Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PRCOL_00006719 Prasinoderma coloniale HOM05D004035 ORTHO05D004631 0.0e+00 1808.5 952 100.0
Mapoly0160s0027 Marchantia polymorpha HOM05D004035 ORTHO05D004631 3.9e-65 254.2 1066 27.3
Ah.02g125200 Amaranthus hybridus HOM05D004035 ORTHO05D004631 1.1e-56 226.1 1046 26.3
Manes.02G093700 Manihot esculenta HOM05D004035 ORTHO05D004631 1.4e-54 219.2 1047 25.5
Rhsim02G0182400 Rhododendron simsii HOM05D004035 ORTHO05D004631 5.3e-54 217.2 1047 25.6
Gohir.D11G190900 Gossypium hirsutum HOM05D004035 ORTHO05D004631 2.0e-53 215.3 1046 25.1
Gorai.003G015100 Gossypium raimondii HOM05D004035 ORTHO05D004631 2.0e-53 215.3 1041 25.4
Psat4g092560 Pisum sativum HOM05D004035 ORTHO05D004631 2.6e-53 214.9 1041 25.1
Pp3c10_5300 Physcomitrium patens HOM05D004035 ORTHO05D004631 3.4e-53 214.5 1066 25.2
Gorai.007G203400 Gossypium raimondii HOM05D004035 ORTHO05D004631 1.7e-52 212.2 1041 25.2
MELO3C017565.2 Cucumis melo HOM05D004035 ORTHO05D004631 2.9e-52 211.5 1037 25.5
Thecc.01G133800 Theobroma cacao HOM05D004035 ORTHO05D004631 8.5e-52 209.9 1039 24.9
TAR362G0832 Trochodendron aralioides HOM05D004035 ORTHO05D004631 1.1e-51 209.5 1050 25.7
ClCG07G009230 Citrullus lanatus HOM05D004035 ORTHO05D004631 1.4e-51 209.1 1038 25.5
Duzib147G1708 Durio zibethinus HOM05D004035 ORTHO05D004631 1.4e-51 209.1 1043 25.1
Gohir.A11G184400 Gossypium hirsutum HOM05D004035 ORTHO05D004631 2.5e-51 208.4 1046 25.0
PSO675G4195 Papaver somniferum HOM05D004035 ORTHO05D004631 2.5e-51 208.4 1047 25.8
VMungo1215G2866 Vigna mungo HOM05D004035 ORTHO05D004631 5.5e-51 207.2 1038 25.9
Actinidia36560 Actinidia chinensis HOM05D004035 ORTHO05D004631 9.4e-51 206.5 1043 25.0
CAN.G1003.4 Capsicum annuum HOM05D004035 ORTHO05D004631 2.7e-50 204.9 1039 24.5
Psat2g159680 Pisum sativum HOM05D004035 ORTHO05D004631 2.7e-50 204.9 1036 25.5
Potri.007G025700 Populus trichocarpa HOM05D004035 ORTHO05D004631 3.6e-50 204.5 1040 25.3
CANSAT01G0227 Cannabis sativa HOM05D004035 ORTHO05D004631 4.6e-50 204.1 1046 25.2
Cc03_g03620 Coffea canephora HOM05D004035 ORTHO05D004631 6.1e-50 203.8 1046 25.0
PSO541G3635 Papaver somniferum HOM05D004035 ORTHO05D004631 6.1e-50 203.8 1047 25.7
Gohir.D03G014800 Gossypium hirsutum HOM05D004035 ORTHO05D004631 7.9e-50 203.4 1031 25.2
HanXRQChr16g0530441 Helianthus annuus HOM05D004035 ORTHO05D004631 7.9e-50 203.4 1048 25.1
QL06p046086 Quercus lobata HOM05D004035 ORTHO05D004631 7.9e-50 203.4 1050 25.3
EL10Ac6g15563 Beta vulgaris HOM05D004035 ORTHO05D004631 1.0e-49 203.0 1045 25.6
COL.COLO4_22081 Corchorus olitorius HOM05D004035 ORTHO05D004631 3.0e-49 201.4 1040 24.6
Sed0003321 Sechium edule HOM05D004035 ORTHO05D004631 3.9e-49 201.1 1042 25.1
FvH4_1g13311 Fragaria vesca HOM05D004035 ORTHO05D004631 6.7e-49 200.3 1046 25.0
Prupe.7G154500 Prunus persica HOM05D004035 ORTHO05D004631 6.7e-49 200.3 1045 25.1
Atru.chr3.574 Acer truncatum HOM05D004035 ORTHO05D004631 8.8e-49 199.9 1050 24.7
MD15G1261900 Malus domestica HOM05D004035 ORTHO05D004631 1.1e-48 199.5 1040 25.1
Nitab4.5_0000178g0040 Nicotiana tabacum HOM05D004035 ORTHO05D004631 1.1e-48 199.5 1042 24.7
ECA246G3379 Erigeron canadensis HOM05D004035 ORTHO05D004631 1.5e-48 199.1 1052 24.7
MD02G1147600 Malus domestica HOM05D004035 ORTHO05D004631 1.5e-48 199.1 1042 24.8
Phvul.002G030300 Phaseolus vulgaris HOM05D004035 ORTHO05D004631 2.0e-48 198.7 1038 25.1
Potri.005G123000 Populus trichocarpa HOM05D004035 ORTHO05D004631 4.3e-48 197.6 1047 24.7
Sabra07G0022700 Salix brachista HOM05D004035 ORTHO05D004631 4.3e-48 197.6 1050 25.0
Sopen07g030000 Solanum pennellii HOM05D004035 ORTHO05D004631 7.4e-48 196.8 1042 24.6
TPR.G34978 Trifolium pratense HOM05D004035 ORTHO05D004631 1.3e-47 196.1 1034 24.7
CSS0025574 Camellia sinensis var. sinensis HOM05D004035 ORTHO05D004631 1.7e-47 195.7 1048 24.8
Os03g0715500 Oryza sativa ssp. japonica HOM05D004035 ORTHO05D004631 1.7e-47 195.7 1035 26.1
Solyc07g056660.4 Solanum lycopersicum HOM05D004035 ORTHO05D004631 1.7e-47 195.7 1042 24.6
TPR.G22289 Trifolium pratense HOM05D004035 ORTHO05D004631 2.2e-47 195.3 1032 24.4
TWI73G0243 Tripterygium wilfordii HOM05D004035 ORTHO05D004631 2.2e-47 195.3 1047 25.0
GSVIVG01018960001 Vitis vinifera HOM05D004035 ORTHO05D004631 2.8e-47 194.9 978 25.4
Aqoxy6G01113 Aquilegia oxysepala HOM05D004035 ORTHO05D004631 3.7e-47 194.5 1054 25.9
PGR102G3072 Punica granatum HOM05D004035 ORTHO05D004631 3.7e-47 194.5 1046 25.3
Solyc02g085220.4 Solanum lycopersicum HOM05D004035 ORTHO05D004631 4.8e-47 194.1 1043 24.5
Sopen02g029920 Solanum pennellii HOM05D004035 ORTHO05D004631 4.8e-47 194.1 1043 24.7
FAN28G2497 Fragaria x ananassa HOM05D004035 ORTHO05D004631 6.3e-47 193.7 1055 24.8
Lj2C453G20 Lonicera japonica HOM05D004035 ORTHO05D004631 6.3e-47 193.7 1045 24.1
Nn7g37554 Nelumbo nucifera HOM05D004035 ORTHO05D004631 6.3e-47 193.7 1047 24.3
RcHm_v2.0_Chr2g0101581 Rosa chinensis HOM05D004035 ORTHO05D004631 8.2e-47 193.4 1050 24.8
A03p64370 Brassica napus HOM05D004035 ORTHO05D004631 1.1e-46 193.0 1043 24.4
C07p61810 Brassica napus HOM05D004035 ORTHO05D004631 1.1e-46 193.0 1043 24.6
HanXRQChr09g0261471 Helianthus annuus HOM05D004035 ORTHO05D004631 1.1e-46 193.0 1015 25.1
FAN19G0080 Fragaria x ananassa HOM05D004035 ORTHO05D004631 1.4e-46 192.6 1044 24.6
Migut.H00988 Erythranthe guttata HOM05D004035 ORTHO05D004631 2.4e-46 191.8 1044 23.6
BraA03t15502Z Brassica rapa HOM05D004035 ORTHO05D004631 4.1e-46 191.0 1043 24.4
Medtr8g077680 Medicago truncatula HOM05D004035 ORTHO05D004631 4.1e-46 191.0 1037 24.5
BolC7t46602H Brassica oleracea HOM05D004035 ORTHO05D004631 5.3e-46 190.7 1043 24.5
Ciclev10024797m.g Citrus clementina HOM05D004035 ORTHO05D004631 9.1e-46 189.9 1043 24.1
Zm00001eb055180 Zea mays HOM05D004035 ORTHO05D004631 1.2e-45 189.5 1043 25.6
Lsat_1_v5_gn_3_76401 Lactuca sativa HOM05D004035 ORTHO05D004631 1.5e-45 189.1 1040 23.8
Ca_22279_v3 Cicer arietinum L. HOM05D004035 ORTHO05D004631 2.0e-45 188.7 1046 24.7
AT4G36630 Arabidopsis thaliana HOM05D004035 ORTHO05D004631 5.9e-45 187.2 1046 24.3
CARHR244970 Cardamine hirsuta HOM05D004035 ORTHO05D004631 1.0e-44 186.4 1047 24.3
Carub.0007s0370 Capsella rubella HOM05D004035 ORTHO05D004631 1.7e-44 185.7 1045 24.2
AL7G14420 Arabidopsis lyrata HOM05D004035 ORTHO05D004631 2.2e-44 185.3 1046 24.4
Eucgr.H01269 Eucalyptus grandis HOM05D004035 ORTHO05D004631 2.2e-44 185.3 1056 24.1
Nn1g04984 Nelumbo nucifera HOM05D004035 ORTHO05D004631 2.2e-44 185.3 1050 24.7
LjContig00448g0016984 Lotus japonicus HOM05D004035 ORTHO05D004631 5.0e-44 184.1 1039 24.1
Thhalv10024305m.g Eutrema salsugineum HOM05D004035 ORTHO05D004631 6.5e-44 183.7 1047 24.2
Medtr5g020140 Medicago truncatula HOM05D004035 ORTHO05D004631 1.1e-43 183.0 986 24.5
arahy.Tifrunner.gnm1.ann1.JC6DGE Arachis hypogaea HOM05D004035 ORTHO05D004631 1.9e-43 182.2 1039 24.2
ATR0743G236 Amborella trichopoda HOM05D004035 ORTHO05D004631 2.5e-43 181.8 1053 24.3
arahy.Tifrunner.gnm1.ann1.ZDS5RA Arachis hypogaea HOM05D004035 ORTHO05D004631 3.2e-43 181.4 1039 24.4
Sp7g34290 Schrenkiella parvula HOM05D004035 ORTHO05D004631 5.5e-43 180.6 1047 24.4
DCAR_025943 Daucus carota HOM05D004035 ORTHO05D004631 9.4e-43 179.9 1055 23.9
ECA232G2840 Erigeron canadensis HOM05D004035 ORTHO05D004631 1.2e-42 179.5 1045 24.2
FAN26G1872 Fragaria x ananassa HOM05D004035 ORTHO05D004631 1.2e-42 179.5 1072 24.1
SMO145G0075 Selaginella moellendorffii HOM05D004035 ORTHO05D004631 1.2e-42 179.5 1018 24.5
SGA_v2.0_scaffold276G46626 Striga asiatica HOM05D004035 ORTHO05D004631 1.2e-42 179.5 1068 23.3
Aa31LG6G13430 Aethionema arabicum HOM05D004035 ORTHO05D004631 2.1e-42 178.7 1042 23.2
TAR376G0366 Trochodendron aralioides HOM05D004035 ORTHO05D004631 2.1e-42 178.7 856 26.5
Lj1g0016074 Lotus japonicus HOM05D004035 ORTHO05D004631 4.7e-42 177.6 1042 24.1
Actinidia12124 Actinidia chinensis HOM05D004035 ORTHO05D004631 2.3e-41 175.3 853 25.4
Gohir.A02G165200 Gossypium hirsutum HOM05D004035 ORTHO05D004631 3.0e-41 174.9 810 25.1
Glyma.11G068300 Glycine max HOM05D004035 ORTHO05D004631 1.7e-39 169.1 844 25.6
CiPaw.01G038000 Carya illinoinensis HOM05D004035 ORTHO05D004631 2.8e-39 168.3 1046 23.5
AUR62007565 Chenopodium quinoa HOM05D004035 ORTHO05D004631 2.8e-39 168.3 858 25.3
AUR62004050 Chenopodium quinoa HOM05D004035 ORTHO05D004631 3.7e-39 167.9 858 25.4
Ca_24847_v3 Cicer arietinum L. HOM05D004035 ORTHO05D004631 3.7e-39 167.9 848 26.2
Peaxi162Scf00366g00121 Petunia axillaris HOM05D004035 ORTHO05D004631 1.4e-38 166.0 1043 23.6
Glyma.01G176000 Glycine max HOM05D004035 ORTHO05D004631 4.1e-38 164.5 845 25.8
Lalb_Chr16g0388281 Lupinus albus HOM05D004035 ORTHO05D004631 5.3e-38 164.1 886 24.8
Lj2g0023524 Lotus japonicus HOM05D004035 ORTHO05D004631 7.0e-38 163.7 855 25.6
Hma1.2p1_0400F.1_g144430 Hydrangea macrophylla HOM05D004035 ORTHO05D004631 9.1e-38 163.3 853 25.1
Lalb_Chr09g0322391 Lupinus albus HOM05D004035 ORTHO05D004631 4.5e-37 161.0 843 25.3
Sc03g0002970 Simmondsia chinensis HOM05D004035 ORTHO05D004631 4.5e-37 161.0 852 24.6
Nitab4.5_0001385g0050 Nicotiana tabacum HOM05D004035 ORTHO05D004631 5.9e-37 160.6 1041 23.2
Dinv39986 Davidia involucrata HOM05D004035 ORTHO05D004631 1.3e-36 159.5 1047 23.6
PSO837G0008 Papaver somniferum HOM05D004035 ORTHO05D004631 6.5e-36 157.1 852 24.3
PSO017G4184 Papaver somniferum HOM05D004035 ORTHO05D004631 1.9e-35 155.6 855 23.7
CDE09G0689 Ceratophyllum demersum HOM05D004035 ORTHO05D004631 3.2e-35 154.8 856 24.8
Ca_22265_v3 Cicer arietinum L. HOM05D004035 ORTHO05D004631 3.2e-35 154.8 1036 23.2
arahy.Tifrunner.gnm1.ann1.6E6Z42 Arachis hypogaea HOM05D004035 ORTHO05D004631 2.7e-34 151.8 849 24.9
arahy.Tifrunner.gnm1.ann1.GM6JEQ Arachis hypogaea HOM05D004035 ORTHO05D004631 4.7e-34 151.0 849 24.9
Cfa004306 Carpinus fangiana HOM05D004035 ORTHO05D004631 4.7e-34 151.0 1049 23.6
Lsat_1_v5_gn_4_152080 Lactuca sativa HOM05D004035 ORTHO05D004631 1.0e-33 149.8 1036 22.7
SalBow8G0583 Salvia bowleyana HOM05D004035 ORTHO05D004631 5.2e-33 147.5 1056 22.8
AagrBONN_evm.TU.Sc2ySwM_340.480 Anthoceros agrestis HOM05D004035 ORTHO05D004631 2.6e-32 145.2 532 28.4
DCAR_017291 Daucus carota HOM05D004035 ORTHO05D004631 3.3e-32 144.8 1036 22.5
vmacro11086 Vaccinium macrocarpon HOM05D004035 ORTHO05D004631 7.5e-32 143.7 1128 23.0
A08p22280 Brassica napus HOM05D004035 ORTHO05D004631 1.7e-28 132.5 662 25.4
CsaV3_UNG172360 Cucumis sativus L. HOM05D004035 ORTHO05D004631 8.5e-28 130.2 796 25.4
Haze_15090 Corylus avellana HOM05D004035 ORTHO05D004631 1.9e-27 129.0 1022 23.0
MBI07_g11484_MAGBIO Magnolia biondii HOM05D004035 ORTHO05D004631 8.0e-26 123.6 750 25.5
CBR_g34968 Chara braunii HOM05D004035 ORTHO05D004631 3.4e-24 118.2 802 23.8
BcaB03g12382 Brassica carinata HOM05D004035 ORTHO05D004631 9.1e-22 110.2 403 26.1
RcHm_v2.0_Chr2g0101101 Rosa chinensis HOM05D004035 ORTHO05D004631 9.1e-22 110.2 402 26.1
Oeu042265.1 Olea europaea HOM05D004035 ORTHO05D004631 2.0e-21 109.0 438 25.3
unitig_52.g17587 Utricularia gibba HOM05D004035 ORTHO05D004631 2.0e-21 109.0 515 24.1
CsaV3_4G005000 Cucumis sativus L. HOM05D004035 ORTHO05D004631 3.5e-21 108.2 288 28.8
PRCOL_00002861 Prasinoderma coloniale HOM05D005380 ORTHO05D006601 5.9e-21 107.5 942 26.0
PGSC0003DMG400003507 Solanum tuberosum HOM05D004035 ORTHO05D004631 6.5e-20 104.0 508 24.4
BcaC01g00456 Brassica carinata HOM05D004035 ORTHO05D004631 9.5e-19 100.1 881 22.7
Cfa025411 Carpinus fangiana HOM05D004035 ORTHO05D004631 9.5e-19 100.1 432 24.8
Thecc.01G036000 Theobroma cacao HOM05D004035 ORTHO05D004631 1.0e-17 96.7 431 26.2
Hund16431 Selenicereus undatus HOM05D004035 ORTHO05D004631 3.0e-17 95.1 339 25.7
Cre06.g278124 Chlamydomonas reinhardtii HOM05D004035 ORTHO05D004631 5.7e-16 90.9 243 33.3
Oeu042264.1 Olea europaea HOM05D004035 ORTHO05D004631 1.3e-15 89.7 524 24.4
MBI07_g05961_MAGBIO Magnolia biondii HOM05D000455 ORTHO05D000434 8.3e-15 87.0 219 28.3
Cpa.g.sc202.3 Carica papaya HOM05D004035 ORTHO05D004631 1.8e-14 85.9 223 28.7
BolC3t20256H Brassica oleracea HOM05D004035 ORTHO05D004631 2.4e-14 85.5 277 28.9
Cpa.g.sc1294.1 Carica papaya HOM05D004035 ORTHO05D004631 3.5e-13 81.6 359 26.5
C03p80030 Brassica napus HOM05D004035 ORTHO05D004631 3.8e-12 78.2 689 22.6
SEGI_00418 Sequoiadendron giganteum HOM05D004035 ORTHO05D004631 4.3e-11 74.7 226 25.2
Thecc.01G035900 Theobroma cacao HOM05D004035 ORTHO05D004631 5.2e-09 67.8 402 24.9
Mapoly0029s0138 Marchantia polymorpha HOM05D005380 ORTHO05D006601 8.9e-09 67.0 878 22.0
SEGI_13313 Sequoiadendron giganteum HOM05D004035 ORTHO05D004631 1.2e-08 66.6 137 34.3
Cpa.g.sc1294.3 Carica papaya HOM05D004035 ORTHO05D004631 2.6e-08 65.5 416 23.3


User provided reference genes

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