Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PRCOL_00006095 Prasinoderma coloniale HOM05D003321 ORTHO05D005161 6.8e-285 983.4 532 100.0
Mapoly0030s0009 Marchantia polymorpha HOM05D003321 ORTHO05D005161 1.1e-109 401.4 455 46.2
SEGI_13423 Sequoiadendron giganteum HOM05D003321 ORTHO05D005161 2.6e-106 390.2 455 44.4
Lsat_1_v5_gn_4_46121 Lactuca sativa HOM05D003321 ORTHO05D005161 4.8e-105 386.0 439 45.3
SEGI_27754 Sequoiadendron giganteum HOM05D003321 ORTHO05D005161 1.8e-104 384.0 451 43.9
ATR1120G139 Amborella trichopoda HOM05D003321 ORTHO05D005161 7.0e-104 382.1 454 44.9
SMO356G0125 Selaginella moellendorffii HOM05D003321 ORTHO05D005161 9.1e-104 381.7 438 45.4
AagrBONN_evm.TU.Sc2ySwM_362.1417 Anthoceros agrestis HOM05D003321 ORTHO05D005161 1.2e-103 381.3 455 43.1
Pp3c9_4400 Physcomitrium patens HOM05D003321 ORTHO05D005161 2.0e-103 380.6 455 42.9
Os05g0182600 Oryza sativa ssp. japonica HOM05D003321 ORTHO05D005161 2.6e-103 380.2 454 44.5
Nn4g23059 Nelumbo nucifera HOM05D003321 ORTHO05D005161 4.5e-103 379.4 461 43.6
ECA234G3709 Erigeron canadensis HOM05D003321 ORTHO05D005161 5.9e-103 379.0 453 45.0
Gorai.007G078500 Gossypium raimondii HOM05D003321 ORTHO05D005161 1.7e-102 377.5 442 44.3
arahy.Tifrunner.gnm1.ann1.QM6JB0 Arachis hypogaea HOM05D003321 ORTHO05D005161 2.2e-102 377.1 453 43.9
Lj7A400T32 Lonicera japonica HOM05D003321 ORTHO05D005161 2.2e-102 377.1 440 43.9
Lalb_Chr02g0159551 Lupinus albus HOM05D003321 ORTHO05D005161 2.2e-102 377.1 449 43.7
GSVIVG01011349001 Vitis vinifera HOM05D003321 ORTHO05D005161 2.2e-102 377.1 453 43.7
Glyma.01G136100 Glycine max HOM05D003321 ORTHO05D005161 3.8e-102 376.3 434 43.8
Medtr1g022345 Medicago truncatula HOM05D003321 ORTHO05D005161 3.8e-102 376.3 434 44.2
Ca_05956_v3 Cicer arietinum L. HOM05D003321 ORTHO05D005161 5.0e-102 375.9 436 43.8
HanXRQChr16g0519581 Helianthus annuus HOM05D003321 ORTHO05D005161 5.0e-102 375.9 453 43.7
TWI34G1126 Tripterygium wilfordii HOM05D003321 ORTHO05D005161 5.0e-102 375.9 427 45.0
Ca_13366_v3 Cicer arietinum L. HOM05D003321 ORTHO05D005161 6.5e-102 375.6 434 44.5
Lalb_Chr06g0175461 Lupinus albus HOM05D003321 ORTHO05D005161 6.5e-102 375.6 455 43.7
Gohir.A11G069100 Gossypium hirsutum HOM05D003321 ORTHO05D005161 8.5e-102 375.2 436 44.0
Atru.chr8.1903 Acer truncatum HOM05D003321 ORTHO05D005161 1.1e-101 374.8 459 43.8
Glyma.03G031900 Glycine max HOM05D003321 ORTHO05D005161 1.1e-101 374.8 434 43.5
Gohir.D11G073100 Gossypium hirsutum HOM05D003321 ORTHO05D005161 1.1e-101 374.8 442 44.1
HanXRQChr02g0056421 Helianthus annuus HOM05D003321 ORTHO05D005161 1.1e-101 374.8 453 43.5
Manes.15G172400 Manihot esculenta HOM05D003321 ORTHO05D005161 1.1e-101 374.8 453 44.8
BcaC06g30900 Brassica carinata HOM05D003321 ORTHO05D005161 1.5e-101 374.4 453 43.3
Phvul.004G026200 Phaseolus vulgaris HOM05D003321 ORTHO05D005161 1.5e-101 374.4 430 44.4
Lj2g0024928 Lotus japonicus HOM05D003321 ORTHO05D005161 2.5e-101 373.6 434 44.2
Lju41A25T61 Lonicera japonica HOM05D003321 ORTHO05D005161 3.2e-101 373.2 455 43.3
CAN.G206.123 Capsicum annuum HOM05D003321 ORTHO05D005161 4.2e-101 372.9 435 43.0
COL.COLO4_25165 Corchorus olitorius HOM05D003321 ORTHO05D005161 4.2e-101 372.9 434 44.0
Manes.15G176600 Manihot esculenta HOM05D003321 ORTHO05D005161 4.2e-101 372.9 453 44.4
Oeu037176.3 Olea europaea HOM05D003321 ORTHO05D005161 4.2e-101 372.9 469 42.9
Peaxi162Scf00129g00539 Petunia axillaris HOM05D003321 ORTHO05D005161 4.2e-101 372.9 441 42.6
Phvul.011G212400 Phaseolus vulgaris HOM05D003321 ORTHO05D005161 4.2e-101 372.9 437 43.7
RhsimUnG0055900 Rhododendron simsii HOM05D003321 ORTHO05D005161 4.2e-101 372.9 455 43.1
TPR.G20170 Trifolium pratense HOM05D003321 ORTHO05D005161 4.2e-101 372.9 439 43.7
VMungo0464G0737 Vigna mungo HOM05D003321 ORTHO05D005161 4.2e-101 372.9 434 44.0
VMungo1127G1679 Vigna mungo HOM05D003321 ORTHO05D005161 4.2e-101 372.9 439 43.5
Duzib264G0140 Durio zibethinus HOM05D003321 ORTHO05D005161 5.5e-101 372.5 436 44.5
Ciclev10011266m.g Citrus clementina HOM05D003321 ORTHO05D005161 7.2e-101 372.1 459 44.0
Lj2g0002473 Lotus japonicus HOM05D003321 ORTHO05D005161 7.2e-101 372.1 434 44.5
MD09G1047500 Malus domestica HOM05D003321 ORTHO05D005161 7.2e-101 372.1 445 44.7
PGSC0003DMG400018099 Solanum tuberosum HOM05D003321 ORTHO05D005161 7.2e-101 372.1 431 43.2
MD17G1047600 Malus domestica HOM05D003321 ORTHO05D005161 9.4e-101 371.7 445 44.0
Os01g0184900 Oryza sativa ssp. japonica HOM05D003321 ORTHO05D005161 9.4e-101 371.7 454 44.5
AagrBONN_evm.TU.Sc2ySwM_362.1279 Anthoceros agrestis HOM05D003321 ORTHO05D005161 1.2e-100 371.3 451 42.8
CARHR151710 Cardamine hirsuta HOM05D003321 ORTHO05D005161 1.2e-100 371.3 459 43.1
Gohir.A09G021800 Gossypium hirsutum HOM05D003321 ORTHO05D005161 1.2e-100 371.3 434 43.8
SGA_v2.0_scaffold205G41764 Striga asiatica HOM05D003321 ORTHO05D005161 1.2e-100 371.3 430 44.2
BcaC06g33636 Brassica carinata HOM05D003321 ORTHO05D005161 1.6e-100 370.9 453 42.8
BolC7t44284H Brassica oleracea HOM05D003321 ORTHO05D005161 1.6e-100 370.9 453 42.8
Medtr5g082570 Medicago truncatula HOM05D003321 ORTHO05D005161 1.6e-100 370.9 434 43.3
Nitab4.5_0003314g0110 Nicotiana tabacum HOM05D003321 ORTHO05D005161 1.6e-100 370.9 436 42.7
BraA06t26956Z Brassica rapa HOM05D003321 ORTHO05D005161 2.1e-100 370.5 453 42.6
Dinv33721 Davidia involucrata HOM05D003321 ORTHO05D005161 2.1e-100 370.5 434 44.0
Prupe.3G271500 Prunus persica HOM05D003321 ORTHO05D005161 2.1e-100 370.5 453 43.0
TPR.G38431 Trifolium pratense HOM05D003321 ORTHO05D005161 2.1e-100 370.5 438 43.6
Lsat_1_v5_gn_2_88641 Lactuca sativa HOM05D003321 ORTHO05D005161 2.7e-100 370.2 445 43.6
Nitab4.5_0009739g0020 Nicotiana tabacum HOM05D003321 ORTHO05D005161 2.7e-100 370.2 447 41.6
Potri.004G124000 Populus trichocarpa HOM05D003321 ORTHO05D005161 2.7e-100 370.2 459 43.8
Solyc02g087710.3 Solanum lycopersicum HOM05D003321 ORTHO05D005161 2.7e-100 370.2 431 42.9
Sopen02g032440 Solanum pennellii HOM05D003321 ORTHO05D005161 2.7e-100 370.2 431 42.9
TWI60G1051 Tripterygium wilfordii HOM05D003321 ORTHO05D005161 2.7e-100 370.2 430 44.0
BcaC03g17525 Brassica carinata HOM05D003321 ORTHO05D005161 3.6e-100 369.8 459 43.4
A02p36020 Brassica napus HOM05D003321 ORTHO05D005161 3.6e-100 369.8 459 43.4
C02p54860 Brassica napus HOM05D003321 ORTHO05D005161 3.6e-100 369.8 459 43.4
C07p37670 Brassica napus HOM05D003321 ORTHO05D005161 3.6e-100 369.8 453 42.6
BraA02t08601Z Brassica rapa HOM05D003321 ORTHO05D005161 3.6e-100 369.8 459 43.4
Sp2g17380 Schrenkiella parvula HOM05D003321 ORTHO05D005161 3.6e-100 369.8 459 43.1
Haze_14579 Corylus avellana HOM05D003321 ORTHO05D005161 4.7e-100 369.4 438 44.1
Gohir.D09G021100 Gossypium hirsutum HOM05D003321 ORTHO05D005161 4.7e-100 369.4 434 43.5
Psat6g008440 Pisum sativum HOM05D003321 ORTHO05D005161 4.7e-100 369.4 458 42.4
RcHm_v2.0_Chr2g0169081 Rosa chinensis HOM05D003321 ORTHO05D005161 4.7e-100 369.4 453 43.3
PGSC0003DMG400001414 Solanum tuberosum HOM05D003321 ORTHO05D005161 4.7e-100 369.4 431 42.9
BcaB07g30122 Brassica carinata HOM05D003321 ORTHO05D005161 6.1e-100 369.0 460 43.3
A06p40380 Brassica napus HOM05D003321 ORTHO05D005161 6.1e-100 369.0 453 42.4
CiPaw.03G029600 Carya illinoinensis HOM05D003321 ORTHO05D005161 6.1e-100 369.0 430 44.7
CiPaw.04G019600 Carya illinoinensis HOM05D003321 ORTHO05D005161 6.1e-100 369.0 448 44.4
MELO3C009890.2 Cucumis melo HOM05D003321 ORTHO05D005161 6.1e-100 369.0 444 44.4
AUR62011989 Chenopodium quinoa HOM05D003321 ORTHO05D005161 8.0e-100 368.6 438 42.9
THA.LOC104805449 Tarenaya hassleriana HOM05D003321 ORTHO05D005161 8.0e-100 368.6 453 42.6
BolC2t11547H Brassica oleracea HOM05D003321 ORTHO05D005161 1.0e-99 368.2 459 43.4
CANSAT64G1196 Cannabis sativa HOM05D003321 ORTHO05D005161 1.0e-99 368.2 434 43.5
MBI17_g17503_MAGBIO Magnolia biondii HOM05D003321 ORTHO05D005161 1.0e-99 368.2 446 44.2
PSO591G0346 Papaver somniferum HOM05D003321 ORTHO05D005161 1.0e-99 368.2 435 43.7
PSO832G3448 Papaver somniferum HOM05D003321 ORTHO05D005161 1.0e-99 368.2 435 43.7
MSTRG.3218 Avicennia marina HOM05D003321 ORTHO05D005161 2.3e-99 367.1 461 42.7
CsaV3_3G041690 Cucumis sativus L. HOM05D003321 ORTHO05D005161 2.3e-99 367.1 444 44.4
Actinidia06077 Actinidia chinensis HOM05D003321 ORTHO05D005161 4.0e-99 366.3 459 43.4
EL10Ac5g10521 Beta vulgaris HOM05D003321 ORTHO05D005161 4.0e-99 366.3 451 42.6
Aqoxy3G03281 Aquilegia oxysepala HOM05D003321 ORTHO05D005161 5.2e-99 365.9 449 43.7
PGR142G0788 Punica granatum HOM05D003321 ORTHO05D005161 5.2e-99 365.9 442 43.7
Thecc.04G075500 Theobroma cacao HOM05D003321 ORTHO05D005161 5.2e-99 365.9 434 43.5
Hund09520 Selenicereus undatus HOM05D003321 ORTHO05D005161 6.7e-99 365.5 449 42.5
Zm00001eb282920 Zea mays HOM05D003321 ORTHO05D005161 6.7e-99 365.5 454 43.8
Actinidia23569 Actinidia chinensis HOM05D003321 ORTHO05D005161 8.8e-99 365.2 459 43.4
Psat2g033240 Pisum sativum HOM05D003321 ORTHO05D005161 8.8e-99 365.2 437 43.9
QL02p080714 Quercus lobata HOM05D003321 ORTHO05D005161 8.8e-99 365.2 442 43.4
Aa31LG2G4470 Aethionema arabicum HOM05D003321 ORTHO05D005161 1.1e-98 364.8 453 41.9
AUR62032308 Chenopodium quinoa HOM05D003321 ORTHO05D005161 1.1e-98 364.8 432 43.3
DCAR_011159 Daucus carota HOM05D003321 ORTHO05D005161 1.1e-98 364.8 453 42.6
Sed0022026 Sechium edule HOM05D003321 ORTHO05D005161 1.5e-98 364.4 450 44.2
Potri.017G078500 Populus trichocarpa HOM05D003321 ORTHO05D005161 2.0e-98 364.0 459 43.6
CSS0001778 Camellia sinensis var. sinensis HOM05D003321 ORTHO05D005161 3.3e-98 363.2 449 42.8
ClCG10G014840 Citrullus lanatus HOM05D003321 ORTHO05D005161 4.4e-98 362.8 444 44.1
FAN14G0823 Fragaria x ananassa HOM05D003321 ORTHO05D005161 9.7e-98 361.7 438 43.4
Carub.0005s0728 Capsella rubella HOM05D003321 ORTHO05D005161 2.2e-97 360.5 454 43.0
FAN05G4145 Fragaria x ananassa HOM05D003321 ORTHO05D005161 2.2e-97 360.5 434 44.2
Eucgr.I01920 Eucalyptus grandis HOM05D003321 ORTHO05D005161 2.8e-97 360.1 439 42.8
Gorai.006G024900 Gossypium raimondii HOM05D003321 ORTHO05D005161 3.7e-97 359.8 422 43.8
arahy.Tifrunner.gnm1.ann1.T0AAPV Arachis hypogaea HOM05D003321 ORTHO05D005161 4.8e-97 359.4 451 43.0
FAN02G3930 Fragaria x ananassa HOM05D003321 ORTHO05D005161 6.3e-97 359.0 434 43.5
FvH4_6g49210 Fragaria vesca HOM05D003321 ORTHO05D005161 8.2e-97 358.6 434 43.5
Hund02846 Selenicereus undatus HOM05D003321 ORTHO05D005161 8.2e-97 358.6 453 42.4
SalBow1G0468 Salvia bowleyana HOM05D003321 ORTHO05D005161 1.1e-96 358.2 436 42.9
Sc17g0001240 Simmondsia chinensis HOM05D003321 ORTHO05D005161 1.4e-96 357.8 453 41.9
TAR622G1354 Trochodendron aralioides HOM05D003321 ORTHO05D005161 1.8e-96 357.5 436 43.3
Ah.11g050340 Amaranthus hybridus HOM05D003321 ORTHO05D005161 2.4e-96 357.1 451 42.1
FAN09G2289 Fragaria x ananassa HOM05D003321 ORTHO05D005161 2.4e-96 357.1 434 43.5
FAN14G5472 Fragaria x ananassa HOM05D003321 ORTHO05D005161 2.4e-96 357.1 434 43.5
FAN09G2305 Fragaria x ananassa HOM05D003321 ORTHO05D005161 5.3e-96 355.9 434 43.3
ECA238G2291 Erigeron canadensis HOM05D003321 ORTHO05D005161 7.0e-96 355.5 440 42.7
CDE05G0865 Ceratophyllum demersum HOM05D003321 ORTHO05D005161 1.6e-95 354.4 438 44.3
Thhalv10003803m.g Eutrema salsugineum HOM05D003321 ORTHO05D005161 1.6e-95 354.4 453 42.2
AT3G28730 Arabidopsis thaliana HOM05D003321 ORTHO05D005161 2.7e-95 353.6 455 40.9
Migut.H00892 Erythranthe guttata HOM05D003321 ORTHO05D005161 2.7e-95 353.6 454 41.6
Migut.K01331 Erythranthe guttata HOM05D003321 ORTHO05D005161 1.7e-94 350.9 430 42.6
HPP92_017969 Vanilla planifolia HOM05D003321 ORTHO05D005161 1.7e-94 350.9 432 42.4
AL5G18450 Arabidopsis lyrata HOM05D003321 ORTHO05D005161 8.5e-94 348.6 430 41.4
Sabra17G0069700 Salix brachista HOM05D003321 ORTHO05D005161 3.6e-92 343.2 453 41.5
Cre01.g029450 Chlamydomonas reinhardtii HOM05D003321 ORTHO05D005161 1.4e-91 341.3 448 44.6
vmacro05729 Vaccinium macrocarpon HOM05D003321 ORTHO05D005161 5.7e-90 335.9 453 41.1
PSO384G3545 Papaver somniferum HOM05D003321 ORTHO05D005161 3.7e-89 333.2 436 40.4
Zm00001eb337810 Zea mays HOM05D003321 ORTHO05D005161 6.3e-81 305.8 341 47.2
MCO12G387 Micromonas commoda HOM05D003321 ORTHO05D005161 4.1e-80 303.1 444 37.2
Hma1.2p1_0247F.1_g101800 Hydrangea macrophylla HOM05D003321 ORTHO05D005161 2.0e-79 300.8 353 45.6
unitig_899.g15507 Utricularia gibba HOM05D003321 ORTHO05D005161 2.7e-79 300.4 320 46.2
Nitab4.5_0000564g0350 Nicotiana tabacum HOM05D003321 ORTHO05D005161 1.0e-70 271.9 431 36.2
SGA_v2.0_scaffold205G41773 Striga asiatica HOM05D003321 ORTHO05D005161 1.2e-68 265.0 389 37.5
Cc07_g03060 Coffea canephora HOM05D003321 ORTHO05D005161 6.6e-62 242.7 306 41.5
Rhsim05G0106500 Rhododendron simsii HOM05D003321 ORTHO05D005161 7.5e-58 229.2 474 31.4
Cfa021690 Carpinus fangiana HOM05D003321 ORTHO05D005161 1.6e-55 221.5 456 32.2
Glyma.13G064800 Glycine max HOM05D003321 ORTHO05D005161 1.0e-54 218.8 215 50.2
Lj1g0009615 Lotus japonicus HOM05D003321 ORTHO05D005161 1.3e-54 218.4 246 44.7
Duzib147G1608 Durio zibethinus HOM05D003321 ORTHO05D005161 1.2e-50 205.3 432 30.8
CBR_g20179 Chara braunii HOM05D003321 ORTHO05D005161 3.8e-49 200.3 437 30.7
Thhalv10008631m.g Eutrema salsugineum HOM05D003321 ORTHO05D005161 3.9e-46 190.3 230 41.3
Psat3g002600 Pisum sativum HOM05D003321 ORTHO05D004492 5.8e-42 176.4 303 33.3
CDE05G3094 Ceratophyllum demersum HOM05D003321 ORTHO05D005161 1.9e-37 161.4 197 45.2
Aqoxy3G00239 Aquilegia oxysepala HOM05D003321 ORTHO05D019677 4.5e-34 150.2 189 40.7
Cfa007905 Carpinus fangiana HOM05D003321 ORTHO05D005161 1.7e-33 148.3 165 44.2
Aqoxy3G03302 Aquilegia oxysepala HOM05D003321 ORTHO05D019677 2.7e-31 141.0 201 38.8
CSS0041948 Camellia sinensis var. sinensis HOM05D003321 ORTHO05D005161 1.3e-30 138.7 201 36.8
CSS0018217 Camellia sinensis var. sinensis HOM05D003321 ORTHO05D005161 1.8e-30 138.3 201 36.8
Cc07_g03050 Coffea canephora HOM05D003321 ORTHO05D005161 3.3e-29 134.0 121 53.7
HanXRQChr04g0102631 Helianthus annuus HOM05D003321 ORTHO05D019677 1.3e-28 132.1 121 52.9
Oeu033336.1 Olea europaea HOM05D003321 ORTHO05D005161 6.2e-28 129.8 231 33.8
HanXRQChr06g0173771 Helianthus annuus HOM05D003321 ORTHO05D019677 3.8e-25 120.6 105 52.4
HanXRQChr01g0022931 Helianthus annuus HOM05D003321 ORTHO05D019677 3.5e-23 114.0 106 50.9
HanXRQChr15g0486151 Helianthus annuus HOM05D003321 ORTHO05D019677 3.7e-20 104.0 86 55.8
HanXRQChr11g0334501 Helianthus annuus HOM05D003321 ORTHO05D019677 4.8e-20 103.6 86 55.8
Sopen02g032430 Solanum pennellii HOM05D003321 ORTHO05D051122 5.5e-16 90.1 172 32.0
PGSC0003DMG400001413 Solanum tuberosum HOM05D003321 ORTHO05D394828 5.5e-16 90.1 165 32.1
Lsat_1_v5_gn_5_101681 Lactuca sativa HOM05D003321 ORTHO05D000541 7.1e-16 89.7 116 41.4
Hma1.2p1_0105F.1_g050590 Hydrangea macrophylla HOM05D003321 ORTHO05D005161 1.2e-15 89.0 128 39.8
BcaB01g02066 Brassica carinata HOM05D003321 ORTHO05D005161 4.3e-13 80.5 180 31.7
Solyc02g087680.1 Solanum lycopersicum HOM05D003321 ORTHO05D051122 2.1e-12 78.2 127 37.8
Lsat_1_v5_gn_8_150800 Lactuca sativa HOM05D003321 ORTHO05D033839 3.1e-11 74.3 211 27.0
ECA236G4825 Erigeron canadensis HOM05D003321 ORTHO05D186893 6.9e-11 73.2 435 21.6
TAR371G0510 Trochodendron aralioides HOM05D003321 ORTHO05D414592 3.8e-09 67.4 97 36.1
Hma1.2p1_0235F.1_g098910 Hydrangea macrophylla HOM05D003321 ORTHO05D005161 2.5e-08 64.7 89 42.7
ECA234G4637 Erigeron canadensis HOM05D003321 ORTHO05D008593 9.3e-08 62.8 98 33.7
unitig_899.g15508 Utricularia gibba HOM05D007118 ORTHO05D008957 1.0e-06 59.3 99 31.3


User provided reference genes

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