Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PSO017G5363 Papaver somniferum HOM05D004739 ORTHO05D005784 0.0e+00 1959.1 973 100.0
PSO675G2609 Papaver somniferum HOM05D004739 ORTHO05D005784 0.0e+00 1832.8 970 93.8
TAR365G0018 Trochodendron aralioides HOM05D004739 ORTHO05D005784 0.0e+00 1217.2 980 64.0
Aqoxy2G04008 Aquilegia oxysepala HOM05D004739 ORTHO05D005784 0.0e+00 1156.0 986 61.3
GSVIVG01031656001 Vitis vinifera HOM05D004739 ORTHO05D005784 0.0e+00 1115.1 980 59.4
Duzib212G0770 Durio zibethinus HOM05D004739 ORTHO05D005784 0.0e+00 1087.0 970 59.1
COL.COLO4_08079 Corchorus olitorius HOM05D004739 ORTHO05D005784 1.3e-310 1069.7 1012 56.8
Potri.002G233800 Populus trichocarpa HOM05D004739 ORTHO05D005784 2.1e-308 1062.4 1025 55.4
Sabra02G0178500 Salix brachista HOM05D004739 ORTHO05D005784 4.4e-306 1054.7 1016 54.8
Gorai.005G127900 Gossypium raimondii HOM05D004739 ORTHO05D005784 1.7e-305 1052.7 972 57.6
Thecc.04G186700 Theobroma cacao HOM05D004739 ORTHO05D005784 1.7e-305 1052.7 906 60.2
CANSAT78G1796 Cannabis sativa HOM05D004739 ORTHO05D005784 1.5e-301 1039.6 984 53.8
Manes.05G194701 Manihot esculenta HOM05D004739 ORTHO05D005784 5.6e-301 1037.7 981 55.4
CSS0046373 Camellia sinensis var. sinensis HOM05D004739 ORTHO05D005784 1.1e-299 1033.5 974 56.3
Eucgr.H00464 Eucalyptus grandis HOM05D004739 ORTHO05D005784 6.8e-299 1030.8 998 55.5
Ciclev10004261m.g Citrus clementina HOM05D004739 ORTHO05D005784 1.2e-298 1030.0 971 56.4
Sc13g0008930 Simmondsia chinensis HOM05D004739 ORTHO05D005784 1.5e-298 1029.6 1007 53.0
QL06p027729 Quercus lobata HOM05D004739 ORTHO05D005784 3.2e-296 1021.9 1056 52.8
HanXRQChr07g0204631 Helianthus annuus HOM05D004739 ORTHO05D005784 7.1e-296 1020.8 967 55.9
Hma1.2p1_1286F.1_g273220 Hydrangea macrophylla HOM05D004739 ORTHO05D005784 1.5e-293 1013.1 745 66.8
RcHm_v2.0_Chr4g0410481 Rosa chinensis HOM05D004739 ORTHO05D005784 1.5e-293 1013.1 968 56.1
ATR1145G086 Amborella trichopoda HOM05D004739 ORTHO05D005784 4.3e-293 1011.5 986 54.2
TWI73G0948 Tripterygium wilfordii HOM05D004739 ORTHO05D005784 1.4e-291 1006.5 924 56.2
FvH4_4g12370 Fragaria vesca HOM05D004739 ORTHO05D005784 5.2e-291 1004.6 1001 54.6
Lj6A353T83 Lonicera japonica HOM05D004739 ORTHO05D005784 5.8e-290 1001.1 1002 53.6
Gohir.D02G113000 Gossypium hirsutum HOM05D004739 ORTHO05D005784 1.3e-289 1000.0 972 55.8
FAN12G0062 Fragaria x ananassa HOM05D004739 ORTHO05D005784 1.7e-289 999.6 969 55.7
MELO3C022216.2 Cucumis melo HOM05D004739 ORTHO05D005784 4.1e-288 995.0 973 53.1
Hund11729 Selenicereus undatus HOM05D004739 ORTHO05D005784 1.6e-287 993.0 988 52.1
FAN07G0434 Fragaria x ananassa HOM05D004739 ORTHO05D005784 6.0e-287 991.1 970 55.5
FAN12G0551 Fragaria x ananassa HOM05D004739 ORTHO05D005784 2.3e-286 989.2 1001 54.2
Lalb_Chr10g0092061 Lupinus albus HOM05D004739 ORTHO05D005784 3.9e-286 988.4 975 53.0
Ah.07g206800 Amaranthus hybridus HOM05D004739 ORTHO05D005784 2.5e-285 985.7 979 52.3
CsaV3_5G040440 Cucumis sativus L. HOM05D004739 ORTHO05D005784 4.7e-284 981.5 969 53.1
SalBow3G0652 Salvia bowleyana HOM05D004739 ORTHO05D005784 6.2e-284 981.1 974 52.8
ECA248G0146 Erigeron canadensis HOM05D004739 ORTHO05D005784 3.1e-283 978.8 969 54.4
THA.LOC104805833 Tarenaya hassleriana HOM05D004739 ORTHO05D005784 7.6e-282 974.2 966 52.8
AUR62021147 Chenopodium quinoa HOM05D004739 ORTHO05D005784 9.9e-282 973.8 979 51.4
vmacro15619 Vaccinium macrocarpon HOM05D004739 ORTHO05D005784 2.9e-281 972.2 1099 50.1
Lsat_1_v5_gn_1_69581 Lactuca sativa HOM05D004739 ORTHO05D005784 6.4e-281 971.1 974 54.3
Medtr7g022220 Medicago truncatula HOM05D004739 ORTHO05D005784 5.4e-280 968.0 972 52.8
Sopen09g036290 Solanum pennellii HOM05D004739 ORTHO05D005784 7.1e-280 967.6 1005 51.1
Solyc09g098370.4 Solanum lycopersicum HOM05D004739 ORTHO05D005784 2.1e-279 966.1 1005 51.2
Lj6C358T14 Lonicera japonica HOM05D004739 ORTHO05D005784 3.9e-278 961.8 973 53.6
Actinidia38940 Actinidia chinensis HOM05D004739 ORTHO05D005784 7.3e-277 957.6 980 53.1
arahy.Tifrunner.gnm1.ann1.F9LJYJ Arachis hypogaea HOM05D004739 ORTHO05D005784 1.4e-275 953.4 962 52.1
DCAR_023801 Daucus carota HOM05D004739 ORTHO05D005784 3.1e-275 952.2 963 52.1
MSTRG.24599 Avicennia marina HOM05D004739 ORTHO05D005784 6.9e-275 951.0 969 52.0
Psat3g188160 Pisum sativum HOM05D004739 ORTHO05D005784 1.2e-274 950.3 974 52.1
Sed0003398 Sechium edule HOM05D004739 ORTHO05D005784 4.5e-274 948.3 972 51.9
PGR142G4233 Punica granatum HOM05D004739 ORTHO05D005784 3.2e-272 942.2 979 52.7
Migut.N00187 Erythranthe guttata HOM05D004739 ORTHO05D005784 4.2e-272 941.8 920 53.6
Lj1g0022138 Lotus japonicus HOM05D004739 ORTHO05D005784 1.3e-270 936.8 984 50.2
Glyma.18G283900 Glycine max HOM05D004739 ORTHO05D005784 1.1e-269 933.7 972 51.3
Cc03_g10760 Coffea canephora HOM05D004739 ORTHO05D005784 1.3e-268 930.2 754 60.1
Phvul.008G017600 Phaseolus vulgaris HOM05D004739 ORTHO05D005784 3.6e-268 928.7 973 51.3
Peaxi162Scf00286g00338 Petunia axillaris HOM05D004739 ORTHO05D005784 5.3e-267 924.9 1007 49.7
Os06g0171800 Oryza sativa ssp. japonica HOM05D004739 ORTHO05D005784 3.4e-266 922.2 984 49.8
Nitab4.5_0007057g0010 Nicotiana tabacum HOM05D004739 ORTHO05D005784 4.9e-265 918.3 1026 49.6
arahy.Tifrunner.gnm1.ann1.WHDV72 Arachis hypogaea HOM05D004739 ORTHO05D005784 3.5e-263 912.1 962 50.6
AUR62031390 Chenopodium quinoa HOM05D004739 ORTHO05D005784 1.0e-262 910.6 987 49.3
FAN22G0233 Fragaria x ananassa HOM05D004739 ORTHO05D005784 1.8e-262 909.8 967 52.6
Zm00001eb375390 Zea mays HOM05D004739 ORTHO05D005784 6.7e-262 907.9 981 49.6
HPP92_024268 Vanilla planifolia HOM05D004739 ORTHO05D005784 1.5e-261 906.7 976 50.8
Sp1g35310 Schrenkiella parvula HOM05D004739 ORTHO05D005784 2.8e-260 902.5 972 50.0
Aa31LG10G5400 Aethionema arabicum HOM05D004739 ORTHO05D005784 1.4e-259 900.2 969 50.5
Carub.0001s3748 Capsella rubella HOM05D004739 ORTHO05D005784 6.9e-259 897.9 967 49.5
VMungo1383G1195 Vigna mungo HOM05D004739 ORTHO05D005784 3.4e-258 895.6 971 49.4
C08p05140 Brassica napus HOM05D004739 ORTHO05D005784 1.2e-255 887.1 979 49.2
BcaC07g37141 Brassica carinata HOM05D004739 ORTHO05D005784 1.3e-254 883.6 995 48.6
BolC8t47324H Brassica oleracea HOM05D004739 ORTHO05D005784 3.9e-254 882.1 979 49.2
Thhalv10011221m.g Eutrema salsugineum HOM05D004739 ORTHO05D005784 1.5e-253 880.2 996 48.2
AL1G54960 Arabidopsis lyrata HOM05D004739 ORTHO05D005784 2.5e-253 879.4 968 49.6
SGA_v2.0_scaffold550G52871 Striga asiatica HOM05D004739 ORTHO05D005784 2.5e-253 879.4 1004 49.8
A08p04770 Brassica napus HOM05D004739 ORTHO05D005784 3.3e-253 879.0 758 56.7
Oeu006039.1 Olea europaea HOM05D004739 ORTHO05D005784 1.8e-251 873.2 938 50.5
BraA08t32506Z Brassica rapa HOM05D004739 ORTHO05D005784 1.2e-250 870.5 1022 47.5
ClCG08G000320 Citrullus lanatus HOM05D004739 ORTHO05D005784 1.9e-248 863.2 689 61.0
EL10Ac3g05589 Beta vulgaris HOM05D004739 ORTHO05D005784 4.2e-248 862.1 904 50.9
Nitab4.5_0008073g0020 Nicotiana tabacum HOM05D004739 ORTHO05D005784 6.1e-247 858.2 996 48.2
HPP92_024254 Vanilla planifolia HOM05D004739 ORTHO05D005784 3.3e-245 852.4 972 48.5
Cpa.g.sc8.308 Carica papaya HOM05D004739 ORTHO05D005784 9.7e-245 850.9 978 49.4
MBI11_g12232_MAGBIO Magnolia biondii HOM05D004739 ORTHO05D005784 5.0e-241 838.6 573 71.0
Rhsim02G0071300 Rhododendron simsii HOM05D004739 ORTHO05D005784 1.5e-237 827.0 948 49.3
CiPaw.01G109700 Carya illinoinensis HOM05D004739 ORTHO05D005784 6.5e-233 811.6 831 53.2
Ca_07125_v3 Cicer arietinum L. HOM05D004739 ORTHO05D005784 1.2e-226 790.8 699 57.4
Hma1.2p1_1286F.1_g273230 Hydrangea macrophylla HOM05D004739 ORTHO05D005784 9.7e-221 771.2 529 71.3
BcaB04g17436 Brassica carinata HOM05D004739 ORTHO05D005784 1.0e-214 751.1 970 44.9
CDE02G3320 Ceratophyllum demersum HOM05D004739 ORTHO05D005784 1.3e-212 744.2 980 44.1
CAN.G710.49 Capsicum annuum HOM05D004739 ORTHO05D005784 5.4e-211 738.8 553 64.0
Atru.BG.162.p Acer truncatum HOM05D004739 ORTHO05D005784 5.4e-203 712.2 461 73.5
AagrBONN_evm.TU.Sc2ySwM_344.4128 Anthoceros agrestis HOM05D004739 ORTHO05D002352 3.7e-196 689.5 1033 39.8
Pp3c5_2670 Physcomitrium patens HOM05D004739 ORTHO05D005784 1.2e-194 684.5 1148 37.7
AT1G48360 Arabidopsis thaliana HOM05D004739 ORTHO05D005784 3.0e-193 679.9 826 46.2
Mapoly0005s0042 Marchantia polymorpha HOM05D004739 ORTHO05D005784 6.8e-190 668.7 885 41.9
Gohir.A03G095900 Gossypium hirsutum HOM05D004739 ORTHO05D005784 1.3e-188 664.5 747 50.7
MD09G1250400 Malus domestica HOM05D004739 ORTHO05D005784 2.0e-186 657.1 481 68.8
SMO203G0018 Selaginella moellendorffii HOM05D004739 ORTHO05D005784 5.6e-184 649.0 976 39.9
Prupe.1G176700 Prunus persica HOM05D004739 ORTHO05D005784 1.2e-183 647.9 768 49.5
SEGI_11980 Sequoiadendron giganteum HOM05D004739 ORTHO05D005784 2.2e-172 610.5 608 51.5
SMO331G0089 Selaginella moellendorffii HOM05D004739 ORTHO05D005784 4.2e-163 579.7 719 44.1
SMO327G0027 Selaginella moellendorffii HOM05D004739 ORTHO05D005784 2.5e-160 570.5 879 39.4
unitig_8.g4743 Utricularia gibba HOM05D004739 ORTHO05D003440 5.1e-153 546.2 1027 35.7
SMO327G0004 Selaginella moellendorffii HOM05D004739 ORTHO05D005784 3.1e-150 537.0 822 40.1
SMO110G0012 Selaginella moellendorffii HOM05D004739 ORTHO05D005784 1.7e-140 504.6 975 34.3
TPR.G22177 Trifolium pratense HOM05D004739 ORTHO05D005784 3.8e-140 503.4 313 75.4
SMO331G0087 Selaginella moellendorffii HOM05D004739 ORTHO05D005784 6.0e-138 496.1 480 51.0
Dinv31047 Davidia involucrata HOM05D004739 ORTHO05D005784 2.5e-136 490.7 442 58.1
Dinv31053 Davidia involucrata HOM05D004739 ORTHO05D005784 2.5e-136 490.7 442 58.1
SMO327G0008 Selaginella moellendorffii HOM05D004739 ORTHO05D005784 7.6e-133 479.2 739 40.1
MD00G1163900 Malus domestica HOM05D004739 ORTHO05D005784 2.9e-132 477.2 278 79.9
SMO110G0011 Selaginella moellendorffii HOM05D004739 ORTHO05D005784 7.7e-125 452.6 648 41.5
Glyma.08G259832 Glycine max HOM05D004739 ORTHO05D005784 3.8e-116 423.7 364 57.7
CARHR037970 Cardamine hirsuta HOM05D004739 ORTHO05D005784 2.0e-109 401.4 641 39.0
TAR365G0620 Trochodendron aralioides HOM05D004739 ORTHO05D005784 3.5e-109 400.6 449 51.0
Dinv31052 Davidia involucrata HOM05D004739 ORTHO05D005784 5.5e-107 393.3 490 46.5
SMO252G0014 Selaginella moellendorffii HOM05D004739 ORTHO05D005784 1.5e-99 368.6 834 31.9
CSS0028447 Camellia sinensis var. sinensis HOM05D004739 ORTHO05D005784 4.0e-97 360.5 313 59.4
SMO110G0002 Selaginella moellendorffii HOM05D004739 ORTHO05D005784 3.8e-92 344.0 787 32.5
SMO331G0064 Selaginella moellendorffii HOM05D004739 ORTHO05D005784 6.1e-90 336.7 621 36.4
Cre16.g660350 Chlamydomonas reinhardtii HOM05D004739 ORTHO05D005784 1.9e-83 315.1 425 40.7
PRCOL_00003987 Prasinoderma coloniale HOM05D004739 ORTHO05D005784 2.4e-78 298.1 652 31.6
SHI06489 Sapria himalayana HOM05D004739 ORTHO05D000023 7.0e-78 296.6 460 40.2
TPR.G2930 Trifolium pratense HOM05D004739 ORTHO05D005784 5.2e-73 280.4 409 39.4
PGSC0003DMG400021624 Solanum tuberosum HOM05D004739 ORTHO05D005784 7.5e-72 276.6 160 76.9
CBR_g39432 Chara braunii HOM05D004739 ORTHO05D005784 2.7e-69 268.1 270 50.7
MD09G1250200 Malus domestica HOM05D004739 ORTHO05D005784 6.2e-66 256.9 411 38.2
Haze_11712 Corylus avellana HOM05D004739 ORTHO05D005784 5.8e-64 250.4 139 81.3
SMO252G0017 Selaginella moellendorffii HOM05D004739 ORTHO05D005784 6.0e-53 213.8 191 52.4
Cfa022531 Carpinus fangiana HOM05D004739 ORTHO05D121730 2.4e-49 201.8 718 26.0
MCO01G753 Micromonas commoda HOM05D004739 ORTHO05D005784 4.0e-49 201.1 761 26.7
Cfa015247 Carpinus fangiana HOM05D004739 ORTHO05D005784 1.5e-48 199.1 141 67.4
CAN.G710.48 Capsicum annuum HOM05D003943 ORTHO05D004753 3.4e-48 198.0 426 34.7
FAN17G2248 Fragaria x ananassa HOM05D004739 ORTHO05D005784 1.4e-46 192.6 164 58.5
SMO331G0063 Selaginella moellendorffii HOM05D004739 ORTHO05D005784 5.4e-46 190.7 159 53.5
TPR.G2943 Trifolium pratense HOM05D004739 ORTHO05D005784 1.1e-41 176.4 168 53.0
SEGI_19061 Sequoiadendron giganteum HOM05D004739 ORTHO05D005784 1.3e-39 169.5 546 28.0
Lj6A353T82 Lonicera japonica HOM05D004739 ORTHO05D005784 2.4e-38 165.2 105 74.3
Actinidia34750 Actinidia chinensis HOM05D004739 ORTHO05D005784 9.3e-38 163.3 143 59.4
CSS0043638 Camellia sinensis var. sinensis HOM05D004739 ORTHO05D005784 2.1e-37 162.2 150 55.3
CBR_g7993 Chara braunii HOM05D004739 ORTHO05D005784 1.3e-36 159.5 268 34.7
Glyma.16G127800 Glycine max HOM05D004739 ORTHO05D005784 1.5e-32 146.0 89 76.4
SMO331G0066 Selaginella moellendorffii HOM05D004739 ORTHO05D005784 6.4e-31 140.6 604 26.7
Zm00001eb188730 Zea mays HOM05D004739 ORTHO05D005784 1.3e-28 132.9 86 68.6
ClCG08G000310 Citrullus lanatus HOM05D004739 ORTHO05D005784 4.3e-27 127.9 275 34.9
Zm00001eb188740 Zea mays HOM05D004739 ORTHO05D005784 1.8e-25 122.5 84 72.6
Lj6P350T22 Lonicera japonica HOM05D004739 ORTHO05D005784 6.9e-25 120.6 120 50.8
CSS0002286 Camellia sinensis var. sinensis HOM05D004739 ORTHO05D005784 2.1e-21 109.0 82 68.3
CAN.G1076.10 Capsicum annuum HOM05D004739 ORTHO05D005784 1.8e-20 105.9 70 68.6
Glyma.08G259766 Glycine max HOM05D004739 ORTHO05D005784 1.4e-12 79.7 109 40.4
BolC1t05400H Brassica oleracea HOM05D000493 ORTHO05D001355 3.9e-12 78.2 64 56.2
Cc03_g10750 Coffea canephora HOM05D004739 ORTHO05D005784 5.7e-11 74.3 107 43.0
CSS0015609 Camellia sinensis var. sinensis HOM05D004739 ORTHO05D005784 2.2e-10 72.4 182 33.0
SMO110G0004 Selaginella moellendorffii HOM05D004739 ORTHO05D005784 6.9e-09 67.4 71 47.9
Lj6P352T60 Lonicera japonica HOM05D004739 ORTHO05D005784 7.7e-08 63.9 74 47.3
EL10Ac3g05590 Beta vulgaris HOM05D004739 ORTHO05D005784 6.5e-07 60.8 94 38.3
Prupe.1G176800 Prunus persica HOM05D000257 ORTHO05D009310 9.4e-06 57.0 125 34.4


User provided reference genes

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