Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PSO017G2626 Papaver somniferum HOM05D005383 ORTHO05D006722 1.2e-147 526.9 372 100.0
PSO063G2254 Papaver somniferum HOM05D005383 ORTHO05D006722 2.7e-147 525.8 372 96.8
TAR628G0519 Trochodendron aralioides HOM05D005383 ORTHO05D006722 1.2e-91 340.9 372 72.3
Nn5g27588 Nelumbo nucifera HOM05D005383 ORTHO05D006722 5.8e-89 332.0 369 72.9
GSVIVG01023286001 Vitis vinifera HOM05D005383 ORTHO05D006722 4.9e-80 302.4 368 69.8
TAR381G0956 Trochodendron aralioides HOM05D005383 ORTHO05D006722 8.4e-80 301.6 368 69.6
Ca_00052_v3 Cicer arietinum L. HOM05D005383 ORTHO05D006722 1.4e-79 300.8 368 68.8
CiPaw.05G051100 Carya illinoinensis HOM05D005383 ORTHO05D006722 7.1e-79 298.5 370 69.5
CiPaw.06G143700 Carya illinoinensis HOM05D005383 ORTHO05D006722 2.3e-77 293.5 368 59.8
CSS0013900 Camellia sinensis var. sinensis HOM05D005383 ORTHO05D006722 5.1e-77 292.4 371 69.3
CSS0016011 Camellia sinensis var. sinensis HOM05D005383 ORTHO05D006722 5.1e-77 292.4 371 69.3
CAN.G968.1 Capsicum annuum HOM05D005383 ORTHO05D006722 5.1e-77 292.4 360 70.0
Peaxi162Scf00003g04037 Petunia axillaris HOM05D005383 ORTHO05D006722 1.9e-76 290.4 339 70.2
Solyc03g083310.4 Solanum lycopersicum HOM05D005383 ORTHO05D006722 1.9e-76 290.4 371 65.5
QL02p099934 Quercus lobata HOM05D005383 ORTHO05D006722 2.5e-76 290.0 371 67.4
DCAR_025351 Daucus carota HOM05D005383 ORTHO05D006722 9.6e-76 288.1 343 69.4
CANSAT54G1323 Cannabis sativa HOM05D005383 ORTHO05D006722 1.2e-75 287.7 369 66.7
Sed0026787 Sechium edule HOM05D005383 ORTHO05D006722 4.7e-75 285.8 368 69.0
Haze_01820 Corylus avellana HOM05D005383 ORTHO05D006722 6.2e-75 285.4 398 54.5
Nitab4.5_0000548g0200 Nicotiana tabacum HOM05D005383 ORTHO05D006722 6.2e-75 285.4 360 68.3
CDE08G1140 Ceratophyllum demersum HOM05D005383 ORTHO05D006722 1.1e-74 284.6 369 67.5
Hma1.2p1_1108F.1_g257860 Hydrangea macrophylla HOM05D005383 ORTHO05D006722 1.1e-74 284.6 371 68.5
Lalb_Chr07g0185851 Lupinus albus HOM05D005383 ORTHO05D006722 5.2e-74 282.3 372 69.4
Nitab4.5_0009812g0010 Nicotiana tabacum HOM05D005383 ORTHO05D006722 6.9e-74 282.0 369 67.2
Glyma.08G126300 Glycine max HOM05D005383 ORTHO05D006722 9.0e-74 281.6 366 68.6
PGSC0003DMG400009082 Solanum tuberosum HOM05D005383 ORTHO05D006722 1.2e-73 281.2 374 66.3
RcHm_v2.0_Chr7g0220861 Rosa chinensis HOM05D005383 ORTHO05D006722 3.4e-73 279.6 370 68.1
CDE02G2650 Ceratophyllum demersum HOM05D005383 ORTHO05D006722 7.6e-73 278.5 369 66.7
Psat1g221920 Pisum sativum HOM05D005383 ORTHO05D006722 9.9e-73 278.1 369 66.1
Rhsim11G0125900 Rhododendron simsii HOM05D005383 ORTHO05D006722 1.7e-72 277.3 370 68.1
TPR.G2110 Trifolium pratense HOM05D005383 ORTHO05D006722 2.9e-72 276.6 372 66.1
MD08G1239600 Malus domestica HOM05D005383 ORTHO05D006722 6.4e-72 275.4 371 66.0
Atru.chr6.733 Acer truncatum HOM05D005383 ORTHO05D006722 8.4e-72 275.0 366 66.4
EL10Ac2g02705 Beta vulgaris HOM05D005383 ORTHO05D006722 1.1e-71 274.6 359 68.8
Ciclev10001534m.g Citrus clementina HOM05D005383 ORTHO05D006722 1.4e-71 274.2 365 66.3
Manes.10G120600 Manihot esculenta HOM05D005383 ORTHO05D006722 1.4e-71 274.2 360 67.8
FvH4_5g28700 Fragaria vesca HOM05D005383 ORTHO05D006722 1.9e-71 273.9 367 66.8
COL.COLO4_17761 Corchorus olitorius HOM05D005383 ORTHO05D006722 4.2e-71 272.7 368 50.5
FAN08G2879 Fragaria x ananassa HOM05D005383 ORTHO05D006722 4.2e-71 272.7 367 66.2
Cpa.g.sc161.1 Carica papaya HOM05D005383 ORTHO05D006722 5.4e-71 272.3 365 65.8
Sopen03g023060 Solanum pennellii HOM05D005383 ORTHO05D006722 7.1e-71 271.9 370 65.7
Prupe.1G576100 Prunus persica HOM05D005383 ORTHO05D006722 9.3e-71 271.6 370 57.0
Cc02_g22940 Coffea canephora HOM05D005383 ORTHO05D006722 1.2e-70 271.2 366 66.9
Potri.003G010400 Populus trichocarpa HOM05D005383 ORTHO05D006722 1.6e-70 270.8 357 65.8
Duzib248G0552 Durio zibethinus HOM05D005383 ORTHO05D006722 2.1e-70 270.4 368 50.0
Gohir.A01G182000 Gossypium hirsutum HOM05D005383 ORTHO05D006722 2.1e-70 270.4 372 65.6
Potri.004G221700 Populus trichocarpa HOM05D005383 ORTHO05D006722 2.1e-70 270.4 359 67.4
FAN13G0305 Fragaria x ananassa HOM05D005383 ORTHO05D006722 2.7e-70 270.0 390 63.6
Dinv01847 Davidia involucrata HOM05D005383 ORTHO05D006722 3.5e-70 269.6 357 67.5
arahy.Tifrunner.gnm1.ann1.UJ0XJV Arachis hypogaea HOM05D005383 ORTHO05D006722 4.6e-70 269.2 367 65.1
Gohir.D01G173100 Gossypium hirsutum HOM05D005383 ORTHO05D006722 4.6e-70 269.2 372 65.1
MELO3C011837.2 Cucumis melo HOM05D005383 ORTHO05D006722 6.0e-70 268.9 359 68.5
CsaV3_5G029920 Cucumis sativus L. HOM05D005383 ORTHO05D006722 6.0e-70 268.9 359 68.0
VMungo0251G3735 Vigna mungo HOM05D005383 ORTHO05D006722 6.0e-70 268.9 366 66.7
Thecc.02G025800 Theobroma cacao HOM05D005383 ORTHO05D006722 1.7e-69 267.3 368 65.8
Phvul.002G248200 Phaseolus vulgaris HOM05D005383 ORTHO05D006722 3.9e-69 266.2 366 66.7
Gorai.002G214700 Gossypium raimondii HOM05D005383 ORTHO05D006722 5.1e-69 265.8 372 64.5
Glyma.05G167900 Glycine max HOM05D005383 ORTHO05D006722 8.7e-69 265.0 365 66.8
Ciclev10003783m.g Citrus clementina HOM05D005383 ORTHO05D006722 4.3e-68 262.7 365 65.5
Eucgr.G00356 Eucalyptus grandis HOM05D005383 ORTHO05D006722 5.6e-68 262.3 368 63.6
TWI23G0375 Tripterygium wilfordii HOM05D005383 ORTHO05D006722 1.3e-67 261.2 368 64.7
Lj4g0022432 Lotus japonicus HOM05D005383 ORTHO05D006722 1.6e-67 260.8 367 66.2
Lj9A301T38 Lonicera japonica HOM05D005383 ORTHO05D006722 2.1e-67 260.4 343 71.4
Aqoxy6G00141 Aquilegia oxysepala HOM05D005383 ORTHO05D006722 5.3e-66 255.8 337 68.5
MSTRG.5117 Avicennia marina HOM05D005383 ORTHO05D006722 9.0e-66 255.0 366 64.5
THA.LOC104801420 Tarenaya hassleriana HOM05D005383 ORTHO05D006722 1.5e-65 254.2 373 63.0
Lalb_Chr13g0295611 Lupinus albus HOM05D005383 ORTHO05D006722 4.5e-65 252.7 371 65.5
PGR042G1418 Punica granatum HOM05D005383 ORTHO05D006722 5.8e-65 252.3 379 61.7
Migut.B00804 Erythranthe guttata HOM05D005383 ORTHO05D006722 1.3e-64 251.1 353 65.7
Hund12945 Selenicereus undatus HOM05D005383 ORTHO05D006722 1.7e-64 250.8 369 53.9
vmacro01730 Vaccinium macrocarpon HOM05D005383 ORTHO05D006722 4.9e-64 249.2 367 65.1
arahy.Tifrunner.gnm1.ann1.E4SRBI Arachis hypogaea HOM05D005383 ORTHO05D006722 1.6e-62 244.2 364 62.9
Sed0022153 Sechium edule HOM05D005383 ORTHO05D006722 1.0e-61 241.5 367 64.9
HanXRQChr08g0209021 Helianthus annuus HOM05D005383 ORTHO05D006722 2.3e-61 240.4 327 68.5
TWI59G0781 Tripterygium wilfordii HOM05D005383 ORTHO05D006722 2.3e-61 240.4 371 63.3
arahy.Tifrunner.gnm1.ann1.I6AGPX Arachis hypogaea HOM05D005383 ORTHO05D006722 3.0e-61 240.0 338 66.6
BcaC04g20728 Brassica carinata HOM05D005383 ORTHO05D006722 6.7e-61 238.8 372 61.8
BolC9t56882H Brassica oleracea HOM05D005383 ORTHO05D006722 6.7e-61 238.8 372 61.8
AL6G41240 Arabidopsis lyrata HOM05D005383 ORTHO05D006722 8.7e-61 238.4 366 62.0
BraSC35t46002Z Brassica rapa HOM05D005383 ORTHO05D006722 8.7e-61 238.4 372 62.1
Lsat_1_v5_gn_4_6600 Lactuca sativa HOM05D005383 ORTHO05D006722 1.5e-60 237.7 370 64.3
A10p07980 Brassica napus HOM05D005383 ORTHO05D006722 1.9e-60 237.3 363 62.8
Sabra03G0005300 Salix brachista HOM05D005383 ORTHO05D006722 2.8e-59 233.4 484 35.7
BcaB08g35467 Brassica carinata HOM05D005383 ORTHO05D006722 3.7e-59 233.0 373 61.4
AT4G06634 Arabidopsis thaliana HOM05D005383 ORTHO05D006722 4.8e-59 232.6 367 61.9
Carub.0006s2631 Capsella rubella HOM05D005383 ORTHO05D006722 8.1e-59 231.9 371 62.3
Thhalv10028723m.g Eutrema salsugineum HOM05D005383 ORTHO05D006722 1.1e-58 231.5 364 61.3
Sp6g13330 Schrenkiella parvula HOM05D005383 ORTHO05D006722 2.4e-58 230.3 357 62.2
SGA_v2.0_scaffold42G15921 Striga asiatica HOM05D005383 ORTHO05D006722 3.1e-58 229.9 379 59.9
CARHR260070 Cardamine hirsuta HOM05D005383 ORTHO05D006722 5.3e-58 229.2 379 61.2
HPP92_009272 Vanilla planifolia HOM05D005383 ORTHO05D006722 5.8e-57 225.7 365 61.4
HanXRQChr04g0103661 Helianthus annuus HOM05D005383 ORTHO05D006722 9.9e-57 224.9 373 61.1
C03p19190 Brassica napus HOM05D005383 ORTHO05D006722 1.3e-56 224.6 362 58.8
ECA233G1887 Erigeron canadensis HOM05D005383 ORTHO05D006722 2.2e-56 223.8 374 61.5
Actinidia00189 Actinidia chinensis HOM05D005383 ORTHO05D006722 3.8e-56 223.0 276 71.4
C09p39820 Brassica napus HOM05D005383 ORTHO05D006722 4.9e-56 222.6 371 60.9
ATR0071G030 Amborella trichopoda HOM05D005383 ORTHO05D006722 6.4e-56 222.2 324 67.9
Aa31LG3G14030 Aethionema arabicum HOM05D005383 ORTHO05D006722 8.4e-56 221.9 386 58.5
A03p16300 Brassica napus HOM05D005383 ORTHO05D006722 6.7e-53 212.2 364 58.0
Lsat_1_v5_gn_8_160061 Lactuca sativa HOM05D005383 ORTHO05D006722 6.7e-53 212.2 266 68.0
unitig_699.g19853 Utricularia gibba HOM05D005383 ORTHO05D006722 8.7e-53 211.8 370 39.2
BraA03t10921Z Brassica rapa HOM05D005383 ORTHO05D006722 1.5e-52 211.1 375 47.5
BolC3t14307H Brassica oleracea HOM05D005383 ORTHO05D006722 1.9e-52 210.7 376 47.1
BcaC01g06099 Brassica carinata HOM05D005383 ORTHO05D006722 1.1e-50 204.9 360 57.8
Ciclev10003892m.g Citrus clementina HOM05D005383 ORTHO05D006722 1.2e-49 201.4 327 53.8
HPP92_013744 Vanilla planifolia HOM05D006763 ORTHO05D008659 1.2e-49 201.4 311 65.0
Sc07g0004970 Simmondsia chinensis HOM05D005383 ORTHO05D006722 2.6e-49 200.3 327 68.5
MSTRG.16504 Avicennia marina HOM05D005383 ORTHO05D006722 2.3e-45 187.2 305 66.9
BcaC01g06075 Brassica carinata HOM05D005383 ORTHO05D006722 3.0e-45 186.8 363 55.1
Oeu036675.1 Olea europaea HOM05D005383 ORTHO05D006722 5.7e-44 182.6 319 62.1
Actinidia39015 Actinidia chinensis HOM05D005383 ORTHO05D006722 3.8e-40 169.9 127 77.2
Os05g0106000 Oryza sativa ssp. japonica HOM05D005383 ORTHO05D006722 3.8e-40 169.9 372 53.5
unitig_747.g21262 Utricularia gibba HOM05D005383 ORTHO05D006722 3.2e-39 166.8 365 57.3
Zm00001eb181970 Zea mays HOM05D005383 ORTHO05D006722 2.1e-38 164.1 328 56.7
Zm00001eb267130 Zea mays HOM05D005383 ORTHO05D006722 2.1e-38 164.1 365 53.7
FAN04G2588 Fragaria x ananassa HOM05D005383 ORTHO05D006722 2.7e-38 163.7 127 75.6
Os02g0551900 Oryza sativa ssp. japonica HOM05D005383 ORTHO05D006722 7.9e-38 162.2 364 54.1
Zm00001eb243510 Zea mays HOM05D005383 ORTHO05D006722 7.9e-38 162.2 331 55.6
MD15G1431100 Malus domestica HOM05D005383 ORTHO05D006722 8.7e-37 158.7 285 61.1
ClCG11G013400 Citrullus lanatus HOM05D005383 ORTHO05D006722 1.5e-36 157.9 127 73.2
AUR62041111 Chenopodium quinoa HOM05D005383 ORTHO05D006722 6.3e-35 152.5 187 54.0
Peaxi162Scf03254g00012 Petunia axillaris HOM05D005383 ORTHO05D006722 5.9e-33 146.0 170 50.6
Mapoly0095s0037 Marchantia polymorpha HOM05D005383 ORTHO05D006722 2.9e-32 143.7 336 55.7
Sabra01G0167800 Salix brachista HOM05D005383 ORTHO05D006722 3.2e-31 140.2 172 52.9
CBR_g52462 Chara braunii HOM05D005383 ORTHO05D006722 5.7e-28 129.4 245 64.5
CAN.G982.21 Capsicum annuum HOM05D005383 ORTHO05D006722 3.7e-27 126.7 179 46.4
SEGI_13518 Sequoiadendron giganteum HOM05D005383 ORTHO05D006722 6.3e-27 125.9 115 68.7
AagrBONN_evm.TU.Sc2ySwM_228.1706 Anthoceros agrestis HOM05D005383 ORTHO05D006722 6.9e-26 122.5 240 64.2
Pp3c7_7980 Physcomitrium patens HOM05D005383 ORTHO05D006722 3.4e-25 120.2 411 48.4
FAN18G2475 Fragaria x ananassa HOM05D005383 ORTHO05D006722 6.5e-24 115.9 128 60.2
ATR0071G005 Amborella trichopoda HOM05D005383 ORTHO05D006722 3.0e-21 107.1 105 56.2
SMO347G0081 Selaginella moellendorffii HOM05D005383 ORTHO05D006722 1.4e-18 98.2 226 54.4
Peaxi162Scf00003g03953 Petunia axillaris HOM05D000011 ORTHO05D011267 1.0e-16 92.0 157 40.1
arahy.Tifrunner.gnm1.ann1.VA1YNF Arachis hypogaea HOM05D005383 ORTHO05D006722 1.8e-13 81.3 84 71.4
arahy.Tifrunner.gnm1.ann1.L3LYUI Arachis hypogaea HOM05D005383 ORTHO05D031493 2.6e-12 77.4 58 63.8
arahy.Tifrunner.gnm1.ann1.0L29ML Arachis hypogaea HOM05D005383 ORTHO05D006722 3.3e-12 77.0 56 66.1
arahy.Tifrunner.gnm1.ann1.XX0GIY Arachis hypogaea HOM05D005383 ORTHO05D006722 1.7e-11 74.7 56 64.3


User provided reference genes

Program Settings