Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PSO017G4845 Papaver somniferum HOM05D004116 ORTHO05D004734 0.0e+00 1974.9 998 100.0
Haze_14475 Corylus avellana HOM05D004116 ORTHO05D004734 3.1e-214 749.6 1035 45.2
Actinidia26244 Actinidia chinensis HOM05D004116 ORTHO05D004734 4.1e-214 749.2 1029 45.5
Dinv11490 Davidia involucrata HOM05D004116 ORTHO05D004734 6.5e-212 741.9 1027 46.1
Dinv33806 Davidia involucrata HOM05D004116 ORTHO05D004734 6.5e-212 741.9 1028 45.2
TAR629G1084 Trochodendron aralioides HOM05D004116 ORTHO05D004734 8.5e-212 741.5 1040 45.6
ClCG10G015430 Citrullus lanatus HOM05D004116 ORTHO05D004734 1.9e-211 740.3 1029 44.6
CsaV3_3G041070 Cucumis sativus L. HOM05D004116 ORTHO05D004734 3.2e-211 739.6 1031 44.9
MELO3C009839.2 Cucumis melo HOM05D004116 ORTHO05D004734 5.5e-211 738.8 1030 44.9
vmacro18164 Vaccinium macrocarpon HOM05D004116 ORTHO05D004734 6.1e-210 735.3 1039 45.6
Nn4g23336 Nelumbo nucifera HOM05D004116 ORTHO05D004734 1.1e-208 731.1 1040 45.8
CSS0030715 Camellia sinensis var. sinensis HOM05D004116 ORTHO05D004734 2.6e-208 729.9 1028 44.9
GSVIVG01011484001 Vitis vinifera HOM05D004116 ORTHO05D004734 2.6e-208 729.9 1033 45.8
MD17G1056200 Malus domestica HOM05D004116 ORTHO05D004734 7.4e-208 728.4 1025 45.5
Lj4C115G25 Lonicera japonica HOM05D004116 ORTHO05D004734 3.7e-207 726.1 1025 45.0
Hma1.2p1_0037F.1_g023840 Hydrangea macrophylla HOM05D004116 ORTHO05D004734 1.1e-206 724.5 1039 44.7
Gorai.006G012900 Gossypium raimondii HOM05D004116 ORTHO05D004734 1.8e-206 723.8 1038 44.8
Sed0005067 Sechium edule HOM05D004116 ORTHO05D004734 3.1e-206 723.0 1026 44.4
Gohir.D09G011100 Gossypium hirsutum HOM05D004116 ORTHO05D004734 4.1e-206 722.6 1038 44.7
CiPaw.03G091800 Carya illinoinensis HOM05D004116 ORTHO05D004734 7.0e-206 721.8 1031 44.3
QL02p039609 Quercus lobata HOM05D004116 ORTHO05D004734 7.0e-206 721.8 1030 44.8
QL02p039361 Quercus lobata HOM05D004116 ORTHO05D004734 2.6e-205 719.9 1030 44.7
Cc07_g03830 Coffea canephora HOM05D004116 ORTHO05D004734 5.9e-205 718.8 1022 44.4
Oeu045355.1 Olea europaea HOM05D004116 ORTHO05D004734 1.0e-204 718.0 1027 44.7
Thecc.04G090300 Theobroma cacao HOM05D004116 ORTHO05D004734 1.3e-204 717.6 1036 44.6
Prupe.3G259400 Prunus persica HOM05D004116 ORTHO05D004734 2.2e-204 716.8 1029 44.5
Sc10g0003320 Simmondsia chinensis HOM05D004116 ORTHO05D004734 2.9e-204 716.5 1032 44.2
TWI34G1118 Tripterygium wilfordii HOM05D004116 ORTHO05D004734 8.5e-204 714.9 1018 43.9
TWI60G1537 Tripterygium wilfordii HOM05D004116 ORTHO05D004734 8.5e-204 714.9 1018 43.4
PGR004G0109 Punica granatum HOM05D004116 ORTHO05D004734 3.2e-203 713.0 1026 44.7
PSO063G3309 Papaver somniferum HOM05D004116 ORTHO05D004734 5.5e-203 712.2 1039 44.7
THA.LOC104822346 Tarenaya hassleriana HOM05D004116 ORTHO05D004734 7.2e-203 711.8 1030 44.4
Aa31LG11G14160 Aethionema arabicum HOM05D004116 ORTHO05D004734 2.1e-202 710.3 1032 43.5
CAN.G206.195 Capsicum annuum HOM05D004116 ORTHO05D004734 2.1e-202 710.3 1031 44.1
Thhalv10012542m.g Eutrema salsugineum HOM05D004116 ORTHO05D004734 2.1e-202 710.3 1028 43.9
PSO013G0369 Papaver somniferum HOM05D004116 ORTHO05D004734 3.6e-202 709.5 1039 44.7
Duzib264G1228 Durio zibethinus HOM05D004116 ORTHO05D004734 6.1e-202 708.8 1035 44.2
Atru.chr8.371 Acer truncatum HOM05D004116 ORTHO05D004734 8.0e-202 708.4 1027 44.2
Ciclev10010958m.g Citrus clementina HOM05D004116 ORTHO05D004734 1.4e-201 707.6 1030 43.6
Manes.01G099400 Manihot esculenta HOM05D004116 ORTHO05D004734 1.4e-201 707.6 1023 44.6
AT5G15400 Arabidopsis thaliana HOM05D004116 ORTHO05D004734 1.8e-201 707.2 1030 42.9
Rhsim08G0073200 Rhododendron simsii HOM05D004116 ORTHO05D004734 1.8e-201 707.2 1079 43.2
BolC9t59011H Brassica oleracea HOM05D004116 ORTHO05D004734 3.0e-201 706.4 1032 42.9
DCAR_011063 Daucus carota HOM05D004116 ORTHO05D004734 3.9e-201 706.1 1027 44.0
FvH4_6g47550 Fragaria vesca HOM05D004116 ORTHO05D004734 2.0e-200 703.7 1032 44.2
FAN14G3940 Fragaria x ananassa HOM05D004116 ORTHO05D004734 4.4e-200 702.6 1032 44.1
Aqoxy3G03559 Aquilegia oxysepala HOM05D004116 ORTHO05D004734 5.7e-200 702.2 1017 44.1
C09p61720 Brassica napus HOM05D004116 ORTHO05D004734 5.7e-200 702.2 1031 43.0
Carub.0006s1357 Capsella rubella HOM05D004116 ORTHO05D004734 5.7e-200 702.2 1030 43.1
MD09G1060800 Malus domestica HOM05D004116 ORTHO05D004734 5.7e-200 702.2 1054 43.9
FAN09G3106 Fragaria x ananassa HOM05D004116 ORTHO05D004734 7.4e-200 701.8 1035 44.1
Sp6g28690 Schrenkiella parvula HOM05D004116 ORTHO05D004734 7.4e-200 701.8 1028 43.4
TPR.G26216 Trifolium pratense HOM05D004116 ORTHO05D004734 7.4e-200 701.8 1037 42.5
CARHR197910 Cardamine hirsuta HOM05D004116 ORTHO05D004734 9.7e-200 701.4 1023 43.0
Duzib147G0424 Durio zibethinus HOM05D004116 ORTHO05D004734 9.7e-200 701.4 1033 43.9
Sopen02g033270 Solanum pennellii HOM05D004116 ORTHO05D004734 1.3e-199 701.0 1029 43.8
AL6G26260 Arabidopsis lyrata HOM05D004116 ORTHO05D004734 1.7e-199 700.7 1034 42.8
A02p03010 Brassica napus HOM05D004116 ORTHO05D004734 1.7e-199 700.7 1033 42.6
A10p23490 Brassica napus HOM05D004116 ORTHO05D004734 1.7e-199 700.7 1034 42.5
BraA10t44416Z Brassica rapa HOM05D004116 ORTHO05D004734 1.7e-199 700.7 1034 42.5
Cfa007620 Carpinus fangiana HOM05D004116 ORTHO05D004734 1.7e-199 700.7 1034 43.2
PGSC0003DMG400001440 Solanum tuberosum HOM05D004116 ORTHO05D004734 1.7e-199 700.7 1029 43.7
RcHm_v2.0_Chr2g0166651 Rosa chinensis HOM05D004116 ORTHO05D004734 2.2e-199 700.3 1034 43.8
SGA_v2.0_scaffold4G02415 Striga asiatica HOM05D004116 ORTHO05D004734 2.2e-199 700.3 1029 43.5
Peaxi162Scf00166g00825 Petunia axillaris HOM05D004116 ORTHO05D004734 2.8e-199 699.9 1045 43.6
BraA02t05272Z Brassica rapa HOM05D004116 ORTHO05D004734 6.3e-199 698.7 1031 42.7
Migut.H00657 Erythranthe guttata HOM05D004116 ORTHO05D004734 8.2e-199 698.4 1019 43.6
C02p07680 Brassica napus HOM05D004116 ORTHO05D004734 1.1e-198 698.0 1034 42.7
BolC2t06699H Brassica oleracea HOM05D004116 ORTHO05D004734 1.1e-198 698.0 1034 42.7
Ca_04866_v3 Cicer arietinum L. HOM05D004116 ORTHO05D004734 1.1e-198 698.0 1023 43.3
VMungo0464G1725 Vigna mungo HOM05D004116 ORTHO05D004734 1.1e-198 698.0 1032 43.5
arahy.Tifrunner.gnm1.ann1.M1DWNQ Arachis hypogaea HOM05D004116 ORTHO05D004734 4.1e-198 696.0 1048 42.4
Potri.017G089600 Populus trichocarpa HOM05D004116 ORTHO05D004734 2.0e-197 693.7 1017 43.9
MSTRG.23904 Avicennia marina HOM05D004116 ORTHO05D004734 2.6e-197 693.3 1026 42.7
Lj2g0025037 Lotus japonicus HOM05D004116 ORTHO05D004734 4.5e-197 692.6 1037 43.1
PSO384G2573 Papaver somniferum HOM05D004116 ORTHO05D004734 1.3e-196 691.0 575 65.2
Eucgr.I01989 Eucalyptus grandis HOM05D004116 ORTHO05D004734 1.7e-196 690.6 1031 43.2
PGSC0003DMG400007132 Solanum tuberosum HOM05D004116 ORTHO05D004734 1.7e-196 690.6 990 43.5
Lalb_Chr21g0318471 Lupinus albus HOM05D004116 ORTHO05D004734 2.9e-196 689.9 987 43.5
Glyma.13G059200 Glycine max HOM05D004116 ORTHO05D004734 5.0e-196 689.1 1032 42.3
SGA_v2.0_scaffold413G51160 Striga asiatica HOM05D004116 ORTHO05D004734 8.5e-196 688.3 1017 43.3
Glyma.19G027200 Glycine max HOM05D004116 ORTHO05D004734 1.5e-195 687.6 1029 42.6
BcaC03g13414 Brassica carinata HOM05D004116 ORTHO05D004734 2.5e-195 686.8 1027 42.6
CANSAT64G2358 Cannabis sativa HOM05D004116 ORTHO05D004734 4.2e-195 686.0 1019 44.1
Nitab4.5_0000565g0080 Nicotiana tabacum HOM05D004116 ORTHO05D004734 4.2e-195 686.0 1066 42.8
Phvul.004G033100 Phaseolus vulgaris HOM05D004116 ORTHO05D004734 4.2e-195 686.0 1032 43.1
Gohir.A09G012200 Gossypium hirsutum HOM05D004116 ORTHO05D004734 7.2e-195 685.3 1034 43.2
Potri.004G121200 Populus trichocarpa HOM05D004116 ORTHO05D004734 1.2e-194 684.5 1017 43.5
FAN05G0837 Fragaria x ananassa HOM05D004116 ORTHO05D004734 1.6e-194 684.1 1075 42.8
FAN02G1010 Fragaria x ananassa HOM05D004116 ORTHO05D004734 6.1e-194 682.2 1076 42.7
Medtr6g013690 Medicago truncatula HOM05D004116 ORTHO05D004734 4.4e-192 676.0 1039 41.9
Lsat_1_v5_gn_4_170201 Lactuca sativa HOM05D004116 ORTHO05D004734 3.7e-191 672.9 1023 41.9
Sopen06g031210 Solanum pennellii HOM05D004116 ORTHO05D004734 3.7e-191 672.9 1019 42.5
HanXRQChr15g0488441 Helianthus annuus HOM05D004116 ORTHO05D004734 4.8e-191 672.5 1022 42.2
Lju41A7G39 Lonicera japonica HOM05D004116 ORTHO05D004734 1.1e-190 671.4 1041 42.7
Sabra17G0078900 Salix brachista HOM05D004116 ORTHO05D004734 1.4e-190 671.0 1035 42.5
MBI19_g32361_MAGBIO Magnolia biondii HOM05D004116 ORTHO05D004734 3.1e-190 669.8 1053 43.0
Aqoxy3G01362 Aquilegia oxysepala HOM05D004116 ORTHO05D004734 5.9e-189 665.6 1023 42.6
Nitab4.5_0008573g0070 Nicotiana tabacum HOM05D004116 ORTHO05D004734 5.9e-189 665.6 1069 41.7
COL.COLO4_07430 Corchorus olitorius HOM05D004116 ORTHO05D004734 8.5e-188 661.8 1036 42.1
HPP92_023626 Vanilla planifolia HOM05D004116 ORTHO05D004734 1.9e-187 660.6 977 42.1
HanXRQChr09g0264141 Helianthus annuus HOM05D004116 ORTHO05D004734 4.2e-187 659.4 1025 41.6
arahy.Tifrunner.gnm1.ann1.JWLU7F Arachis hypogaea HOM05D004116 ORTHO05D004734 2.3e-185 653.7 1036 40.9
AUR62018140 Chenopodium quinoa HOM05D004116 ORTHO05D004734 2.2e-183 647.1 879 44.0
ECA232G0495 Erigeron canadensis HOM05D004116 ORTHO05D004734 3.8e-180 636.3 915 42.1
EL10Ac2g03047 Beta vulgaris HOM05D004116 ORTHO05D004734 1.5e-179 634.4 1124 39.0
RcHm_v2.0_Chr5g0047221 Rosa chinensis HOM05D004116 ORTHO05D004734 5.5e-179 632.5 1015 41.4
Os03g0427900 Oryza sativa ssp. japonica HOM05D004116 ORTHO05D004734 1.8e-177 627.5 1027 39.4
ATR0111G012 Amborella trichopoda HOM05D004116 ORTHO05D004734 6.8e-177 625.5 833 44.8
AUR62034478 Chenopodium quinoa HOM05D004116 ORTHO05D004734 4.1e-174 616.3 879 42.7
Solyc06g074770.4 Solanum lycopersicum HOM05D004116 ORTHO05D004734 2.3e-169 600.5 964 40.7
SHI16441 Sapria himalayana HOM05D004116 ORTHO05D004734 5.2e-161 572.8 966 40.3
unitig_744.g24002 Utricularia gibba HOM05D004116 ORTHO05D004734 5.4e-158 562.8 1010 38.3
Cpa.g.sc14.139 Carica papaya HOM05D004116 ORTHO05D004734 1.0e-156 558.5 1031 38.5
Mapoly0052s0078 Marchantia polymorpha HOM05D004116 ORTHO05D004734 2.0e-152 544.3 1045 36.1
Zm00001eb020370 Zea mays HOM05D004116 ORTHO05D004734 2.9e-151 540.4 708 44.8
Zm00001eb393280 Zea mays HOM05D004116 ORTHO05D004734 5.4e-150 536.2 705 44.5
Pp3c15_20630 Physcomitrium patens HOM05D004116 ORTHO05D004734 3.1e-145 520.4 1034 35.9
AagrBONN_evm.TU.Sc2ySwM_340.219 Anthoceros agrestis HOM05D004116 ORTHO05D004734 6.8e-145 519.2 958 37.0
PSO325G0009 Papaver somniferum HOM05D004116 ORTHO05D004734 1.4e-142 511.5 1013 36.3
SMO356G0406 Selaginella moellendorffii HOM05D004116 ORTHO05D004734 2.4e-142 510.8 1035 34.2
Ah.12g062550 Amaranthus hybridus HOM05D004116 ORTHO05D004734 7.8e-141 505.8 727 43.1
PSO144G0086 Papaver somniferum HOM05D004116 ORTHO05D004734 8.7e-140 502.3 1032 35.9
PSO170G0544 Papaver somniferum HOM05D004116 ORTHO05D004734 1.3e-132 478.4 1037 35.2
PSO478G4129 Papaver somniferum HOM05D004116 ORTHO05D004734 1.9e-131 474.6 402 65.7
Hma1.2p1_0604F.1_g187770 Hydrangea macrophylla HOM05D004116 ORTHO05D004734 6.2e-130 469.5 587 47.9
CDE04G3780 Ceratophyllum demersum HOM05D004116 ORTHO05D004734 1.8e-129 468.0 610 43.8
FAN11G2920 Fragaria x ananassa HOM05D004116 ORTHO05D004734 1.9e-123 448.0 1016 33.3
FAN25G2854 Fragaria x ananassa HOM05D004116 ORTHO05D004734 1.2e-120 438.7 967 34.0
PSO761G0054 Papaver somniferum HOM05D004116 ORTHO05D004734 7.6e-120 436.0 668 41.6
Aqoxy3G00661 Aquilegia oxysepala HOM05D004116 ORTHO05D004734 9.3e-110 402.5 546 44.9
Psat1g069120 Pisum sativum HOM05D004116 ORTHO05D004734 4.5e-104 383.6 454 48.9
FvH4_3g25920 Fragaria vesca HOM05D004116 ORTHO05D004734 3.1e-89 334.3 443 44.7
PSO144G0082 Papaver somniferum HOM05D004116 ORTHO05D004734 9.1e-89 332.8 555 39.5
CBR_g12108 Chara braunii HOM05D004116 ORTHO05D004734 8.5e-87 326.2 495 40.8
Solyc02g088550.4 Solanum lycopersicum HOM05D004116 ORTHO05D004734 1.0e-84 319.3 420 46.7
FAN16G3124 Fragaria x ananassa HOM05D004116 ORTHO05D004734 4.8e-82 310.5 464 40.5
CDE07G1255 Ceratophyllum demersum HOM05D006464 ORTHO05D007923 6.3e-74 283.5 392 42.3
PRCOL_00002499 Prasinoderma coloniale HOM05D004116 ORTHO05D004734 9.1e-73 279.6 1045 27.0
BcaC04g24243 Brassica carinata HOM05D004116 ORTHO05D004734 2.0e-72 278.5 359 46.5
FAN17G0761 Fragaria x ananassa HOM05D004116 ORTHO05D004734 1.1e-65 256.1 366 41.8
Aqoxy3G00662 Aquilegia oxysepala HOM05D004116 ORTHO05D004734 2.3e-63 248.4 421 41.3
Psat1g069040 Pisum sativum HOM05D004116 ORTHO05D004734 1.1e-62 246.1 435 37.2
FvH4_3g25930 Fragaria vesca HOM05D004116 ORTHO05D004734 2.5e-62 245.0 569 33.2
FAN09G1300 Fragaria x ananassa HOM05D004116 ORTHO05D004734 1.2e-61 242.7 333 42.6
FAN09G4205 Fragaria x ananassa HOM05D004116 ORTHO05D004734 1.2e-61 242.7 333 42.6
FAN21G0296 Fragaria x ananassa HOM05D004116 ORTHO05D004734 2.6e-59 235.0 370 40.8
SEGI_13711 Sequoiadendron giganteum HOM05D004116 ORTHO05D004734 2.0e-56 225.3 321 42.1
Cre09.g398350 Chlamydomonas reinhardtii HOM05D004116 ORTHO05D004734 1.3e-55 222.6 1041 25.1
BcaNung03312 Brassica carinata HOM05D004116 ORTHO05D004734 1.5e-46 192.6 533 32.3
FAN21G1132 Fragaria x ananassa HOM05D004116 ORTHO05D004734 4.4e-35 154.5 287 35.2
CBR_g12111 Chara braunii HOM05D004116 ORTHO05D004734 7.6e-35 153.7 494 27.3
QL02p039616 Quercus lobata HOM05D004116 ORTHO05D004734 6.2e-29 134.0 283 35.7
MCO05G368 Micromonas commoda HOM05D004116 ORTHO05D004734 8.1e-29 133.7 191 40.3
Lsat_1_v5_gn_8_41201 Lactuca sativa HOM05D004116 ORTHO05D004734 1.1e-28 133.3 191 44.0
Ah.12g062560 Amaranthus hybridus HOM05D004116 ORTHO05D004734 1.8e-28 132.5 291 36.1
Hma1.2p1_1813F.1_g303850 Hydrangea macrophylla HOM05D004116 ORTHO05D004734 1.8e-28 132.5 187 43.3
Actinidia17576 Actinidia chinensis HOM05D000100 ORTHO05D004702 3.8e-26 124.8 111 59.5
Psat1g069080 Pisum sativum HOM05D004116 ORTHO05D004734 1.5e-22 112.8 156 43.6
FAN12G4053 Fragaria x ananassa HOM05D004116 ORTHO05D004734 2.1e-21 109.0 191 37.2
Lsat_1_v5_gn_8_41221 Lactuca sativa HOM05D004116 ORTHO05D004734 3.6e-21 108.2 233 31.3
Actinidia17575 Actinidia chinensis HOM05D004116 ORTHO05D004734 1.1e-20 106.7 125 46.4
Actinidia17574 Actinidia chinensis HOM05D004116 ORTHO05D004734 2.4e-20 105.5 295 34.9
AL1G40200 Arabidopsis lyrata HOM05D004116 ORTHO05D004734 9.0e-20 103.6 84 58.3
FAN16G0041 Fragaria x ananassa HOM05D004116 ORTHO05D004734 1.2e-19 103.2 103 50.5
TAR622G0429 Trochodendron aralioides HOM05D004116 ORTHO05D004734 3.5e-16 91.7 289 29.4
Lsat_1_v5_gn_0_45261 Lactuca sativa HOM05D004116 ORTHO05D004734 2.3e-15 89.0 148 41.9
FAN21G1378 Fragaria x ananassa HOM05D004116 ORTHO05D004734 1.9e-14 85.9 237 32.5
Cre12.g519150 Chlamydomonas reinhardtii HOM05D004874 ORTHO05D006796 4.5e-11 74.7 72 50.0
FAN16G0481 Fragaria x ananassa HOM05D004116 ORTHO05D004734 1.4e-09 69.7 232 31.5
PGSC0003DMG400009904 Solanum tuberosum HOM05D000215 ORTHO05D004644 2.3e-07 62.4 134 32.8
Solyc04g082440.4 Solanum lycopersicum HOM05D000215 ORTHO05D004644 1.1e-06 60.1 127 33.9
Sopen04g036030 Solanum pennellii HOM05D000215 ORTHO05D004644 1.1e-06 60.1 127 33.9
Peaxi162Scf00711g00412 Petunia axillaris HOM05D000215 ORTHO05D004644 1.9e-06 59.3 134 30.6
SEGI_32306 Sequoiadendron giganteum HOM05D000215 ORTHO05D001691 2.5e-06 58.9 111 34.2
SEGI_32588 Sequoiadendron giganteum HOM05D000215 ORTHO05D001691 2.5e-06 58.9 111 34.2
CBR_g50861 Chara braunii HOM05D000019 ORTHO05D000048 4.3e-06 58.2 103 28.2


User provided reference genes

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