Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PRCOL_00005585 Prasinoderma coloniale HOM05D005300 ORTHO05D006622 8.3e-208 726.9 383 100.0
AagrBONN_evm.TU.Sc2ySwM_344.3933 Anthoceros agrestis HOM05D005300 ORTHO05D006622 5.0e-112 408.7 369 58.3
MCO09G462 Micromonas commoda HOM05D005300 ORTHO05D006622 4.7e-110 402.1 367 58.3
Mapoly0064s0026 Marchantia polymorpha HOM05D005300 ORTHO05D006622 7.0e-106 388.3 371 55.5
SMO351G0125 Selaginella moellendorffii HOM05D005300 ORTHO05D006622 3.5e-105 386.0 374 54.5
Pp3c19_19130 Physcomitrium patens HOM05D005300 ORTHO05D006622 8.5e-104 381.3 372 57.0
CBR_g50915 Chara braunii HOM05D005300 ORTHO05D006622 1.4e-101 374.0 390 50.5
Pp3c9_3170 Physcomitrium patens HOM05D005300 ORTHO05D006622 8.3e-99 364.8 377 53.8
Aqoxy1G02098 Aquilegia oxysepala HOM05D005300 ORTHO05D006622 3.1e-98 362.8 363 52.9
Zm00001eb219720 Zea mays HOM05D005300 ORTHO05D006622 1.2e-97 360.9 373 53.9
EL10Ac4g10369 Beta vulgaris HOM05D005300 ORTHO05D006622 3.5e-97 359.4 363 52.9
Psat0s4267g0040 Pisum sativum HOM05D005300 ORTHO05D006622 5.9e-97 358.6 359 52.9
CARHR126300 Cardamine hirsuta HOM05D005300 ORTHO05D006622 2.3e-96 356.7 361 52.9
Lalb_Chr03g0028691 Lupinus albus HOM05D005300 ORTHO05D006622 2.9e-96 356.3 361 52.9
Manes.12G074100 Manihot esculenta HOM05D005300 ORTHO05D006622 2.9e-96 356.3 355 53.2
TAR626G0150 Trochodendron aralioides HOM05D005300 ORTHO05D006622 2.9e-96 356.3 355 53.5
Sp4g14840 Schrenkiella parvula HOM05D005300 ORTHO05D006622 3.8e-96 355.9 361 53.2
AUR62000009 Chenopodium quinoa HOM05D005300 ORTHO05D006622 5.0e-96 355.5 367 52.3
PSO541G4463 Papaver somniferum HOM05D005300 ORTHO05D006622 5.0e-96 355.5 360 52.5
PSO675G7879 Papaver somniferum HOM05D005300 ORTHO05D006622 5.0e-96 355.5 360 52.2
Sed0016669 Sechium edule HOM05D005300 ORTHO05D006622 5.0e-96 355.5 361 53.7
PGSC0003DMG400028948 Solanum tuberosum HOM05D005300 ORTHO05D006622 5.0e-96 355.5 355 53.5
Sopen07g025910 Solanum pennellii HOM05D005300 ORTHO05D006622 6.6e-96 355.1 355 53.5
COL.COLO4_11250 Corchorus olitorius HOM05D005300 ORTHO05D006622 8.6e-96 354.8 355 53.0
Potri.002G228600 Populus trichocarpa HOM05D005300 ORTHO05D006622 8.6e-96 354.8 361 53.5
Potri.014G154000 Populus trichocarpa HOM05D005300 ORTHO05D006622 8.6e-96 354.8 361 53.5
Zm00001eb049010 Zea mays HOM05D005300 ORTHO05D006622 8.6e-96 354.8 375 53.6
arahy.Tifrunner.gnm1.ann1.B9TUKK Arachis hypogaea HOM05D005300 ORTHO05D006622 1.1e-95 354.4 361 51.8
arahy.Tifrunner.gnm1.ann1.SJMT99 Arachis hypogaea HOM05D005300 ORTHO05D006622 1.1e-95 354.4 361 51.8
Medtr4g048590 Medicago truncatula HOM05D005300 ORTHO05D006622 1.1e-95 354.4 359 52.4
Phvul.011G103000 Phaseolus vulgaris HOM05D005300 ORTHO05D006622 1.1e-95 354.4 361 51.5
Carub.0004s1382 Capsella rubella HOM05D005300 ORTHO05D006622 1.5e-95 354.0 361 52.4
Thhalv10017977m.g Eutrema salsugineum HOM05D005300 ORTHO05D006622 1.9e-95 353.6 366 53.0
Solyc07g052290.1 Solanum lycopersicum HOM05D005300 ORTHO05D006622 2.5e-95 353.2 355 53.2
CAN.G1296.1 Capsicum annuum HOM05D005300 ORTHO05D006622 4.3e-95 352.4 370 52.2
Glyma.12G098200 Glycine max HOM05D005300 ORTHO05D006622 4.3e-95 352.4 361 51.2
Sabra02G0174700 Salix brachista HOM05D005300 ORTHO05D006622 4.3e-95 352.4 361 53.7
TPR.G4668 Trifolium pratense HOM05D005300 ORTHO05D006622 5.6e-95 352.1 359 52.1
TWI18G0506 Tripterygium wilfordii HOM05D005300 ORTHO05D006622 5.6e-95 352.1 355 53.0
Ciclev10015229m.g Citrus clementina HOM05D005300 ORTHO05D006622 7.3e-95 351.7 361 53.5
MELO3C019273.2 Cucumis melo HOM05D005300 ORTHO05D006622 7.3e-95 351.7 361 53.2
Aa31LG1G19610 Aethionema arabicum HOM05D005300 ORTHO05D006622 9.5e-95 351.3 369 51.5
AL1G14900 Arabidopsis lyrata HOM05D005300 ORTHO05D006622 9.5e-95 351.3 355 52.4
AUR62019178 Chenopodium quinoa HOM05D005300 ORTHO05D006622 9.5e-95 351.3 366 51.4
AUR62019179 Chenopodium quinoa HOM05D005300 ORTHO05D006622 9.5e-95 351.3 366 51.4
Glyma.06G306700 Glycine max HOM05D005300 ORTHO05D006622 9.5e-95 351.3 361 51.2
Duzib251G0812 Durio zibethinus HOM05D005300 ORTHO05D006622 1.2e-94 350.9 366 52.2
AL4G27860 Arabidopsis lyrata HOM05D005300 ORTHO05D006622 1.6e-94 350.5 361 51.5
ClCG02G008830 Citrullus lanatus HOM05D005300 ORTHO05D006622 1.6e-94 350.5 361 52.9
FvH4_6g43160 Fragaria vesca HOM05D005300 ORTHO05D006622 1.6e-94 350.5 369 51.2
BraA05t20264Z Brassica rapa HOM05D005300 ORTHO05D006622 2.1e-94 350.1 369 52.6
Carub.0001s0441 Capsella rubella HOM05D005300 ORTHO05D006622 2.1e-94 350.1 355 51.8
Gohir.A12G174000 Gossypium hirsutum HOM05D005300 ORTHO05D006622 2.1e-94 350.1 366 52.2
Lsat_1_v5_gn_9_107520 Lactuca sativa HOM05D005300 ORTHO05D006622 2.1e-94 350.1 355 52.7
A05p13230 Brassica napus HOM05D005300 ORTHO05D006622 2.8e-94 349.7 369 52.6
TAR624G0116 Trochodendron aralioides HOM05D005300 ORTHO05D006622 2.8e-94 349.7 355 52.1
Atru.chr6.3194 Acer truncatum HOM05D005300 ORTHO05D006622 3.6e-94 349.4 361 52.1
BcaC02g11315 Brassica carinata HOM05D005300 ORTHO05D006622 3.6e-94 349.4 369 52.3
C04p17170 Brassica napus HOM05D005300 ORTHO05D006622 3.6e-94 349.4 369 52.3
BolC4t23267H Brassica oleracea HOM05D005300 ORTHO05D006622 3.6e-94 349.4 369 52.3
CSS0024072 Camellia sinensis var. sinensis HOM05D005300 ORTHO05D006622 3.6e-94 349.4 353 52.4
FAN05G3018 Fragaria x ananassa HOM05D005300 ORTHO05D006622 3.6e-94 349.4 369 51.2
Gohir.D12G176700 Gossypium hirsutum HOM05D005300 ORTHO05D006622 3.6e-94 349.4 366 52.2
Gorai.008G189100 Gossypium raimondii HOM05D005300 ORTHO05D006622 3.6e-94 349.4 366 52.2
BcaB02g10466 Brassica carinata HOM05D005300 ORTHO05D006622 4.7e-94 349.0 361 52.9
Cpa.g.sc87.86 Carica papaya HOM05D005300 ORTHO05D006622 4.7e-94 349.0 368 51.1
Nn1g03500 Nelumbo nucifera HOM05D005300 ORTHO05D006622 4.7e-94 349.0 363 51.2
ECA240G1660 Erigeron canadensis HOM05D005300 ORTHO05D006622 6.1e-94 348.6 355 53.2
AT1G05140 Arabidopsis thaliana HOM05D005300 ORTHO05D006622 8.0e-94 348.2 355 51.8
Prupe.3G216500 Prunus persica HOM05D005300 ORTHO05D006622 8.0e-94 348.2 355 50.7
BolC5t29115H Brassica oleracea HOM05D005300 ORTHO05D006622 1.0e-93 347.8 355 52.4
FAN02G3120 Fragaria x ananassa HOM05D005300 ORTHO05D006622 1.0e-93 347.8 369 50.9
RcHm_v2.0_Chr2g0159081 Rosa chinensis HOM05D005300 ORTHO05D006622 1.0e-93 347.8 355 52.1
DCAR_012943 Daucus carota HOM05D005300 ORTHO05D006622 1.4e-93 347.4 359 52.6
Peaxi162Scf00007g00072 Petunia axillaris HOM05D005300 ORTHO05D006622 2.3e-93 346.7 369 52.0
Ca_03278_v3 Cicer arietinum L. HOM05D005300 ORTHO05D006622 3.0e-93 346.3 361 51.0
BraA10t42640Z Brassica rapa HOM05D005300 ORTHO05D006622 4.0e-93 345.9 355 52.4
THA.LOC104826148 Tarenaya hassleriana HOM05D005300 ORTHO05D006622 4.0e-93 345.9 361 51.2
Thecc.02G365500 Theobroma cacao HOM05D005300 ORTHO05D006622 4.0e-93 345.9 366 52.2
Lj3g0003317 Lotus japonicus HOM05D005300 ORTHO05D006622 6.8e-93 345.1 359 51.3
Sabra14G0116500 Salix brachista HOM05D005300 ORTHO05D006622 6.8e-93 345.1 361 52.4
PGR042G1729 Punica granatum HOM05D005300 ORTHO05D006622 8.9e-93 344.7 355 52.4
TWI36G1224 Tripterygium wilfordii HOM05D005300 ORTHO05D006622 8.9e-93 344.7 355 51.5
Pp3c18_14380 Physcomitrium patens HOM05D005300 ORTHO05D006622 1.5e-92 344.0 372 52.4
MD09G1110000 Malus domestica HOM05D005300 ORTHO05D006622 2.0e-92 343.6 356 50.8
A10p03670 Brassica napus HOM05D005300 ORTHO05D006622 2.6e-92 343.2 355 52.1
Oeu007114.1 Olea europaea HOM05D005300 ORTHO05D006622 2.6e-92 343.2 355 51.8
Sc21g0001390 Simmondsia chinensis HOM05D005300 ORTHO05D006622 2.6e-92 343.2 361 51.0
Rhsim04G0052800 Rhododendron simsii HOM05D005300 ORTHO05D006622 3.4e-92 342.8 355 53.0
CARHR004610 Cardamine hirsuta HOM05D005300 ORTHO05D006622 5.7e-92 342.0 362 50.8
Lj1P766T34 Lonicera japonica HOM05D005300 ORTHO05D006622 1.3e-91 340.9 369 50.7
C05p03380 Brassica napus HOM05D005300 ORTHO05D006622 1.7e-91 340.5 352 51.4
CiPaw.04G115200 Carya illinoinensis HOM05D005300 ORTHO05D006622 2.2e-91 340.1 355 51.0
HanXRQChr10g0295521 Helianthus annuus HOM05D005300 ORTHO05D006622 2.9e-91 339.7 367 51.5
CSS0027646 Camellia sinensis var. sinensis HOM05D005300 ORTHO05D006622 6.4e-91 338.6 355 51.0
CANSAT64G1405 Cannabis sativa HOM05D005300 ORTHO05D006622 6.4e-91 338.6 355 51.0
Os03g0579000 Oryza sativa ssp. japonica HOM05D005300 ORTHO05D006622 8.3e-91 338.2 365 51.8
MSTRG.14149 Avicennia marina HOM05D005300 ORTHO05D006622 1.4e-90 337.4 355 51.5
Cre03.g144164 Chlamydomonas reinhardtii HOM05D005300 ORTHO05D006622 1.4e-90 337.4 381 51.2
Cc05_g04360 Coffea canephora HOM05D005300 ORTHO05D006622 1.8e-90 337.0 369 50.1
QL08p032961 Quercus lobata HOM05D005300 ORTHO05D006622 5.4e-90 335.5 355 50.4
Migut.H01227 Erythranthe guttata HOM05D005300 ORTHO05D006622 7.0e-90 335.1 361 50.4
SGA_v2.0_scaffold159G37576 Striga asiatica HOM05D005300 ORTHO05D006622 3.5e-89 332.8 360 51.1
SalBow1G7639 Salvia bowleyana HOM05D005300 ORTHO05D006622 5.9e-89 332.0 363 49.6
FAN09G2150 Fragaria x ananassa HOM05D005300 ORTHO05D006622 7.8e-89 331.6 357 51.0
ATR0794G038 Amborella trichopoda HOM05D005300 ORTHO05D006622 1.0e-88 331.3 363 49.6
Sp1g03990 Schrenkiella parvula HOM05D005300 ORTHO05D006622 3.9e-88 329.3 355 50.1
SpUn0024_0150 Schrenkiella parvula HOM05D005300 ORTHO05D006622 3.9e-88 329.3 355 50.1
Eucgr.A01121 Eucalyptus grandis HOM05D005300 ORTHO05D006622 6.2e-86 322.0 361 50.7
Dinv39717 Davidia involucrata HOM05D005300 ORTHO05D006622 4.0e-85 319.3 333 50.5
Lalb_Chr19g0135951 Lupinus albus HOM05D005300 ORTHO05D006622 4.4e-84 315.8 356 48.6
AT2G32480 Arabidopsis thaliana HOM05D005300 ORTHO05D006622 7.5e-84 315.1 361 48.8
CiPaw.03G159400 Carya illinoinensis HOM05D005300 ORTHO05D006622 7.3e-79 298.5 361 46.8
SEGI_01159 Sequoiadendron giganteum HOM05D005300 ORTHO05D006622 4.7e-78 295.8 357 49.0
Actinidia08387 Actinidia chinensis HOM05D005300 ORTHO05D006622 4.0e-77 292.7 305 51.8
MBI02_g21883_MAGBIO Magnolia biondii HOM05D005300 ORTHO05D006622 5.4e-74 282.3 304 48.4
CsaV3_2G034890 Cucumis sativus L. HOM05D005300 ORTHO05D006622 2.7e-73 280.0 300 51.7
Nitab4.5_0009179g0010 Nicotiana tabacum HOM05D005300 ORTHO05D006622 3.5e-73 279.6 301 50.8
CDE12G0066 Ceratophyllum demersum HOM05D005300 ORTHO05D006622 2.5e-71 273.5 295 51.5
GSVIVG01030436001 Vitis vinifera HOM05D005300 ORTHO05D006622 1.7e-67 260.8 337 44.8
Dinv05423 Davidia involucrata HOM05D005300 ORTHO05D006622 4.9e-67 259.2 306 47.4
BcaC05g24426 Brassica carinata HOM05D005300 ORTHO05D006622 7.3e-63 245.4 279 47.3
Nitab4.5_0002137g0020 Nicotiana tabacum HOM05D005300 ORTHO05D006622 3.6e-62 243.0 275 49.8
CDE01G0785 Ceratophyllum demersum HOM05D001211 ORTHO05D001084 6.2e-62 242.3 296 45.3
Haze_12853 Corylus avellana HOM05D005300 ORTHO05D006622 2.8e-54 216.9 282 44.7
BcaB06g28596 Brassica carinata HOM05D005300 ORTHO05D006622 9.0e-45 185.3 251 45.0
HPP92_012410 Vanilla planifolia HOM05D005300 ORTHO05D006622 6.9e-37 159.1 142 55.6
BcaC02g07921 Brassica carinata HOM05D005300 ORTHO05D006622 1.0e-35 155.2 324 35.2
Zm00001eb417680 Zea mays HOM05D005300 ORTHO05D006622 7.6e-28 129.0 118 56.8
C04p61940 Brassica napus HOM05D005300 ORTHO05D006622 7.2e-26 122.5 210 40.5
ATR0681G167 Amborella trichopoda HOM05D005300 ORTHO05D006622 1.0e-24 118.6 104 56.7
ATR0069G018 Amborella trichopoda HOM05D005300 ORTHO05D006622 1.1e-23 115.2 169 40.8
ATR0069G030 Amborella trichopoda HOM05D005300 ORTHO05D006622 2.8e-22 110.5 102 52.9
A04p24950 Brassica napus HOM05D005300 ORTHO05D006622 4.5e-20 103.2 214 35.0
unitig_749.g13943 Utricularia gibba HOM05D005300 ORTHO05D006622 5.5e-18 96.3 72 62.5
ATR0753G011 Amborella trichopoda HOM05D005300 ORTHO05D006622 9.4e-18 95.5 103 47.6
Cre17.g730100 Chlamydomonas reinhardtii HOM05D005300 ORTHO05D146069 3.0e-16 90.5 521 22.8
SMO163G0076 Selaginella moellendorffii HOM05D005300 ORTHO05D006622 3.3e-15 87.0 109 45.0
ATR0820G169 Amborella trichopoda HOM05D005300 ORTHO05D006622 4.8e-14 83.2 164 36.0
Os05g0388025 Oryza sativa ssp. japonica HOM05D005300 ORTHO05D299932 1.0e-11 75.5 76 53.9
ATR0775G001 Amborella trichopoda HOM05D005300 ORTHO05D006622 5.0e-11 73.2 86 47.7


User provided reference genes

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