Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PSO017G3712 Papaver somniferum HOM05D004464 ORTHO05D005135 4.7e-100 367.9 183 100.0
PSO782G4050 Papaver somniferum HOM05D004464 ORTHO05D005135 1.5e-93 346.3 183 93.4
PSO198G0095 Papaver somniferum HOM05D004464 ORTHO05D005135 2.5e-93 345.5 183 93.4
Gohir.A05G003100 Gossypium hirsutum HOM05D004464 ORTHO05D005135 7.0e-80 300.8 183 79.8
Eucgr.J01412 Eucalyptus grandis HOM05D004464 ORTHO05D005135 1.6e-79 299.7 182 80.2
Duzib150G0689 Durio zibethinus HOM05D004464 ORTHO05D005135 2.7e-79 298.9 183 79.8
Gohir.D05G003500 Gossypium hirsutum HOM05D004464 ORTHO05D005135 4.5e-79 298.1 183 78.7
Gorai.009G003100 Gossypium raimondii HOM05D004464 ORTHO05D005135 4.5e-79 298.1 183 78.7
PSO478G4867 Papaver somniferum HOM05D004464 ORTHO05D005135 5.9e-79 297.7 183 84.7
PGR042G1328 Punica granatum HOM05D004464 ORTHO05D005135 1.3e-78 296.6 183 78.7
Manes.01G100100 Manihot esculenta HOM05D004464 ORTHO05D005135 2.3e-78 295.8 183 79.2
Thecc.01G298100 Theobroma cacao HOM05D004464 ORTHO05D005135 2.3e-78 295.8 183 78.7
Atru.chr12.814 Acer truncatum HOM05D004464 ORTHO05D005135 2.9e-78 295.4 183 77.0
Ciclev10012892m.g Citrus clementina HOM05D004464 ORTHO05D005135 2.9e-78 295.4 183 78.7
Prupe.3G248300 Prunus persica HOM05D004464 ORTHO05D005135 3.8e-78 295.0 183 77.6
MD17G1066400 Malus domestica HOM05D004464 ORTHO05D005135 8.6e-78 293.9 183 77.6
GSVIVG01036537001 Vitis vinifera HOM05D004464 ORTHO05D005135 1.1e-77 293.5 183 77.0
Nitab4.5_0001339g0030 Nicotiana tabacum HOM05D004464 ORTHO05D005135 1.9e-77 292.7 183 77.6
Actinidia26272 Actinidia chinensis HOM05D004464 ORTHO05D005135 2.5e-77 292.4 183 77.0
TAR371G0146 Trochodendron aralioides HOM05D004464 ORTHO05D005135 2.5e-77 292.4 183 76.5
MD09G1075700 Malus domestica HOM05D004464 ORTHO05D005135 4.3e-77 291.6 183 77.0
HanXRQChr15g0490131 Helianthus annuus HOM05D004464 ORTHO05D005135 5.6e-77 291.2 181 77.9
ClCG07G016070 Citrullus lanatus HOM05D004464 ORTHO05D005135 7.3e-77 290.8 182 77.5
CDE10G0456 Ceratophyllum demersum HOM05D004464 ORTHO05D005135 1.6e-76 289.7 183 76.0
CsaV3_4G010040 Cucumis sativus L. HOM05D004464 ORTHO05D005135 1.6e-76 289.7 182 76.9
Nn4g23543 Nelumbo nucifera HOM05D004464 ORTHO05D005135 1.6e-76 289.7 183 76.5
Sopen02g034060 Solanum pennellii HOM05D004464 ORTHO05D005135 2.1e-76 289.3 183 76.5
Glyma.10G232700 Glycine max HOM05D004464 ORTHO05D005135 2.8e-76 288.9 183 74.9
Glyma.20G161600 Glycine max HOM05D004464 ORTHO05D005135 2.8e-76 288.9 183 74.9
Actinidia17608 Actinidia chinensis HOM05D004464 ORTHO05D005135 3.6e-76 288.5 183 76.0
Solyc02g089280.3 Solanum lycopersicum HOM05D004464 ORTHO05D005135 4.7e-76 288.1 183 76.5
SGA_v2.0_scaffold148G36455 Striga asiatica HOM05D004464 ORTHO05D005135 6.1e-76 287.7 183 77.0
Hma1.2p1_1837F.1_g304810 Hydrangea macrophylla HOM05D004464 ORTHO05D005135 1.4e-75 286.6 183 76.5
Phvul.007G072900 Phaseolus vulgaris HOM05D004464 ORTHO05D005135 1.4e-75 286.6 183 75.4
Sabra17G0087000 Salix brachista HOM05D004464 ORTHO05D005135 1.4e-75 286.6 183 74.9
PGSC0003DMG400001469 Solanum tuberosum HOM05D004464 ORTHO05D005135 1.4e-75 286.6 183 75.4
Peaxi162Scf01039g00131 Petunia axillaris HOM05D004464 ORTHO05D005135 3.0e-75 285.4 183 76.0
Sed0009719 Sechium edule HOM05D004464 ORTHO05D005135 3.0e-75 285.4 182 75.8
CSS0016516 Camellia sinensis var. sinensis HOM05D004464 ORTHO05D005135 4.0e-75 285.0 183 76.5
CDE10G0562 Ceratophyllum demersum HOM05D004464 ORTHO05D005135 4.0e-75 285.0 183 76.5
Dinv33871 Davidia involucrata HOM05D004464 ORTHO05D005135 4.0e-75 285.0 183 75.4
Potri.017G101200 Populus trichocarpa HOM05D004464 ORTHO05D005135 4.0e-75 285.0 183 75.4
MSTRG.15432 Avicennia marina HOM05D004464 ORTHO05D005135 5.2e-75 284.6 183 76.0
CSS0037173 Camellia sinensis var. sinensis HOM05D004464 ORTHO05D005135 5.2e-75 284.6 183 76.0
Migut.K00882 Erythranthe guttata HOM05D004464 ORTHO05D005135 5.2e-75 284.6 181 76.2
Potri.004G113600 Populus trichocarpa HOM05D004464 ORTHO05D005135 5.2e-75 284.6 183 74.9
BcaB01g05028 Brassica carinata HOM05D004464 ORTHO05D005135 6.8e-75 284.3 181 75.1
Aa31LG11G13830 Aethionema arabicum HOM05D004464 ORTHO05D005135 8.9e-75 283.9 179 74.9
SalBow1G0807 Salvia bowleyana HOM05D004464 ORTHO05D005135 8.9e-75 283.9 183 76.0
TWI36G0525 Tripterygium wilfordii HOM05D004464 ORTHO05D005135 8.9e-75 283.9 183 73.2
TWI36G0787 Tripterygium wilfordii HOM05D004464 ORTHO05D005135 8.9e-75 283.9 183 73.2
BraA03t10058Z Brassica rapa HOM05D004464 ORTHO05D005135 1.2e-74 283.5 181 74.0
Aa31LG2G910 Aethionema arabicum HOM05D004464 ORTHO05D005135 1.5e-74 283.1 179 74.3
Dinv34904 Davidia involucrata HOM05D004464 ORTHO05D005135 2.0e-74 282.7 183 75.4
FvH4_6g46310 Fragaria vesca HOM05D004464 ORTHO05D005135 2.0e-74 282.7 183 74.9
FAN02G0274 Fragaria x ananassa HOM05D004464 ORTHO05D005135 2.0e-74 282.7 183 74.9
FAN14G2017 Fragaria x ananassa HOM05D004464 ORTHO05D005135 2.0e-74 282.7 183 74.9
A03p07340 Brassica napus HOM05D004464 ORTHO05D005135 2.6e-74 282.3 181 74.0
Cc07_g04530 Coffea canephora HOM05D004464 ORTHO05D005135 2.6e-74 282.3 183 76.5
MBI15_g04989_MAGBIO Magnolia biondii HOM05D004464 ORTHO05D005135 2.6e-74 282.3 183 74.9
MBI15_g11301_MAGBIO Magnolia biondii HOM05D004464 ORTHO05D005135 2.6e-74 282.3 183 74.9
THA.LOC104820981 Tarenaya hassleriana HOM05D004464 ORTHO05D005135 2.6e-74 282.3 181 75.1
Lj3g0020854 Lotus japonicus HOM05D004464 ORTHO05D005135 3.4e-74 282.0 183 74.3
Lj4g0017621 Lotus japonicus HOM05D004464 ORTHO05D005135 3.4e-74 282.0 183 74.3
C03p08530 Brassica napus HOM05D004464 ORTHO05D005135 4.4e-74 281.6 181 73.5
RcHm_v2.0_Chr2g0164761 Rosa chinensis HOM05D004464 ORTHO05D005135 4.4e-74 281.6 183 74.9
TPR.G29907 Trifolium pratense HOM05D004464 ORTHO05D005135 4.4e-74 281.6 183 72.1
CAN.G497.54 Capsicum annuum HOM05D004464 ORTHO05D005135 7.5e-74 280.8 183 75.4
FAN05G3637 Fragaria x ananassa HOM05D004464 ORTHO05D005135 7.5e-74 280.8 183 74.3
FAN09G0031 Fragaria x ananassa HOM05D004464 ORTHO05D005135 9.8e-74 280.4 183 74.3
Hund16239 Selenicereus undatus HOM05D004464 ORTHO05D005135 1.3e-73 280.0 183 73.2
SGA_v2.0_scaffold163G37992 Striga asiatica HOM05D004464 ORTHO05D005135 1.3e-73 280.0 183 75.4
TWI75G1858 Tripterygium wilfordii HOM05D004464 ORTHO05D005135 1.3e-73 280.0 183 72.1
COL.COLO4_21291 Corchorus olitorius HOM05D004464 ORTHO05D005135 1.7e-73 279.6 183 74.3
Lalb_Chr16g0389591 Lupinus albus HOM05D004464 ORTHO05D005135 1.7e-73 279.6 183 73.8
Sabra10G0012000 Salix brachista HOM05D004464 ORTHO05D005135 1.7e-73 279.6 190 72.1
VMungo0720G0545 Vigna mungo HOM05D004464 ORTHO05D005135 1.7e-73 279.6 183 74.9
Sp6g28370 Schrenkiella parvula HOM05D004464 ORTHO05D005135 2.2e-73 279.3 179 74.3
unitig_0.g1789 Utricularia gibba HOM05D004464 ORTHO05D005135 2.9e-73 278.9 182 74.2
arahy.Tifrunner.gnm1.ann1.6V5APJ Arachis hypogaea HOM05D004464 ORTHO05D005135 3.7e-73 278.5 183 73.2
arahy.Tifrunner.gnm1.ann1.AQQ1ZC Arachis hypogaea HOM05D004464 ORTHO05D005135 3.7e-73 278.5 183 73.2
TPR.G23462 Trifolium pratense HOM05D004464 ORTHO05D005135 3.7e-73 278.5 183 71.6
BcaNung02202 Brassica carinata HOM05D004464 ORTHO05D005135 4.9e-73 278.1 181 72.9
DCAR_016093 Daucus carota HOM05D004464 ORTHO05D005135 8.3e-73 277.3 183 73.2
ATR0743G033 Amborella trichopoda HOM05D004464 ORTHO05D005135 1.4e-72 276.6 183 72.7
BcaC03g18447 Brassica carinata HOM05D004464 ORTHO05D005135 1.8e-72 276.2 181 73.5
A02p03200 Brassica napus HOM05D004464 ORTHO05D005135 1.8e-72 276.2 181 73.5
C02p07950 Brassica napus HOM05D004464 ORTHO05D005135 1.8e-72 276.2 181 73.5
BolC2t06718H Brassica oleracea HOM05D004464 ORTHO05D005135 1.8e-72 276.2 181 73.5
BraA02t05291Z Brassica rapa HOM05D004464 ORTHO05D005135 1.8e-72 276.2 181 73.5
Carub.0004s0609 Capsella rubella HOM05D004464 ORTHO05D005135 1.8e-72 276.2 179 74.9
Medtr8g102530 Medicago truncatula HOM05D004464 ORTHO05D005135 1.8e-72 276.2 183 71.0
AL6G26590 Arabidopsis lyrata HOM05D004464 ORTHO05D005135 2.4e-72 275.8 179 73.7
EL10Ac2g04433 Beta vulgaris HOM05D004464 ORTHO05D005135 3.2e-72 275.4 183 72.7
AT5G15750 Arabidopsis thaliana HOM05D004464 ORTHO05D005135 4.1e-72 275.0 181 71.8
CANSAT11G0238 Cannabis sativa HOM05D004464 ORTHO05D005135 4.1e-72 275.0 183 70.5
CANSAT64G2552 Cannabis sativa HOM05D004464 ORTHO05D005135 7.0e-72 274.2 183 70.5
Ah.16g101000 Amaranthus hybridus HOM05D004464 ORTHO05D005135 1.6e-71 273.1 183 73.2
Sc07g0002150 Simmondsia chinensis HOM05D004464 ORTHO05D005135 1.6e-71 273.1 181 72.4
Carub.0006s1390 Capsella rubella HOM05D004464 ORTHO05D005135 2.0e-71 272.7 179 74.3
AUR62009474 Chenopodium quinoa HOM05D004464 ORTHO05D005135 2.0e-71 272.7 183 72.7
Aqoxy3G02935 Aquilegia oxysepala HOM05D004464 ORTHO05D005135 2.7e-71 272.3 183 72.1
Mapoly0007s0196 Marchantia polymorpha HOM05D004464 ORTHO05D005135 7.8e-71 270.8 183 70.5
AUR62023152 Chenopodium quinoa HOM05D004464 ORTHO05D005135 1.0e-70 270.4 183 72.1
CARHR197580 Cardamine hirsuta HOM05D004464 ORTHO05D005135 1.7e-70 269.6 179 72.1
Psat7g017000 Pisum sativum HOM05D004464 ORTHO05D005135 6.6e-70 267.7 183 71.0
MCO12G368 Micromonas commoda HOM05D004464 ORTHO05D005135 4.3e-69 265.0 182 70.3
vmacro18124 Vaccinium macrocarpon HOM05D004464 ORTHO05D005135 4.3e-69 265.0 182 73.6
Cfa007699 Carpinus fangiana HOM05D004464 ORTHO05D005135 1.6e-68 263.1 184 70.7
Ah.10g038200 Amaranthus hybridus HOM05D004464 ORTHO05D005135 2.8e-68 262.3 183 69.4
CiPaw.06G059900 Carya illinoinensis HOM05D004464 ORTHO05D005135 6.2e-68 261.2 184 67.9
CiPaw.15G080600 Carya illinoinensis HOM05D004464 ORTHO05D005135 1.4e-67 260.0 184 67.4
QL09p044371 Quercus lobata HOM05D004464 ORTHO05D005135 2.3e-67 259.2 184 67.4
SMO089G0012 Selaginella moellendorffii HOM05D004464 ORTHO05D005135 3.1e-67 258.8 183 66.7
Pp3c13_7750 Physcomitrium patens HOM05D004464 ORTHO05D005135 1.2e-66 256.9 183 66.1
Nitab4.5_0009887g0020 Nicotiana tabacum HOM05D004464 ORTHO05D005135 2.6e-66 255.8 151 79.5
Oeu033412.2 Olea europaea HOM05D004464 ORTHO05D005135 1.7e-65 253.1 228 59.2
QL02p065152 Quercus lobata HOM05D004464 ORTHO05D005135 8.3e-65 250.8 184 65.2
ECA285G0012 Erigeron canadensis HOM05D004464 ORTHO05D005135 2.4e-64 249.2 185 67.6
DCAR_010215 Daucus carota HOM05D004464 ORTHO05D005135 2.0e-63 246.1 219 59.4
Cre03.g170750 Chlamydomonas reinhardtii HOM05D004464 ORTHO05D005135 7.8e-63 244.2 181 66.3
TAR629G1609 Trochodendron aralioides HOM05D004464 ORTHO05D005135 1.1e-61 240.4 157 73.9
Atru.chr5.3325 Acer truncatum HOM05D004464 ORTHO05D005135 2.5e-61 239.2 183 66.7
Ca_17363_v3 Cicer arietinum L. HOM05D002451 ORTHO05D007901 5.6e-61 238.0 155 71.0
Glyma.16G058000 Glycine max HOM05D004464 ORTHO05D005135 7.3e-61 237.7 151 74.8
SHI12226 Sapria himalayana HOM05D004464 ORTHO05D005135 1.6e-60 236.5 184 60.9
Duzib170G0747 Durio zibethinus HOM05D004464 ORTHO05D005135 2.1e-60 236.1 183 66.7
Thhalv10014794m.g Eutrema salsugineum HOM05D004464 ORTHO05D005135 1.7e-57 226.5 136 77.2
Zm00001eb280020 Zea mays HOM05D004464 ORTHO05D005135 6.4e-57 224.6 181 63.0
Haze_14377 Corylus avellana HOM05D004464 ORTHO05D005135 7.8e-55 217.6 188 62.8
Lsat_1_v5_gn_3_96881 Lactuca sativa HOM05D004464 ORTHO05D005135 7.8e-55 217.6 181 63.5
SEGI_12415 Sequoiadendron giganteum HOM05D004464 ORTHO05D005135 9.5e-53 210.7 138 71.0
HPP92_025702 Vanilla planifolia HOM05D004464 ORTHO05D005135 2.4e-51 206.1 150 68.0
SMO302G0020 Selaginella moellendorffii HOM05D004464 ORTHO05D005135 8.4e-49 197.6 175 57.7
BcaNung00660 Brassica carinata HOM05D004464 ORTHO05D005135 1.3e-46 190.3 158 58.9
AagrBONN_evm.TU.Sc2ySwM_362.1773 Anthoceros agrestis HOM05D004464 ORTHO05D005135 2.3e-46 189.5 151 61.6
Nn3g17540 Nelumbo nucifera HOM05D004464 ORTHO05D005135 1.9e-45 186.4 183 54.1
MELO3C000036.2 Cucumis melo HOM05D004464 ORTHO05D005135 9.6e-45 184.1 149 62.4
Gorai.007G357000 Gossypium raimondii HOM05D004464 ORTHO05D005135 1.6e-44 183.3 179 57.0
Cpa.g.sc14.239 Carica papaya HOM05D004464 ORTHO05D005135 8.1e-44 181.0 102 85.3
Cfa025099 Carpinus fangiana HOM05D002539 ORTHO05D005135 8.1e-44 181.0 186 48.9
Gorai.007G356600 Gossypium raimondii HOM05D004464 ORTHO05D005135 3.8e-41 172.2 100 84.0
Gorai.007G357200 Gossypium raimondii HOM05D004464 ORTHO05D005135 3.2e-40 169.1 99 80.8
Rhsim08G0077600 Rhododendron simsii HOM05D004464 ORTHO05D005135 3.2e-40 169.1 102 78.4
Lju361C7T5 Lonicera japonica HOM05D004464 ORTHO05D005135 4.2e-40 168.7 100 81.0
CBR_g26031 Chara braunii HOM05D004464 ORTHO05D005135 7.1e-40 167.9 146 58.2
BcaNung00661 Brassica carinata HOM05D004464 ORTHO05D005135 4.6e-39 165.2 158 53.8
BolC3t13358H Brassica oleracea HOM05D004464 ORTHO05D005135 2.5e-37 159.5 106 69.8
AagrBONN_evm.TU.Sc2ySwM_344.90 Anthoceros agrestis HOM05D004464 ORTHO05D005135 1.5e-34 150.2 134 57.5
ECA246G0747 Erigeron canadensis HOM05D004464 ORTHO05D005135 2.1e-31 139.8 105 65.7
BolC1t00394H Brassica oleracea HOM05D004464 ORTHO05D005135 8.7e-30 134.4 99 62.6
Oeu003765.1 Olea europaea HOM05D007961 ORTHO05D005135 3.4e-26 122.5 78 78.2
AagrBONN_evm.TU.Sc2ySwM_368.3154 Anthoceros agrestis HOM05D004464 ORTHO05D005135 8.4e-25 117.9 101 60.4
Lju361A7T16 Lonicera japonica HOM05D004464 ORTHO05D005135 8.4e-25 117.9 81 69.1
MELO3C001556.2 Cucumis melo HOM05D004464 ORTHO05D005135 5.5e-24 115.2 81 67.9
SHI40216 Sapria himalayana HOM05D004464 ORTHO05D005135 1.5e-18 97.1 73 60.3
SHI12394 Sapria himalayana HOM05D004464 ORTHO05D005135 4.5e-18 95.5 106 49.1
MELO3C000032.2 Cucumis melo HOM05D004464 ORTHO05D005135 3.2e-16 89.4 52 82.7
Thecc.01G298200 Theobroma cacao HOM05D004464 ORTHO05D005135 2.3e-14 83.2 106 48.1
C09p61360 Brassica napus HOM05D004464 ORTHO05D005135 3.4e-10 69.3 127 37.8
Os04g0662100 Oryza sativa ssp. japonica HOM05D004464 ORTHO05D005135 7.2e-08 61.6 37 70.3
MCO09G009 Micromonas commoda HOM05D001645 ORTHO05D001749 6.1e-07 58.5 140 25.7
SMO268G0058 Selaginella moellendorffii HOM05D001645 ORTHO05D001749 3.9e-06 55.8 144 26.4
Ciclev10013599m.g Citrus clementina HOM05D001645 ORTHO05D001749 5.1e-06 55.5 130 28.5
VMungo1309G2077 Vigna mungo HOM05D001645 ORTHO05D001749 5.1e-06 55.5 161 26.7
Nitab4.5_0004485g0010 Nicotiana tabacum HOM05D001645 ORTHO05D001749 6.7e-06 55.1 144 26.4
FAN13G0214 Fragaria x ananassa HOM05D001645 ORTHO05D001749 8.8e-06 54.7 169 26.0
Nitab4.5_0000703g0010 Nicotiana tabacum HOM05D001645 ORTHO05D001749 8.8e-06 54.7 144 26.4
Nitab4.5_0000703g0020 Nicotiana tabacum HOM05D001645 ORTHO05D001749 8.8e-06 54.7 144 26.4
Nitab4.5_0013997g0010 Nicotiana tabacum HOM05D001645 ORTHO05D001749 8.8e-06 54.7 144 26.4


User provided reference genes

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