Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PSO017G7154 Papaver somniferum HOM05D004329 ORTHO05D005516 0.0e+00 1165.2 597 100.0
PSO478G2811 Papaver somniferum HOM05D004329 ORTHO05D005516 0.0e+00 1152.5 597 98.7
PSO081G0143 Papaver somniferum HOM05D004329 ORTHO05D005516 8.4e-308 1059.7 597 92.0
Nn4g22142 Nelumbo nucifera HOM05D004329 ORTHO05D005516 3.0e-265 918.3 599 77.8
TAR374G0799 Trochodendron aralioides HOM05D004329 ORTHO05D005516 5.2e-265 917.5 600 78.3
Aqoxy4G00231 Aquilegia oxysepala HOM05D004329 ORTHO05D005516 5.3e-262 907.5 597 76.7
vmacro19178 Vaccinium macrocarpon HOM05D004329 ORTHO05D005516 1.3e-255 886.3 601 74.0
Duzib205G0720 Durio zibethinus HOM05D004329 ORTHO05D005516 1.7e-255 885.9 600 74.0
Cfa018712 Carpinus fangiana HOM05D004329 ORTHO05D005516 4.1e-254 881.3 600 74.7
Sc22g0003470 Simmondsia chinensis HOM05D004329 ORTHO05D005516 4.1e-254 881.3 600 73.8
Atru.chr6.1908 Acer truncatum HOM05D004329 ORTHO05D005516 5.4e-254 880.9 600 74.2
Rhsim08G0196600 Rhododendron simsii HOM05D004329 ORTHO05D005516 1.2e-253 879.8 601 74.0
MD14G1148000 Malus domestica HOM05D004329 ORTHO05D005516 2.0e-253 879.0 603 74.8
Thecc.03G139600 Theobroma cacao HOM05D004329 ORTHO05D005516 3.5e-253 878.2 600 73.5
QL10p000650 Quercus lobata HOM05D004329 ORTHO05D005516 5.9e-253 877.5 589 76.1
Haze_07104 Corylus avellana HOM05D004329 ORTHO05D005516 2.2e-252 875.5 624 72.6
Gohir.D07G051400 Gossypium hirsutum HOM05D004329 ORTHO05D005516 2.9e-252 875.2 602 73.1
TWI39G0623 Tripterygium wilfordii HOM05D004329 ORTHO05D005516 1.5e-251 872.8 600 73.5
Dinv23217 Davidia involucrata HOM05D004329 ORTHO05D005516 2.5e-251 872.1 603 73.3
CSS0022050 Camellia sinensis var. sinensis HOM05D004329 ORTHO05D005516 4.2e-251 871.3 601 73.4
Prupe.5G142700 Prunus persica HOM05D004329 ORTHO05D005516 9.5e-251 870.2 603 73.5
CANSAT80G0883 Cannabis sativa HOM05D004329 ORTHO05D005516 2.1e-250 869.0 591 73.9
Hma1.2p1_0493F.1_g164990 Hydrangea macrophylla HOM05D004329 ORTHO05D005516 6.1e-250 867.5 599 73.3
Gorai.001G054500 Gossypium raimondii HOM05D004329 ORTHO05D005516 8.0e-250 867.1 616 71.4
CANSAT80G0741 Cannabis sativa HOM05D004329 ORTHO05D005516 1.0e-249 866.7 592 74.0
Sopen03g024820 Solanum pennellii HOM05D004329 ORTHO05D005516 1.8e-249 865.9 603 73.5
Actinidia18306 Actinidia chinensis HOM05D004329 ORTHO05D005516 2.3e-249 865.5 601 72.7
Potri.015G105600 Populus trichocarpa HOM05D004329 ORTHO05D005516 2.3e-249 865.5 600 72.8
vmacro06162 Vaccinium macrocarpon HOM05D004329 ORTHO05D005516 4.0e-249 864.8 601 72.7
Gohir.A07G047200 Gossypium hirsutum HOM05D004329 ORTHO05D005516 5.2e-249 864.4 608 71.7
MD06G1131700 Malus domestica HOM05D004329 ORTHO05D005516 6.8e-249 864.0 594 74.4
CAN.G1210.1 Capsicum annuum HOM05D004329 ORTHO05D005516 3.4e-248 861.7 603 73.1
Ciclev10031005m.g Citrus clementina HOM05D004329 ORTHO05D005516 3.4e-248 861.7 600 72.7
Solyc03g093970.3 Solanum lycopersicum HOM05D004329 ORTHO05D005516 4.4e-248 861.3 603 73.1
Solyc02g062810.4 Solanum lycopersicum HOM05D004329 ORTHO05D005516 5.7e-248 860.9 603 73.3
Sopen02g013850 Solanum pennellii HOM05D004329 ORTHO05D005516 5.7e-248 860.9 603 73.1
Nitab4.5_0007718g0050 Nicotiana tabacum HOM05D004329 ORTHO05D005516 9.8e-248 860.1 604 72.8
ATR1096G004 Amborella trichopoda HOM05D004329 ORTHO05D005516 6.3e-247 857.4 600 72.3
TPR.G12807 Trifolium pratense HOM05D004329 ORTHO05D005516 1.8e-246 855.9 605 71.7
Potri.012G106200 Populus trichocarpa HOM05D004329 ORTHO05D005516 2.4e-246 855.5 600 71.7
GSVIVG01008641001 Vitis vinifera HOM05D004329 ORTHO05D005516 3.1e-246 855.1 599 73.3
EL10Ac7g17942 Beta vulgaris HOM05D004329 ORTHO05D005516 7.0e-246 854.0 599 73.0
Medtr8g100110 Medicago truncatula HOM05D004329 ORTHO05D005516 9.2e-246 853.6 605 71.2
RcHm_v2.0_Chr7g0188791 Rosa chinensis HOM05D004329 ORTHO05D005516 1.2e-245 853.2 601 72.7
Actinidia36840 Actinidia chinensis HOM05D004329 ORTHO05D005516 5.9e-245 850.9 601 71.4
ClCG03G012650 Citrullus lanatus HOM05D004329 ORTHO05D005516 1.0e-244 850.1 593 73.2
Peaxi162Scf00935g00018 Petunia axillaris HOM05D004329 ORTHO05D005516 1.7e-244 849.4 602 72.9
Psat7g039240 Pisum sativum HOM05D004329 ORTHO05D005516 1.7e-244 849.4 605 70.9
CsaV3_1G043340 Cucumis sativus L. HOM05D004329 ORTHO05D005516 2.9e-244 848.6 593 72.8
Eucgr.F03808 Eucalyptus grandis HOM05D004329 ORTHO05D005516 2.9e-244 848.6 598 72.1
FAN18G1836 Fragaria x ananassa HOM05D004329 ORTHO05D005516 2.9e-244 848.6 593 72.7
Ca_16811_v3 Cicer arietinum L. HOM05D004329 ORTHO05D005516 3.8e-244 848.2 605 71.2
MELO3C015126.2 Cucumis melo HOM05D004329 ORTHO05D005516 1.1e-243 846.7 593 72.8
FvH4_5g09400 Fragaria vesca HOM05D004329 ORTHO05D005516 1.9e-243 845.9 593 72.5
Migut.I00617 Erythranthe guttata HOM05D004329 ORTHO05D005516 4.3e-243 844.7 601 72.2
SGA_v2.0_scaffold74G24730 Striga asiatica HOM05D004329 ORTHO05D005516 4.3e-243 844.7 620 70.8
Thhalv10003854m.g Eutrema salsugineum HOM05D004329 ORTHO05D005516 9.5e-243 843.6 602 70.6
Manes.06G126200 Manihot esculenta HOM05D004329 ORTHO05D005516 2.8e-242 842.0 601 71.0
MSTRG.22850 Avicennia marina HOM05D004329 ORTHO05D005516 4.7e-242 841.3 601 71.9
Sed0013101 Sechium edule HOM05D004329 ORTHO05D005516 4.7e-242 841.3 593 72.7
Lj4g0026438 Lotus japonicus HOM05D004329 ORTHO05D005516 8.0e-242 840.5 605 70.6
CiPaw.09G139600 Carya illinoinensis HOM05D004329 ORTHO05D005516 1.0e-241 840.1 567 74.4
FAN13G1968 Fragaria x ananassa HOM05D004329 ORTHO05D005516 1.0e-241 840.1 616 70.6
Sed0023904 Sechium edule HOM05D004329 ORTHO05D005516 1.0e-241 840.1 594 72.7
A06p28670 Brassica napus HOM05D004329 ORTHO05D005516 1.4e-241 839.7 600 70.2
Sabra15G0125900 Salix brachista HOM05D004329 ORTHO05D005516 1.4e-241 839.7 648 67.3
BraA06t25807Z Brassica rapa HOM05D004329 ORTHO05D005516 3.0e-241 838.6 600 70.0
THA.LOC104823903 Tarenaya hassleriana HOM05D004329 ORTHO05D005516 4.0e-241 838.2 598 70.7
BcaB02g09609 Brassica carinata HOM05D004329 ORTHO05D005516 6.8e-241 837.4 600 70.3
Lalb_Chr07g0183781 Lupinus albus HOM05D004329 ORTHO05D005516 6.8e-241 837.4 596 71.8
Lsat_1_v5_gn_4_84600 Lactuca sativa HOM05D004329 ORTHO05D005516 8.9e-241 837.0 604 70.7
BcaC01g02451 Brassica carinata HOM05D004329 ORTHO05D005516 2.0e-240 835.9 600 69.7
C03p65130 Brassica napus HOM05D004329 ORTHO05D005516 2.0e-240 835.9 600 69.7
BolC3t18767H Brassica oleracea HOM05D004329 ORTHO05D005516 2.0e-240 835.9 600 69.7
Aa31LG11G1550 Aethionema arabicum HOM05D004329 ORTHO05D005516 5.7e-240 834.3 600 70.3
Lj5A87T69 Lonicera japonica HOM05D004329 ORTHO05D005516 7.5e-240 833.9 595 71.3
VMungo0251G1423 Vigna mungo HOM05D004329 ORTHO05D005516 2.9e-239 832.0 605 70.4
Sp2g25150 Schrenkiella parvula HOM05D004329 ORTHO05D005516 3.7e-239 831.6 600 70.3
BraA02t09122Z Brassica rapa HOM05D004329 ORTHO05D005516 6.4e-239 830.9 598 70.2
THA.LOC104819422 Tarenaya hassleriana HOM05D004329 ORTHO05D005516 8.3e-239 830.5 598 70.1
BolC2t12235H Brassica oleracea HOM05D004329 ORTHO05D005516 3.2e-238 828.6 597 69.8
ECA232G2772 Erigeron canadensis HOM05D004329 ORTHO05D005516 3.2e-238 828.6 591 70.7
PGR083G0006 Punica granatum HOM05D004329 ORTHO05D005516 4.1e-238 828.2 591 70.4
Glyma.05G200600 Glycine max HOM05D004329 ORTHO05D005516 7.0e-238 827.4 605 70.4
Phvul.002G282000 Phaseolus vulgaris HOM05D004329 ORTHO05D005516 2.0e-237 825.9 605 69.4
AL8G38730 Arabidopsis lyrata HOM05D004329 ORTHO05D005516 3.5e-237 825.1 602 69.1
Carub.0008s2266 Capsella rubella HOM05D004329 ORTHO05D005516 3.5e-237 825.1 600 70.0
arahy.Tifrunner.gnm1.ann1.IBL9WM Arachis hypogaea HOM05D004329 ORTHO05D005516 1.7e-236 822.8 597 71.0
COL.COLO4_37247 Corchorus olitorius HOM05D004329 ORTHO05D005516 3.0e-236 822.0 620 68.4
Oeu012844.2 Olea europaea HOM05D004329 ORTHO05D005516 5.0e-236 821.2 657 65.4
arahy.Tifrunner.gnm1.ann1.HJ5J7F Arachis hypogaea HOM05D004329 ORTHO05D005516 1.1e-235 820.1 596 70.8
HanXRQChr09g0273891 Helianthus annuus HOM05D004329 ORTHO05D005516 4.3e-235 818.1 595 69.9
DCAR_016350 Daucus carota HOM05D004329 ORTHO05D005516 1.8e-233 812.8 601 69.2
Dinv13728 Davidia involucrata HOM05D004329 ORTHO05D005516 1.8e-233 812.8 570 73.2
Carub.0005s0295 Capsella rubella HOM05D004329 ORTHO05D005516 2.3e-233 812.4 599 68.6
AT5G61970 Arabidopsis thaliana HOM05D004329 ORTHO05D005516 2.0e-232 809.3 590 69.2
FAN04G0329 Fragaria x ananassa HOM05D004329 ORTHO05D005516 7.0e-230 800.8 601 70.0
Hund02504 Selenicereus undatus HOM05D004329 ORTHO05D005516 3.5e-229 798.5 548 73.9
Sabra12G0078600 Salix brachista HOM05D004329 ORTHO05D005516 1.0e-228 797.0 681 62.3
Actinidia08906 Actinidia chinensis HOM05D000877 ORTHO05D001509 3.0e-228 795.4 551 72.4
BcaB07g29807 Brassica carinata HOM05D004329 ORTHO05D005516 3.9e-228 795.0 621 66.0
FAN08G1859 Fragaria x ananassa HOM05D004329 ORTHO05D005516 3.1e-225 785.4 564 71.8
Glyma.08G008000 Glycine max HOM05D004329 ORTHO05D005516 3.7e-223 778.5 563 71.2
AUR62041693 Chenopodium quinoa HOM05D004329 ORTHO05D005516 1.2e-221 773.5 591 68.5
AUR62009528 Chenopodium quinoa HOM05D004329 ORTHO05D005516 2.1e-221 772.7 591 69.0
Cpa.g.sc13.162 Carica papaya HOM05D004329 ORTHO05D005516 2.3e-220 769.2 597 67.2
SGA_v2.0_scaffold40G15626 Striga asiatica HOM05D004329 ORTHO05D005516 4.0e-217 758.4 613 66.1
MBI13_g15007_MAGBIO Magnolia biondii HOM05D004329 ORTHO05D005516 2.6e-216 755.7 502 75.9
SalBow1G7365 Salvia bowleyana HOM05D004329 ORTHO05D005516 1.9e-211 739.6 641 61.8
Zm00001eb327290 Zea mays HOM05D004329 ORTHO05D005516 1.9e-211 739.6 597 63.7
CDE04G3457 Ceratophyllum demersum HOM05D004329 ORTHO05D005516 3.6e-210 735.3 603 65.2
unitig_32.g11043 Utricularia gibba HOM05D004329 ORTHO05D005516 8.1e-210 734.2 655 58.6
SEGI_15405 Sequoiadendron giganteum HOM05D004329 ORTHO05D005516 2.0e-208 729.6 598 63.0
PGSC0003DMG400015501 Solanum tuberosum HOM05D004329 ORTHO05D005516 4.3e-203 711.8 496 73.0
Manes.14G045200 Manihot esculenta HOM05D004329 ORTHO05D005516 4.0e-201 705.3 477 74.6
CARHR275760 Cardamine hirsuta HOM05D004329 ORTHO05D005516 1.8e-196 689.9 476 73.1
AUR62044173 Chenopodium quinoa HOM05D004329 ORTHO05D005516 3.2e-182 642.5 549 63.4
MBI13_g43178_MAGBIO Magnolia biondii HOM05D004329 ORTHO05D005516 6.7e-180 634.8 502 66.7
C02p61780 Brassica napus HOM05D004329 ORTHO05D005516 1.7e-175 620.2 425 73.2
Pp3c15_22190 Physcomitrium patens HOM05D004329 ORTHO05D005516 2.0e-168 596.7 579 54.2
AagrBONN_evm.TU.Sc2ySwM_228.1186 Anthoceros agrestis HOM05D004329 ORTHO05D005516 1.3e-167 594.0 604 52.6
Cc09_g07950 Coffea canephora HOM05D004329 ORTHO05D005516 3.6e-165 585.9 440 67.5
Mapoly0153s0017 Marchantia polymorpha HOM05D004329 ORTHO05D005516 3.3e-163 579.3 588 52.0
Os08g0323000 Oryza sativa ssp. japonica HOM05D004329 ORTHO05D005516 4.8e-154 548.9 439 64.2
CBR_g20988 Chara braunii HOM05D004329 ORTHO05D005516 2.2e-138 496.9 610 46.7
Ah.11g046840 Amaranthus hybridus HOM05D004329 ORTHO05D005516 4.1e-137 492.7 333 75.1
A02p41850 Brassica napus HOM05D004329 ORTHO05D005516 2.1e-133 480.3 366 68.3
SMO356G0738 Selaginella moellendorffii HOM05D004329 ORTHO05D005516 8.9e-132 474.9 576 46.4
HPP92_028710 Vanilla planifolia HOM05D004329 ORTHO05D005516 5.4e-129 465.7 417 60.2
Nitab4.5_0017885g0010 Nicotiana tabacum HOM05D004329 ORTHO05D005516 9.5e-118 428.3 316 69.9
Nitab4.5_0009429g0030 Nicotiana tabacum HOM05D004329 ORTHO05D005516 1.1e-116 424.9 288 75.0
FAN18G2676 Fragaria x ananassa HOM05D004329 ORTHO05D005516 4.6e-112 409.5 527 47.2
CDE07G0688 Ceratophyllum demersum HOM05D004329 ORTHO05D005516 7.5e-107 392.1 248 77.0
Cc00_g30130 Coffea canephora HOM05D004329 ORTHO05D005516 5.2e-100 369.4 274 69.0
Aqoxy5G01090 Aquilegia oxysepala HOM05D004329 ORTHO05D005516 8.9e-100 368.6 435 48.5
TAR622G0210 Trochodendron aralioides HOM05D004329 ORTHO05D005516 6.6e-95 352.4 316 62.0
CDE07G1247 Ceratophyllum demersum HOM05D004329 ORTHO05D005516 5.1e-87 326.2 353 55.2
MBI13_g13130_MAGBIO Magnolia biondii HOM05D004329 ORTHO05D005516 5.5e-73 279.6 181 80.1
Cre06.g267100 Chlamydomonas reinhardtii HOM05D004329 ORTHO05D005516 3.0e-71 273.9 676 31.4
MCO15G338 Micromonas commoda HOM05D004329 ORTHO05D005516 3.8e-66 256.9 557 30.5
Cc09_g07990 Coffea canephora HOM05D004329 ORTHO05D005516 1.7e-58 231.5 152 77.0
BcaC03g18112 Brassica carinata HOM05D004329 ORTHO05D005516 3.8e-58 230.3 153 74.5
Cc09_g07980 Coffea canephora HOM05D004329 ORTHO05D005516 4.2e-57 226.9 152 76.3
PRCOL_00003443 Prasinoderma coloniale HOM05D004329 ORTHO05D005516 9.4e-41 172.6 611 27.2
CSS0034501 Camellia sinensis var. sinensis HOM05D004329 ORTHO05D005516 8.0e-40 169.5 148 60.8
CSS0009974 Camellia sinensis var. sinensis HOM05D004329 ORTHO05D005516 8.8e-39 166.0 125 66.4
Solyc02g062830.2 Solanum lycopersicum HOM05D004329 ORTHO05D005516 5.2e-31 140.2 96 71.9
AagrBONN_evm.TU.Sc2ySwM_228.1281 Anthoceros agrestis HOM05D004329 ORTHO05D005516 1.4e-28 132.1 116 56.0
AagrBONN_evm.TU.Sc2ySwM_228.1280 Anthoceros agrestis HOM05D004329 ORTHO05D005516 7.0e-28 129.8 186 42.5
C02p61790 Brassica napus HOM05D004329 ORTHO05D005516 1.2e-27 129.0 97 64.9
CARHR275770 Cardamine hirsuta HOM05D004329 ORTHO05D005516 4.2e-25 120.6 97 56.7
Haze_22596 Corylus avellana HOM05D004329 ORTHO05D010424 8.3e-21 106.3 69 71.0
Solyc02g062840.1 Solanum lycopersicum HOM05D004329 ORTHO05D005516 1.8e-20 105.1 66 75.8
Cfa027290 Carpinus fangiana HOM05D004329 ORTHO05D121551 9.1e-20 102.8 630 22.7
CAN.G865.5 Capsicum annuum HOM05D004329 ORTHO05D005516 5.9e-19 100.1 69 63.8
Lsat_1_v5_gn_5_81961 Lactuca sativa HOM05D004329 ORTHO05D005516 3.6e-16 90.9 49 85.7
Lsat_1_v5_gn_2_122301 Lactuca sativa HOM05D009063 ORTHO05D011082 1.0e-15 89.4 200 31.5
Lsat_1_v5_gn_8_114301 Lactuca sativa HOM05D004329 ORTHO05D005516 1.8e-15 88.6 48 85.4
Zm00001eb081410 Zea mays HOM05D004902 ORTHO05D006603 2.0e-14 85.1 79 48.1
Hund31053 Selenicereus undatus HOM05D004329 ORTHO05D026010 9.2e-12 76.3 51 78.4
Hund31064 Selenicereus undatus HOM05D004329 ORTHO05D026010 2.7e-11 74.7 51 76.5
CSS0048280 Camellia sinensis var. sinensis HOM05D004329 ORTHO05D005516 7.8e-11 73.2 100 47.0
Zm00001eb202340 Zea mays HOM05D004329 ORTHO05D005516 1.7e-10 72.0 72 44.4
Sopen02g013860 Solanum pennellii HOM05D004329 ORTHO05D026010 1.1e-09 69.3 61 62.3
Solyc04g048930.1 Solanum lycopersicum HOM05D004329 ORTHO05D026010 2.3e-07 61.6 54 59.3
Os08g0323266 Oryza sativa ssp. japonica HOM05D004329 ORTHO05D026010 5.8e-06 57.0 41 63.4


User provided reference genes

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