D006774 0.0e+00 1111.3 823 69.9
AUR62000641 Chenopodium quinoa HOM05D002281 ORTHO05D006774 0.0e+00 1109.7 897 64.5
Sabra19G0034700 Salix brachista HOM05D002281 ORTHO05D006774 0.0e+00 1108.6 840 73.3
EL10Ac4g09786 Beta vulgaris HOM05D002281 ORTHO05D006774 0.0e+00 1102.8 889 68.3
Zm00001eb046590 Zea mays HOM05D002281 ORTHO05D006774 0.0e+00 1101.7 825 69.9
Hund07166 Selenicereus undatus HOM05D002281 ORTHO05D006774 0.0e+00 1095.1 827 71.7
unitig_899.g14420 Utricularia gibba HOM05D002281 ORTHO05D006774 0.0e+00 1094.3 830 70.4
arahy.Tifrunner.gnm1.ann1.76MSW2 Arachis hypogaea HOM05D002281 ORTHO05D006774 0.0e+00 1082.0 836 70.5
A01p40910 Brassica napus HOM05D002281 ORTHO05D006774 9.1e-306 1053.5 747 73.6
BNapus_Darmor_BZH_scaffold_78p00800 Brassica napus HOM05D002281 ORTHO05D006774 9.1e-306 1053.5 747 73.6
HPP92_025553 Vanilla planifolia HOM05D002281 ORTHO05D006774 8.0e-278 960.7 831 64.7
Sc16g0010030 Simmondsia chinensis HOM05D002281 ORTHO05D006774 1.5e-252 876.7 624 76.0
Hma1.2p1_0123F.1_g058110 Hydrangea macrophylla HOM05D002281 ORTHO05D006774 3.3e-247 859.0 552 78.1
SEGI_16679 Sequoiadendron giganteum HOM05D002281 ORTHO05D006774 1.2e-246 857.1 832 54.1
Sabra19G0037700 Salix brachista HOM05D002281 ORTHO05D006774 1.4e-237 827.0 618 75.1
CiPaw.07G076800 Carya illinoinensis HOM05D002281 ORTHO05D006774 5.2e-237 825.1 482 83.2
AagrBONN_evm.TU.Sc2ySwM_368.3437 Anthoceros agrestis HOM05D002281 ORTHO05D006774 2.1e-233 813.1 814 53.6
Cc09_g03090 Coffea canephora HOM05D002281 ORTHO05D006774 2.7e-233 812.8 495 80.4
Hma1.2p1_0123F.1_g058100 Hydrangea macrophylla HOM05D002281 ORTHO05D006774 2.1e-217 760.0 519 74.8
Mapoly0031s0123 Marchantia polymorpha HOM05D002281 ORTHO05D006774 2.7e-217 759.6 811 50.8
ClCG03G011380 Citrullus lanatus HOM05D002281 ORTHO05D006774 3.8e-203 712.6 498 78.5
Pp3c1_8170 Physcomitrium patens HOM05D002281 ORTHO05D006774 1.5e-191 674.1 814 47.2
CDE02G2074 Ceratophyllum demersum HOM05D002281 ORTHO05D006774 3.2e-186 656.4 484 70.5
SMO367G1266 Selaginella moellendorffii HOM05D002281 ORTHO05D006774 7.2e-186 655.2 832 43.4
Haze_04484 Corylus avellana HOM05D002281 ORTHO05D006774 2.5e-178 630.2 558 65.6
vmacro19967 Vaccinium macrocarpon HOM05D002281 ORTHO05D006774 8.8e-168 595.1 466 71.0
Rhsim05G0169000 Rhododendron simsii HOM05D002281 ORTHO05D006774 1.4e-157 561.2 411 71.3
CBR_g7996 Chara braunii HOM05D002281 ORTHO05D006774 2.5e-146 523.9 834 36.5
Cc00_g32050 Coffea canephora HOM05D002281 ORTHO05D006774 8.7e-123 445.7 347 69.5
QL03p033056 Quercus lobata HOM05D002281 ORTHO05D006774 1.9e-98 364.8 209 84.7
Cpa.g.sc51.34 Carica papaya HOM05D002281 ORTHO05D006774 1.0e-94 352.4 214 81.3
CDE02G1511 Ceratophyllum demersum HOM05D002281 ORTHO05D006774 1.1e-93 349.0 202 84.7
Cpa.g.sc51.36 Carica papaya HOM05D002281 ORTHO05D006774 4.6e-92 343.6 306 69.9
vmacro19969 Vaccinium macrocarpon HOM05D002281 ORTHO05D006774 3.3e-90 337.4 229 73.8
Haze_04483 Corylus avellana HOM05D002281 ORTHO05D006774 1.0e-83 315.8 197 80.2
ClCG03G011350 Citrullus lanatus HOM05D002281 ORTHO05D006774 3.0e-83 314.3 193 80.8
Hma1.2p1_0123F.1_g058090 Hydrangea macrophylla HOM05D002281 ORTHO05D006774 2.5e-82 311.2 195 80.0
Actinidia39975 Actinidia chinensis HOM05D002281 ORTHO05D006774 1.7e-81 308.5 197 78.7
Ah.13g065840 Amaranthus hybridus HOM05D002281 ORTHO05D006774 2.5e-77 294.7 228 68.0
CiPaw.07G076900 Carya illinoinensis HOM05D002281 ORTHO05D006774 8.2e-73 279.6 188 72.3
ClCG03G011370 Citrullus lanatus HOM05D002281 ORTHO05D006774 3.5e-47 194.5 111 84.7
AL685U10020 Arabidopsis lyrata HOM05D002281 ORTHO05D006774 6.6e-46 190.3 126 77.0
Hma1.2p1_0463F.1_g158160 Hydrangea macrophylla HOM05D002281 ORTHO05D006774 8.6e-46 189.9 129 73.6
vmacro19968 Vaccinium macrocarpon HOM05D002281 ORTHO05D006774 1.6e-44 185.7 111 78.4
FAN14G5351 Fragaria x ananassa HOM05D002281 ORTHO05D006774 2.1e-44 185.3 156 64.1
Actinidia39977 Actinidia chinensis HOM05D002281 ORTHO05D006774 1.0e-43 183.0 144 59.7
Sopen01g022760 Solanum pennellii HOM05D002281 ORTHO05D006774 4.7e-36 157.5 202 48.0
QL03p032920 Quercus lobata HOM05D002281 ORTHO05D006774 5.2e-35 154.1 98 80.6
Cpa.g.sc51.35 Carica papaya HOM05D002281 ORTHO05D006774 2.6e-34 151.8 87 83.9
QL03p033074 Quercus lobata HOM05D002281 ORTHO05D006774 5.8e-34 150.6 90 85.6
Solyc01g015200.1 Solanum lycopersicum HOM05D002281 ORTHO05D006774 7.8e-23 113.6 167 40.1
Solyc01g016930.1 Solanum lycopersicum HOM05D002281 ORTHO05D006774 2.1e-20 105.5 82 67.1
RcHm_v2.0_Chr1g0330901 Rosa chinensis HOM05D002281 ORTHO05D006774 1.1e-19 103.2 69 72.5
Solyc01g013970.1 Solanum lycopersicum HOM05D002281 ORTHO05D006774 2.6e-18 98.6 87 52.9
CDE08G0752 Ceratophyllum demersum HOM05D002281 ORTHO05D006774 5.8e-18 97.4 65 70.8
Actinidia39976 Actinidia chinensis HOM05D002281 ORTHO05D006774 3.7e-17 94.7 59 79.7
Solyc01g014000.1 Solanum lycopersicum HOM05D002281 ORTHO05D006774 5.4e-16 90.9 65 70.8
Solyc01g016920.1 Solanum lycopersicum HOM05D002281 ORTHO05D006774 1.7e-14 85.9 53 77.4
Os10g0460900 Oryza sativa ssp. japonica HOM05D006403 ORTHO05D008130 1.5e-13 82.8 72 58.3
Os10g0461100 Oryza sativa ssp. japonica HOM05D002933 ORTHO05D007742 1.5e-13 82.8 72 58.3
Solyc01g016870.1 Solanum lycopersicum HOM05D002281 ORTHO05D006774 7.3e-13 80.5 49 79.6
BolC1t05755H Brassica oleracea HOM05D002281 ORTHO05D006774 9.5e-13 80.1 60 68.3
BraA01t04528Z Brassica rapa HOM05D002281 ORTHO05D006774 2.9e-09 68.6 49 75.5
CSS0012562 Camellia sinensis var. sinensis HOM05D002281 ORTHO05D006774 4.9e-09 67.8 101 49.5
Cre12.g497350 Chlamydomonas reinhardtii HOM05D002281 ORTHO05D006774 1.1e-08 66.6 230 25.2
BolC1t05758H Brassica oleracea HOM05D002281 ORTHO05D006774 7.1e-08 63.9 42 76.2
ClCG10G018100 Citrullus lanatus HOM05D006596 ORTHO05D008497 3.5e-07 61.6 197 25.9
TPR.G31597 Trifolium pratense HOM05D002281 ORTHO05D006774 3.5e-07 61.6 38 73.7
FvH4_6g01352 Fragaria vesca HOM05D002281 ORTHO05D006774 8.7e-06 57.0 94 55.3


User provided reference genes

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