Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PRCOL_00004676 Prasinoderma coloniale HOM05D005410 ORTHO05D007394 1.3e-154 549.7 267 100.0
MCO13G101 Micromonas commoda HOM05D005410 ORTHO05D007394 3.5e-72 275.8 260 50.0
Cre01.g031100 Chlamydomonas reinhardtii HOM05D005410 ORTHO05D007394 4.3e-62 242.3 263 44.9
Mapoly0020s0152 Marchantia polymorpha HOM05D005410 ORTHO05D007394 1.8e-55 220.3 256 41.8
AUR62005847 Chenopodium quinoa HOM05D005410 ORTHO05D007394 7.4e-54 214.9 258 40.7
SGA_v2.0_scaffold6G03314 Striga asiatica HOM05D005410 ORTHO05D007394 7.4e-54 214.9 259 42.1
HanXRQChr07g0186621 Helianthus annuus HOM05D005410 ORTHO05D007394 9.6e-54 214.5 258 40.7
PGR102G1996 Punica granatum HOM05D005410 ORTHO05D007394 3.7e-53 212.6 259 40.2
Oeu023977.1 Olea europaea HOM05D005410 ORTHO05D007394 4.8e-53 212.2 256 41.0
FAN25G1403 Fragaria x ananassa HOM05D005410 ORTHO05D007394 8.2e-53 211.5 258 41.1
SalBow3G3111 Salvia bowleyana HOM05D005410 ORTHO05D007394 8.2e-53 211.5 259 40.5
Gohir.A04G090700 Gossypium hirsutum HOM05D005410 ORTHO05D007394 1.8e-52 210.3 256 41.0
CAN.G1834.14 Capsicum annuum HOM05D005410 ORTHO05D007394 2.4e-52 209.9 262 41.6
Oeu023974.1 Olea europaea HOM05D005410 ORTHO05D007394 2.4e-52 209.9 256 40.6
PGSC0003DMG400032122 Solanum tuberosum HOM05D005410 ORTHO05D007394 2.4e-52 209.9 258 41.1
SGA_v2.0_scaffold3G01679 Striga asiatica HOM05D005410 ORTHO05D007394 2.4e-52 209.9 258 39.5
Gohir.D04G130700 Gossypium hirsutum HOM05D005410 ORTHO05D007394 3.1e-52 209.5 256 41.0
Gorai.012G114400 Gossypium raimondii HOM05D005410 ORTHO05D007394 3.1e-52 209.5 256 41.0
Atru.chr3.2102 Acer truncatum HOM05D005410 ORTHO05D007394 4.1e-52 209.1 257 40.5
Atru.chr3.2395 Acer truncatum HOM05D005410 ORTHO05D007394 4.1e-52 209.1 257 40.5
Cpa.g.sc119.36 Carica papaya HOM05D005410 ORTHO05D007394 4.1e-52 209.1 258 40.7
Lsat_1_v5_gn_6_55740 Lactuca sativa HOM05D005410 ORTHO05D007394 4.1e-52 209.1 258 41.1
RcHm_v2.0_Chr5g0083861 Rosa chinensis HOM05D005410 ORTHO05D007394 4.1e-52 209.1 258 40.3
ATR0697G079 Amborella trichopoda HOM05D005410 ORTHO05D007394 5.3e-52 208.8 256 41.4
Aqoxy1G00490 Aquilegia oxysepala HOM05D005410 ORTHO05D007394 5.3e-52 208.8 256 40.6
MSTRG.12800 Avicennia marina HOM05D005410 ORTHO05D007394 5.3e-52 208.8 258 39.5
COL.COLO4_07519 Corchorus olitorius HOM05D005410 ORTHO05D007394 5.3e-52 208.8 258 40.7
FAN16G2022 Fragaria x ananassa HOM05D005410 ORTHO05D007394 5.3e-52 208.8 258 40.7
Sopen01g001540 Solanum pennellii HOM05D005410 ORTHO05D007394 5.3e-52 208.8 258 41.5
Migut.N00542 Erythranthe guttata HOM05D005410 ORTHO05D007394 6.9e-52 208.4 258 41.1
MD03G1003100 Malus domestica HOM05D005410 ORTHO05D007394 6.9e-52 208.4 255 40.0
Nitab4.5_0000551g0050 Nicotiana tabacum HOM05D005410 ORTHO05D007394 6.9e-52 208.4 258 41.1
Pp3c19_15590 Physcomitrium patens HOM05D005410 ORTHO05D007394 6.9e-52 208.4 262 41.2
Sp1g41090 Schrenkiella parvula HOM05D005410 ORTHO05D007394 6.9e-52 208.4 259 40.5
Aa31LG10G770 Aethionema arabicum HOM05D005410 ORTHO05D007394 1.2e-51 207.6 258 39.9
CARHR045150 Cardamine hirsuta HOM05D005410 ORTHO05D007394 1.2e-51 207.6 258 39.1
SMO329G0030 Selaginella moellendorffii HOM05D005410 ORTHO05D007394 1.2e-51 207.6 257 41.2
SEGI_35670 Sequoiadendron giganteum HOM05D005410 ORTHO05D007394 1.2e-51 207.6 254 40.9
Sabra03G0165200 Salix brachista HOM05D005410 ORTHO05D007394 1.5e-51 207.2 259 39.4
CSS0020515 Camellia sinensis var. sinensis HOM05D005410 ORTHO05D007394 2.0e-51 206.8 254 40.6
Lj1A521T33 Lonicera japonica HOM05D005410 ORTHO05D007394 2.0e-51 206.8 253 39.9
Lj1A522T64 Lonicera japonica HOM05D005410 ORTHO05D007394 2.0e-51 206.8 253 39.9
Manes.15G110100 Manihot esculenta HOM05D005410 ORTHO05D007394 2.0e-51 206.8 255 39.6
Zm00001eb300990 Zea mays HOM05D005410 ORTHO05D007394 2.0e-51 206.8 257 41.2
SMO238G0020 Selaginella moellendorffii HOM05D005410 ORTHO05D007394 2.6e-51 206.5 257 40.9
CDE10G1105 Ceratophyllum demersum HOM05D005410 ORTHO05D007394 3.4e-51 206.1 256 41.0
AUR62032839 Chenopodium quinoa HOM05D005410 ORTHO05D007394 3.4e-51 206.1 251 39.8
DCAR_023818 Daucus carota HOM05D005410 ORTHO05D007394 3.4e-51 206.1 254 40.6
HPP92_001905 Vanilla planifolia HOM05D005410 ORTHO05D007394 3.4e-51 206.1 258 40.7
BcaB02g10821 Brassica carinata HOM05D005410 ORTHO05D007394 4.5e-51 205.7 259 39.8
Nitab4.5_0006195g0040 Nicotiana tabacum HOM05D005410 ORTHO05D007394 4.5e-51 205.7 258 40.3
Lalb_Chr12g0204581 Lupinus albus HOM05D005410 ORTHO05D007394 5.9e-51 205.3 258 39.9
Hund13622 Selenicereus undatus HOM05D005410 ORTHO05D007394 5.9e-51 205.3 255 40.0
THA.LOC104810318 Tarenaya hassleriana HOM05D005410 ORTHO05D007394 5.9e-51 205.3 255 40.4
vmacro17045 Vaccinium macrocarpon HOM05D005410 ORTHO05D007394 5.9e-51 205.3 262 38.9
AL1G63500 Arabidopsis lyrata HOM05D005410 ORTHO05D007394 7.6e-51 204.9 258 39.1
Duzib168G1987 Durio zibethinus HOM05D005410 ORTHO05D007394 7.6e-51 204.9 256 40.2
Thhalv10011629m.g Eutrema salsugineum HOM05D005410 ORTHO05D007394 7.6e-51 204.9 259 39.8
BcaC08g44199 Brassica carinata HOM05D005410 ORTHO05D007394 1.0e-50 204.5 259 39.8
A05p17460 Brassica napus HOM05D005410 ORTHO05D007394 1.0e-50 204.5 259 39.8
C06p16070 Brassica napus HOM05D005410 ORTHO05D007394 1.0e-50 204.5 259 39.8
BolC6t36806H Brassica oleracea HOM05D005410 ORTHO05D007394 1.0e-50 204.5 259 39.8
BraA05t20641Z Brassica rapa HOM05D005410 ORTHO05D007394 1.0e-50 204.5 259 39.8
FvH4_3g45781 Fragaria vesca HOM05D005410 ORTHO05D007394 1.0e-50 204.5 258 39.9
FAN11G0543 Fragaria x ananassa HOM05D005410 ORTHO05D007394 1.0e-50 204.5 258 39.9
FAN11G0605 Fragaria x ananassa HOM05D005410 ORTHO05D007394 1.0e-50 204.5 258 39.9
MD11G1002900 Malus domestica HOM05D005410 ORTHO05D007394 1.0e-50 204.5 255 39.6
unitig_0.g1148 Utricularia gibba HOM05D005410 ORTHO05D007394 1.0e-50 204.5 259 40.9
Thecc.09G203200 Theobroma cacao HOM05D005410 ORTHO05D007394 1.3e-50 204.1 256 39.1
AT1G55480 Arabidopsis thaliana HOM05D005410 ORTHO05D007394 1.7e-50 203.8 258 38.8
ECA233G0964 Erigeron canadensis HOM05D005410 ORTHO05D007394 2.2e-50 203.4 258 39.1
Medtr8g088420 Medicago truncatula HOM05D005410 ORTHO05D007394 2.9e-50 203.0 259 39.8
arahy.Tifrunner.gnm1.ann1.63K8WX Arachis hypogaea HOM05D005410 ORTHO05D007394 3.8e-50 202.6 255 40.0
Carub.0001s4397 Capsella rubella HOM05D005410 ORTHO05D007394 3.8e-50 202.6 258 38.4
arahy.Tifrunner.gnm1.ann1.GYZC8Z Arachis hypogaea HOM05D005410 ORTHO05D007394 5.0e-50 202.2 255 40.0
Eucgr.J01758 Eucalyptus grandis HOM05D005410 ORTHO05D007394 8.4e-50 201.4 253 39.9
Prupe.6G002700 Prunus persica HOM05D005410 ORTHO05D007394 1.1e-49 201.1 255 39.6
CBR_g66797 Chara braunii HOM05D005410 ORTHO05D007394 1.4e-49 200.7 261 40.6
Cc01_g00190 Coffea canephora HOM05D005410 ORTHO05D007394 1.4e-49 200.7 255 39.2
Actinidia16239 Actinidia chinensis HOM05D005410 ORTHO05D007394 1.9e-49 200.3 252 39.7
Sc09g0000010 Simmondsia chinensis HOM05D005410 ORTHO05D007394 1.9e-49 200.3 256 40.6
Ciclev10015873m.g Citrus clementina HOM05D005410 ORTHO05D007394 2.5e-49 199.9 251 39.8
Nn2g15872 Nelumbo nucifera HOM05D005410 ORTHO05D007394 2.5e-49 199.9 254 41.3
Phvul.002G247200 Phaseolus vulgaris HOM05D005410 ORTHO05D007394 4.2e-49 199.1 259 38.6
CiPaw.13G177700 Carya illinoinensis HOM05D005410 ORTHO05D007394 5.5e-49 198.7 255 40.0
CiPaw.14G137400 Carya illinoinensis HOM05D005410 ORTHO05D007394 5.5e-49 198.7 256 39.8
Dinv13479 Davidia involucrata HOM05D005410 ORTHO05D007394 5.5e-49 198.7 249 39.8
Lj4g0005740 Lotus japonicus HOM05D005410 ORTHO05D007394 5.5e-49 198.7 259 39.4
MBI05_g04454_MAGBIO Magnolia biondii HOM05D005410 ORTHO05D007394 7.2e-49 198.4 267 37.8
Oeu060891.1 Olea europaea HOM05D005410 ORTHO05D007394 7.2e-49 198.4 253 39.5
CANSAT11G0129 Cannabis sativa HOM05D005410 ORTHO05D007394 1.2e-48 197.6 255 38.8
Glyma.08G124900 Glycine max HOM05D005410 ORTHO05D007394 1.2e-48 197.6 259 39.0
Sed0021908 Sechium edule HOM05D005410 ORTHO05D007394 1.6e-48 197.2 260 39.6
Potri.003G222200 Populus trichocarpa HOM05D005410 ORTHO05D007394 2.7e-48 196.4 251 37.5
Glyma.05G166800 Glycine max HOM05D005410 ORTHO05D007394 3.5e-48 196.1 257 38.5
Rhsim13G0233300 Rhododendron simsii HOM05D005410 ORTHO05D007394 6.1e-48 195.3 250 38.4
CsaV3_4G017550 Cucumis sativus L. HOM05D005410 ORTHO05D007394 7.9e-48 194.9 256 39.1
PSO339G0242 Papaver somniferum HOM05D005410 ORTHO05D007394 1.3e-47 194.1 255 37.6
PSO384G0864 Papaver somniferum HOM05D005410 ORTHO05D007394 1.3e-47 194.1 255 37.6
TAR369G0462 Trochodendron aralioides HOM05D005410 ORTHO05D007394 2.3e-47 193.4 253 37.9
ClCG02G024420 Citrullus lanatus HOM05D005410 ORTHO05D007394 3.9e-47 192.6 256 38.3
QL01p010651 Quercus lobata HOM05D005410 ORTHO05D007394 3.9e-47 192.6 256 39.1
VMungo0251G1592 Vigna mungo HOM05D005410 ORTHO05D007394 5.1e-47 192.2 256 38.7
Peaxi162Scf00036g00221 Petunia axillaris HOM05D005410 ORTHO05D007394 6.7e-47 191.8 257 37.7
Haze_22935 Corylus avellana HOM05D005410 ORTHO05D007394 2.5e-46 189.9 251 38.2
EL10Ac4g10389 Beta vulgaris HOM05D005410 ORTHO05D007394 3.3e-46 189.5 249 38.2
Os07g0171100 Oryza sativa ssp. japonica HOM05D005410 ORTHO05D007394 1.7e-42 177.2 219 39.7
GSVIVG01025488001 Vitis vinifera HOM05D005410 ORTHO05D007394 3.8e-42 176.0 217 39.2
TAR623G0245 Trochodendron aralioides HOM05D005410 ORTHO05D007394 7.2e-41 171.8 219 39.3
TPR.G6787 Trifolium pratense HOM05D005410 ORTHO05D007394 5.9e-35 152.1 213 37.6
Cfa009554 Carpinus fangiana HOM05D005410 ORTHO05D007394 8.5e-34 148.3 210 37.1
Potri.001G002700 Populus trichocarpa HOM05D005410 ORTHO05D007394 3.6e-32 142.9 251 33.9
arahy.Tifrunner.gnm1.ann1.CQ6EI1 Arachis hypogaea HOM05D005410 ORTHO05D007394 3.3e-30 136.3 256 33.6
Pp3c22_13930 Physcomitrium patens HOM05D005410 ORTHO05D007394 2.3e-23 113.6 256 30.5
Psat7g064320 Pisum sativum HOM05D005410 ORTHO05D007394 2.0e-22 110.5 141 39.0
Ah.06g190610 Amaranthus hybridus HOM05D005410 ORTHO05D007394 2.4e-20 103.6 142 38.0
vmacro04262 Vaccinium macrocarpon HOM05D005410 ORTHO05D007394 5.3e-20 102.4 221 28.5
AagrBONN_evm.TU.Sc2ySwM_117.774 Anthoceros agrestis HOM05D005410 ORTHO05D007394 1.6e-19 100.9 126 42.1
vmacro23200 Vaccinium macrocarpon HOM05D005410 ORTHO05D007394 5.9e-19 99.0 175 30.3
Solyc01g005520.4 Solanum lycopersicum HOM05D005410 ORTHO05D007394 7.7e-19 98.6 118 40.7
Ciclev10018072m.g Citrus clementina HOM05D005410 ORTHO05D007394 2.9e-18 96.7 111 42.3
Hma1.2p1_0256F.1_g103360 Hydrangea macrophylla HOM05D005410 ORTHO05D007394 2.9e-18 96.7 136 34.6
MELO3C014728.2 Cucumis melo HOM05D005410 ORTHO05D007394 1.5e-17 94.4 118 39.0
EL10Ac8g20065 Beta vulgaris HOM05D005410 ORTHO05D007394 1.6e-16 90.9 130 36.2
CDE10G0059 Ceratophyllum demersum HOM05D005410 ORTHO05D007394 6.8e-15 85.5 104 40.4
Psat7g062240 Pisum sativum HOM05D005410 ORTHO05D007394 8.3e-13 78.6 185 28.6
MCO05G137 Micromonas commoda HOM05D005410 ORTHO05D025019 9.1e-12 75.1 130 30.8
Psat7g064400 Pisum sativum HOM05D005410 ORTHO05D007394 1.5e-09 67.8 102 37.3
Cfa009551 Carpinus fangiana HOM05D005410 ORTHO05D007394 1.9e-09 67.4 61 49.2
Cre10.g439350 Chlamydomonas reinhardtii HOM05D005410 ORTHO05D025019 2.1e-08 63.9 129 33.3
BcaB04g16956 Brassica carinata HOM05D005410 ORTHO05D009181 3.4e-06 56.6 55 38.2
Mapoly0060s0015 Marchantia polymorpha HOM05D005823 ORTHO05D007536 3.4e-06 56.6 87 29.9
PRCOL_00006506 Prasinoderma coloniale HOM05D005410 ORTHO05D025019 7.5e-06 55.5 114 28.9
AagrBONN_evm.TU.Sc2ySwM_228.3021 Anthoceros agrestis HOM05D005823 ORTHO05D007536 9.8e-06 55.1 87 31.0


User provided reference genes

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