Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PSO017G5800 Papaver somniferum HOM05D004839 ORTHO05D006012 7.6e-275 950.3 635 100.0
PSO478G1197 Papaver somniferum HOM05D004839 ORTHO05D006012 1.4e-260 902.9 559 97.9
Dinv17400 Davidia involucrata HOM05D004839 ORTHO05D006012 3.1e-175 619.4 575 66.8
Nn4g23407 Nelumbo nucifera HOM05D004839 ORTHO05D006012 2.6e-174 616.3 576 68.1
Dinv10521 Davidia involucrata HOM05D004839 ORTHO05D006012 5.8e-174 615.1 563 66.3
TAR622G0763 Trochodendron aralioides HOM05D004839 ORTHO05D006012 1.1e-172 610.9 574 67.8
TAR374G0643 Trochodendron aralioides HOM05D004839 ORTHO05D006012 1.6e-168 597.0 577 65.5
Eucgr.K02520 Eucalyptus grandis HOM05D004839 ORTHO05D006012 7.6e-166 588.2 578 65.7
QL10p019188 Quercus lobata HOM05D004839 ORTHO05D006012 4.2e-164 582.4 579 64.1
Haze_07703 Corylus avellana HOM05D004839 ORTHO05D006012 2.1e-163 580.1 564 64.0
MBI16_g41829_MAGBIO Magnolia biondii HOM05D004839 ORTHO05D006012 7.9e-163 578.2 500 66.4
Ciclev10019267m.g Citrus clementina HOM05D004839 ORTHO05D006012 4.8e-160 568.9 576 63.0
Gorai.008G198100 Gossypium raimondii HOM05D004839 ORTHO05D006012 1.8e-159 567.0 554 65.2
Gohir.D12G184700 Gossypium hirsutum HOM05D004839 ORTHO05D006012 1.2e-158 564.3 554 65.0
Gohir.A12G181900 Gossypium hirsutum HOM05D004839 ORTHO05D006012 1.5e-158 563.9 554 65.2
TWI81G0494 Tripterygium wilfordii HOM05D004839 ORTHO05D006012 2.2e-157 560.1 587 60.3
Actinidia25779 Actinidia chinensis HOM05D004839 ORTHO05D006012 2.9e-157 559.7 543 63.7
Duzib205G0813 Durio zibethinus HOM05D004839 ORTHO05D006012 1.6e-155 553.9 557 63.6
Atru.chr9.403 Acer truncatum HOM05D004839 ORTHO05D006012 2.7e-155 553.1 573 63.0
Prupe.5G203800 Prunus persica HOM05D004839 ORTHO05D006012 1.0e-154 551.2 465 67.1
Aqoxy3G03618 Aquilegia oxysepala HOM05D004839 ORTHO05D006012 1.4e-154 550.8 573 61.8
PGR044G2204 Punica granatum HOM05D004839 ORTHO05D006012 1.8e-154 550.4 589 60.1
Manes.14G084900 Manihot esculenta HOM05D004839 ORTHO05D006012 3.9e-154 549.3 578 61.2
GSVIVG01007883001 Vitis vinifera HOM05D004839 ORTHO05D006012 2.5e-153 546.6 450 68.9
CiPaw.11G051800 Carya illinoinensis HOM05D004839 ORTHO05D006012 3.3e-153 546.2 574 62.2
Lj1g0002650 Lotus japonicus HOM05D004839 ORTHO05D006012 1.2e-150 537.7 445 66.3
Thecc.03G099900 Theobroma cacao HOM05D004839 ORTHO05D006012 1.5e-150 537.3 408 71.6
EL10Ac5g11115 Beta vulgaris HOM05D004839 ORTHO05D006012 2.6e-150 536.6 572 61.5
Sabra12G0046900 Salix brachista HOM05D004839 ORTHO05D006012 7.7e-150 535.0 572 60.7
Lalb_Chr13g0296121 Lupinus albus HOM05D004839 ORTHO05D006012 1.0e-149 534.6 447 66.4
CSS0002450 Camellia sinensis var. sinensis HOM05D004839 ORTHO05D006012 1.3e-149 534.3 574 60.1
Cc04_g13220 Coffea canephora HOM05D004839 ORTHO05D006012 8.5e-149 531.6 559 60.6
Potri.012G065600 Populus trichocarpa HOM05D004839 ORTHO05D006012 1.1e-148 531.2 465 64.7
arahy.Tifrunner.gnm1.ann1.PN7U9Z Arachis hypogaea HOM05D004839 ORTHO05D006012 2.5e-148 530.0 446 66.8
VMungo1309G1059 Vigna mungo HOM05D004839 ORTHO05D006012 6.1e-147 525.4 439 69.2
arahy.Tifrunner.gnm1.ann1.8FG0EB Arachis hypogaea HOM05D004839 ORTHO05D006012 1.0e-146 524.6 464 64.7
Lalb_Chr07g0184911 Lupinus albus HOM05D004839 ORTHO05D006012 1.0e-146 524.6 569 61.9
Actinidia04835 Actinidia chinensis HOM05D004839 ORTHO05D006012 1.4e-146 524.2 373 73.7
Glyma.06G202100 Glycine max HOM05D004839 ORTHO05D006012 3.0e-146 523.1 432 66.7
AUR62008513 Chenopodium quinoa HOM05D004839 ORTHO05D006012 2.6e-145 520.0 500 60.4
Migut.D01694 Erythranthe guttata HOM05D004839 ORTHO05D006012 5.7e-145 518.8 568 55.8
SalBow5G5272 Salvia bowleyana HOM05D004839 ORTHO05D006012 9.7e-145 518.1 590 56.4
Oeu001010.1 Olea europaea HOM05D004839 ORTHO05D006012 2.2e-144 516.9 457 62.6
Glyma.04G163400 Glycine max HOM05D004839 ORTHO05D006012 6.3e-144 515.4 447 64.2
Phvul.009G192800 Phaseolus vulgaris HOM05D004839 ORTHO05D006012 1.4e-143 514.2 433 69.5
AUR62021577 Chenopodium quinoa HOM05D004839 ORTHO05D006012 4.1e-143 512.7 448 62.9
MSTRG.11357 Avicennia marina HOM05D004839 ORTHO05D006012 9.1e-143 511.5 580 56.0
TPR.G11937 Trifolium pratense HOM05D004839 ORTHO05D006012 2.0e-142 510.4 465 63.0
CDE04G3432 Ceratophyllum demersum HOM05D004839 ORTHO05D006012 2.6e-142 510.0 584 59.9
Manes.06G085750 Manihot esculenta HOM05D004839 ORTHO05D006012 4.5e-142 509.2 631 54.4
MSTRG.22981 Avicennia marina HOM05D004839 ORTHO05D006012 1.3e-141 507.7 410 66.3
Sc04g0004870 Simmondsia chinensis HOM05D004839 ORTHO05D006012 1.7e-141 507.3 572 57.0
THA.LOC104818342 Tarenaya hassleriana HOM05D004839 ORTHO05D006012 2.2e-141 506.9 547 58.5
Ca_02963_v3 Cicer arietinum L. HOM05D004839 ORTHO05D006012 6.5e-141 505.4 387 71.3
MD14G1210500 Malus domestica HOM05D004839 ORTHO05D006012 5.5e-140 502.3 460 62.6
Nitab4.5_0001410g0060 Nicotiana tabacum HOM05D004839 ORTHO05D006012 1.6e-139 500.7 597 59.1
MD06G1201400 Malus domestica HOM05D004839 ORTHO05D006012 2.1e-139 500.4 465 63.0
FAN08G2012 Fragaria x ananassa HOM05D004839 ORTHO05D006012 2.7e-139 500.0 579 61.5
Ah.11g047930 Amaranthus hybridus HOM05D004839 ORTHO05D006012 3.6e-139 499.6 574 58.0
FvH4_5g14030 Fragaria vesca HOM05D004839 ORTHO05D006012 3.6e-139 499.6 578 61.4
Psat0s569g0080 Pisum sativum HOM05D004839 ORTHO05D006012 6.1e-139 498.8 444 63.7
Hund02595 Selenicereus undatus HOM05D004839 ORTHO05D006012 5.7e-137 492.3 399 65.9
HanXRQChr05g0157271 Helianthus annuus HOM05D004839 ORTHO05D006012 7.4e-137 491.9 581 57.0
FAN13G1538 Fragaria x ananassa HOM05D004839 ORTHO05D006012 1.3e-136 491.1 407 68.1
Nitab4.5_0001485g0220 Nicotiana tabacum HOM05D004839 ORTHO05D006012 1.7e-136 490.7 597 58.3
HPP92_018601 Vanilla planifolia HOM05D004839 ORTHO05D006012 2.2e-136 490.3 464 61.0
MELO3C002019.2 Cucumis melo HOM05D004839 ORTHO05D006012 3.7e-136 489.6 465 63.7
Lsat_1_v5_gn_1_13541 Lactuca sativa HOM05D004839 ORTHO05D006012 8.2e-136 488.4 551 55.5
Lj5A104T41 Lonicera japonica HOM05D004839 ORTHO05D006012 8.2e-136 488.4 576 52.4
DCAR_023142 Daucus carota HOM05D004839 ORTHO05D006012 1.4e-135 487.6 594 53.5
ECA246G0121 Erigeron canadensis HOM05D004839 ORTHO05D006012 1.8e-135 487.3 575 55.0
CsaV3_1G005900 Cucumis sativus L. HOM05D000422 ORTHO05D003570 9.1e-135 485.0 465 63.0
RcHm_v2.0_Chr7g0182791 Rosa chinensis HOM05D004839 ORTHO05D006012 9.1e-135 485.0 576 59.7
Solyc03g115240.4 Solanum lycopersicum HOM05D004839 ORTHO05D006012 2.6e-134 483.4 443 62.3
CAN.G479.17 Capsicum annuum HOM05D004839 ORTHO05D006012 3.5e-134 483.0 605 54.7
Sopen03g034280 Solanum pennellii HOM05D004839 ORTHO05D006012 4.5e-134 482.6 443 62.1
ClCG04G011890 Citrullus lanatus HOM05D004839 ORTHO05D006012 5.9e-134 482.3 442 63.3
Peaxi162Scf00201g10021 Petunia axillaris HOM05D004839 ORTHO05D006012 7.7e-134 481.9 396 66.4
Medtr3g024380 Medicago truncatula HOM05D004839 ORTHO05D006012 2.5e-132 476.9 436 64.4
Medtr3g024360 Medicago truncatula HOM05D004839 ORTHO05D006012 1.6e-131 474.2 432 64.8
Lsat_1_v5_gn_5_23161 Lactuca sativa HOM05D004839 ORTHO05D006012 8.8e-130 468.4 563 55.1
Zm00001eb298660 Zea mays HOM05D004839 ORTHO05D006012 2.8e-128 463.4 495 54.9
ATR0064G044 Amborella trichopoda HOM05D004839 ORTHO05D006012 4.8e-128 462.6 355 70.7
Sed0026784 Sechium edule HOM05D004839 ORTHO05D006012 1.8e-127 460.7 398 64.3
Sed0023482 Sechium edule HOM05D004839 ORTHO05D006012 1.0e-125 454.9 458 59.4
Lalb_Chr07g0184901 Lupinus albus HOM05D004839 ORTHO05D006012 8.0e-123 445.3 458 57.2
vmacro16504 Vaccinium macrocarpon HOM05D004839 ORTHO05D006012 1.4e-122 444.5 519 53.8
GSVIVG01007906001 Vitis vinifera HOM05D004839 ORTHO05D006012 1.2e-121 441.4 297 78.8
Zm00001eb118140 Zea mays HOM05D004839 ORTHO05D006012 1.5e-121 441.0 464 56.0
SEGI_03099 Sequoiadendron giganteum HOM05D004839 ORTHO05D006012 3.7e-120 436.4 558 53.4
SGA_v2.0_scaffold114G31924 Striga asiatica HOM05D004839 ORTHO05D006012 1.8e-119 434.1 620 47.7
Os12g0579000 Oryza sativa ssp. japonica HOM05D004839 ORTHO05D006012 2.0e-118 430.6 494 51.8
unitig_749.g13436 Utricularia gibba HOM05D004839 ORTHO05D006012 1.3e-117 427.9 572 47.4
AT5G61150 Arabidopsis thaliana HOM05D004839 ORTHO05D006012 1.6e-115 421.0 550 53.5
Carub.0008s2182 Capsella rubella HOM05D004839 ORTHO05D006012 8.0e-115 418.7 427 57.6
Aa31LG11G2200 Aethionema arabicum HOM05D004839 ORTHO05D006012 5.0e-109 399.4 570 52.5
Sp2g24400 Schrenkiella parvula HOM05D004839 ORTHO05D006012 2.1e-107 394.0 554 52.0
AL8G37800 Arabidopsis lyrata HOM05D004839 ORTHO05D006012 8.0e-107 392.1 576 52.3
CARHR274840 Cardamine hirsuta HOM05D004839 ORTHO05D006012 8.9e-106 388.7 546 51.3
Thhalv10003808m.g Eutrema salsugineum HOM05D004839 ORTHO05D006012 2.0e-105 387.5 558 52.9
A09p07230 Brassica napus HOM05D004839 ORTHO05D006012 4.9e-104 382.9 556 49.3
BcaC04g23462 Brassica carinata HOM05D004839 ORTHO05D006012 7.0e-103 379.0 553 51.5
C09p08080 Brassica napus HOM05D004839 ORTHO05D006012 1.2e-102 378.3 553 51.2
BolC9t53722H Brassica oleracea HOM05D004839 ORTHO05D006012 1.2e-102 378.3 553 51.2
COL.COLO4_37593 Corchorus olitorius HOM05D004839 ORTHO05D006012 4.6e-102 376.3 402 57.0
BolC2t12188H Brassica oleracea HOM05D004839 ORTHO05D006012 1.6e-99 367.9 395 55.7
C02p61390 Brassica napus HOM05D004839 ORTHO05D006012 2.1e-99 367.5 482 50.4
Nn030s41597 Nelumbo nucifera HOM05D004839 ORTHO05D006012 2.3e-98 364.0 238 84.5
BraA09t36373Z Brassica rapa HOM05D004839 ORTHO05D006012 1.7e-93 347.8 551 50.6
A02p41460 Brassica napus HOM05D004839 ORTHO05D006012 3.0e-93 347.1 559 46.3
Gohir.D12G082100 Gossypium hirsutum HOM05D004839 ORTHO05D006012 1.2e-91 341.7 387 59.7
Os07g0109600 Oryza sativa ssp. japonica HOM05D004839 ORTHO05D006012 1.2e-91 341.7 492 50.2
Os03g0756500 Oryza sativa ssp. japonica HOM05D004839 ORTHO05D006012 4.7e-91 339.7 337 55.2
Gohir.D13G091100 Gossypium hirsutum HOM05D004839 ORTHO05D006012 1.4e-90 338.2 388 59.8
Gohir.D07G141700 Gossypium hirsutum HOM05D004839 ORTHO05D006012 1.8e-90 337.8 387 59.4
Gohir.D12G082302 Gossypium hirsutum HOM05D004839 ORTHO05D006012 1.8e-90 337.8 387 59.4
AagrBONN_evm.TU.Sc2ySwM_228.780 Anthoceros agrestis HOM05D004839 ORTHO05D006012 2.0e-89 334.3 319 58.9
MBI05_g39010_MAGBIO Magnolia biondii HOM05D004839 ORTHO05D006012 2.1e-86 324.3 466 51.1
Pp3c14_2440 Physcomitrium patens HOM05D004839 ORTHO05D006012 4.6e-86 323.2 354 52.0
Mapoly0001s0516 Marchantia polymorpha HOM05D004839 ORTHO05D006012 6.6e-85 319.3 339 54.3
SMO301G0010 Selaginella moellendorffii HOM05D004839 ORTHO05D006012 1.7e-72 278.1 370 45.9
MSTRG.22984 Avicennia marina HOM05D004839 ORTHO05D006012 2.3e-69 267.7 299 49.5
SGA_v2.0_scaffold313G48307 Striga asiatica HOM05D004839 ORTHO05D006012 3.9e-69 266.9 369 47.2
Migut.I00327 Erythranthe guttata HOM05D004839 ORTHO05D006012 1.4e-66 258.5 384 45.3
CBR_g54910 Chara braunii HOM05D004839 ORTHO05D000002 4.0e-58 230.3 371 44.2
Oeu001821.1 Olea europaea HOM05D004839 ORTHO05D006012 2.9e-56 224.2 312 44.2
MBI05_g05675_MAGBIO Magnolia biondii HOM05D004839 ORTHO05D006012 3.1e-50 204.1 503 38.0
RhsimUnG0229200 Rhododendron simsii HOM05D004839 ORTHO05D006012 6.7e-45 186.4 192 58.9
arahy.Tifrunner.gnm1.ann1.YGY8HB Arachis hypogaea HOM05D010000 ORTHO05D006012 5.9e-41 173.3 167 56.3
MD06G1201100 Malus domestica HOM05D004839 ORTHO05D006012 2.5e-39 167.9 136 69.9
Lsat_1_v5_gn_3_57821 Lactuca sativa HOM05D004839 ORTHO05D006012 3.0e-37 161.0 103 72.8
MCO04G392 Micromonas commoda HOM05D004839 ORTHO05D006012 2.7e-30 137.9 316 33.5
Gohir.D01G045700 Gossypium hirsutum HOM05D004839 ORTHO05D006012 3.9e-29 134.0 351 41.9
Oeu022173.1 Olea europaea HOM05D004839 ORTHO05D006012 5.7e-28 130.2 352 34.9
Oeu008253.1 Olea europaea HOM05D004839 ORTHO05D006012 2.8e-27 127.9 208 43.3
SalBow5G1942 Salvia bowleyana HOM05D004839 ORTHO05D006012 2.0e-25 121.7 302 34.4
Cre16.g694204 Chlamydomonas reinhardtii HOM05D004839 ORTHO05D006012 5.2e-21 107.1 324 27.2
MD06G1201000 Malus domestica HOM05D004839 ORTHO05D006012 1.6e-17 95.5 61 73.8
Cpa.g.c41089 Carica papaya HOM05D004839 ORTHO05D006012 1.9e-15 88.6 89 51.7
Peaxi162Scf00201g00231 Petunia axillaris HOM05D004839 ORTHO05D006012 2.5e-15 88.2 53 75.5
arahy.Tifrunner.gnm1.ann1.WE96GU Arachis hypogaea HOM05D004839 ORTHO05D006012 2.7e-14 84.7 150 42.7
Peaxi162Scf00201g00230 Petunia axillaris HOM05D004839 ORTHO05D006012 4.8e-11 73.9 41 80.5
MD06G1200900 Malus domestica HOM05D004839 ORTHO05D006012 8.5e-08 63.2 131 38.9


User provided reference genes

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