Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PRCOL_00004489 Prasinoderma coloniale HOM05D003810 ORTHO05D004416 0.0e+00 1167.5 642 100.0
Mapoly0009s0093 Marchantia polymorpha HOM05D003810 ORTHO05D004416 4.4e-28 130.6 647 26.0
Pp3c26_14480 Physcomitrium patens HOM05D003810 ORTHO05D004416 2.3e-24 118.2 657 26.6
MBI15_g00877_MAGBIO Magnolia biondii HOM05D003810 ORTHO05D004416 3.1e-21 107.8 594 26.4
Eucgr.J01409 Eucalyptus grandis HOM05D003810 ORTHO05D004416 4.0e-21 107.5 551 25.8
AagrBONN_evm.TU.Sc2ySwM_117.3105 Anthoceros agrestis HOM05D003810 ORTHO05D004416 1.5e-20 105.5 582 25.4
Nitab4.5_0000611g0250 Nicotiana tabacum HOM05D003810 ORTHO05D004416 1.3e-19 102.4 571 25.0
Nitab4.5_0001622g0070 Nicotiana tabacum HOM05D003810 ORTHO05D004416 1.3e-19 102.4 646 24.9
Actinidia00838 Actinidia chinensis HOM05D003810 ORTHO05D004416 1.7e-19 102.1 588 26.2
CSS0024914 Camellia sinensis var. sinensis HOM05D003810 ORTHO05D004416 2.9e-19 101.3 568 24.3
Rhsim04G0009500 Rhododendron simsii HOM05D003810 ORTHO05D004416 4.9e-19 100.5 651 24.1
PGR042G2745 Punica granatum HOM05D003810 ORTHO05D004416 6.4e-19 100.1 535 24.3
Os08g0338200 Oryza sativa ssp. japonica HOM05D003810 ORTHO05D004416 2.4e-18 98.2 587 23.7
HanXRQChr05g0160211 Helianthus annuus HOM05D003810 ORTHO05D004416 3.2e-18 97.8 662 25.1
Aqoxy3G00950 Aquilegia oxysepala HOM05D003810 ORTHO05D004416 9.2e-18 96.3 570 24.0
Ah.01g013210 Amaranthus hybridus HOM05D003810 ORTHO05D004416 1.2e-17 95.9 608 24.5
Thecc.09G267400 Theobroma cacao HOM05D003810 ORTHO05D004416 1.6e-17 95.5 532 24.8
GSVIVG01014785001 Vitis vinifera HOM05D003810 ORTHO05D004416 2.7e-17 94.7 603 22.9
Gorai.001G127200 Gossypium raimondii HOM05D003810 ORTHO05D004416 4.6e-17 94.0 530 24.5
Peaxi162Scf00212g00616 Petunia axillaris HOM05D003810 ORTHO05D004416 6.0e-17 93.6 567 24.7
Gohir.D07G118250 Gossypium hirsutum HOM05D003810 ORTHO05D004416 7.8e-17 93.2 522 24.3
Manes.02G224100 Manihot esculenta HOM05D003810 ORTHO05D004416 7.8e-17 93.2 593 23.3
Sed0019869 Sechium edule HOM05D003810 ORTHO05D004416 7.8e-17 93.2 547 24.5
Solyc10g005900.3 Solanum lycopersicum HOM05D003810 ORTHO05D004416 7.8e-17 93.2 652 24.2
ATR0751G036 Amborella trichopoda HOM05D003810 ORTHO05D004416 1.0e-16 92.8 663 24.4
CAN.G492.44 Capsicum annuum HOM05D003810 ORTHO05D004416 1.0e-16 92.8 652 23.8
Sopen10g001850 Solanum pennellii HOM05D003810 ORTHO05D004416 1.0e-16 92.8 652 24.2
Aqoxy2G00893 Aquilegia oxysepala HOM05D003810 ORTHO05D004416 1.3e-16 92.4 652 23.5
Sc14g0003560 Simmondsia chinensis HOM05D003810 ORTHO05D004416 1.3e-16 92.4 654 24.3
Migut.H01729 Erythranthe guttata HOM05D003810 ORTHO05D004416 1.7e-16 92.0 636 24.4
PSO063G0853 Papaver somniferum HOM05D003810 ORTHO05D004416 3.9e-16 90.9 573 25.1
PSO782G5597 Papaver somniferum HOM05D003810 ORTHO05D004416 6.6e-16 90.1 573 25.1
MSTRG.13036 Avicennia marina HOM05D003810 ORTHO05D004416 8.6e-16 89.7 571 22.9
AUR62017624 Chenopodium quinoa HOM05D003810 ORTHO05D004416 8.6e-16 89.7 649 24.2
Zm00001eb172700 Zea mays HOM05D003810 ORTHO05D004416 8.6e-16 89.7 400 27.5
Lsat_1_v5_gn_1_66020 Lactuca sativa HOM05D003810 ORTHO05D004416 1.1e-15 89.4 582 22.9
BcaC03g15064 Brassica carinata HOM05D003810 ORTHO05D004416 1.5e-15 89.0 575 23.3
C02p26210 Brassica napus HOM05D003810 ORTHO05D004416 1.5e-15 89.0 575 23.3
BolC2t08687H Brassica oleracea HOM05D003810 ORTHO05D004416 1.5e-15 89.0 575 23.3
Lsat_1_v5_gn_9_33460 Lactuca sativa HOM05D003810 ORTHO05D004416 2.5e-15 88.2 524 23.5
BcaB05g24435 Brassica carinata HOM05D003810 ORTHO05D004416 4.3e-15 87.4 560 23.2
BraA02t06637Z Brassica rapa HOM05D003810 ORTHO05D004416 4.3e-15 87.4 541 24.0
A02p15760 Brassica napus HOM05D003810 ORTHO05D004416 5.6e-15 87.0 558 24.0
Aa31LG10G490 Aethionema arabicum HOM05D003810 ORTHO05D004416 7.3e-15 86.7 539 23.4
COL.COLO4_25217 Corchorus olitorius HOM05D003810 ORTHO05D004416 7.3e-15 86.7 554 24.0
Sp5g24310 Schrenkiella parvula HOM05D003810 ORTHO05D004416 7.3e-15 86.7 541 23.8
Cpa.g.sc181.12 Carica papaya HOM05D003810 ORTHO05D004416 9.5e-15 86.3 527 25.0
MELO3C020474.2 Cucumis melo HOM05D003810 ORTHO05D004416 9.5e-15 86.3 639 23.2
Duzib150G1314 Durio zibethinus HOM05D003810 ORTHO05D004416 9.5e-15 86.3 532 23.3
HPP92_028601 Vanilla planifolia HOM05D003810 ORTHO05D004416 9.5e-15 86.3 607 23.1
Ciclev10007802m.g Citrus clementina HOM05D003810 ORTHO05D004416 1.6e-14 85.5 525 23.6
Aqoxy7G03331 Aquilegia oxysepala HOM05D003810 ORTHO05D004416 2.1e-14 85.1 519 24.1
Thhalv10011333m.g Eutrema salsugineum HOM05D003810 ORTHO05D004416 2.8e-14 84.7 541 22.7
CARHR045410 Cardamine hirsuta HOM05D003810 ORTHO05D004416 3.6e-14 84.3 551 24.0
Hma1.2p1_0193F.1_g084130 Hydrangea macrophylla HOM05D003810 ORTHO05D004416 3.6e-14 84.3 594 23.9
Sabra07G0088100 Salix brachista HOM05D003810 ORTHO05D004416 3.6e-14 84.3 524 22.5
FAN04G0096 Fragaria x ananassa HOM05D003810 ORTHO05D004416 4.7e-14 84.0 526 23.2
Cfa016940 Carpinus fangiana HOM05D003810 ORTHO05D004416 6.2e-14 83.6 658 24.2
Dinv40895 Davidia involucrata HOM05D003810 ORTHO05D004416 6.2e-14 83.6 628 24.7
Atru.chr2.3847 Acer truncatum HOM05D003810 ORTHO05D004416 8.1e-14 83.2 524 23.1
AL1G63840 Arabidopsis lyrata HOM05D003810 ORTHO05D004416 8.1e-14 83.2 524 23.5
RcHm_v2.0_Chr7g0221221 Rosa chinensis HOM05D003810 ORTHO05D004416 8.1e-14 83.2 522 22.0
Atru.chr12.1053 Acer truncatum HOM05D003810 ORTHO05D004416 1.1e-13 82.8 522 23.8
CANSAT11G0157 Cannabis sativa HOM05D003810 ORTHO05D004416 1.1e-13 82.8 541 24.0
Carub.0001s4426 Capsella rubella HOM05D003810 ORTHO05D004416 1.4e-13 82.4 544 23.2
CsaV3_4G027560 Cucumis sativus L. HOM05D003810 ORTHO05D004416 1.4e-13 82.4 639 23.2
AT1G55750 Arabidopsis thaliana HOM05D003810 ORTHO05D004416 1.8e-13 82.0 462 24.5
EL10Ac9g22878 Beta vulgaris HOM05D003810 ORTHO05D004416 1.8e-13 82.0 648 22.5
CDE04G2581 Ceratophyllum demersum HOM05D003810 ORTHO05D004416 2.3e-13 81.6 501 25.3
Lj5g0018758 Lotus japonicus HOM05D003810 ORTHO05D004416 3.1e-13 81.3 535 24.5
Cc00_g20590 Coffea canephora HOM05D003810 ORTHO05D004416 4.0e-13 80.9 631 23.0
AL5G43720 Arabidopsis lyrata HOM05D003810 ORTHO05D004416 5.2e-13 80.5 525 23.0
Psat6g170400 Pisum sativum HOM05D003810 ORTHO05D004416 5.2e-13 80.5 524 24.2
unitig_61.g26129 Utricularia gibba HOM05D003810 ORTHO05D004416 5.2e-13 80.5 537 22.9
Phvul.007G134900 Phaseolus vulgaris HOM05D003810 ORTHO05D004416 6.8e-13 80.1 597 24.3
Medtr1g090110 Medicago truncatula HOM05D003810 ORTHO05D004416 8.9e-13 79.7 542 24.2
TPR.G13386 Trifolium pratense HOM05D003810 ORTHO05D004416 8.9e-13 79.7 524 23.1
vmacro22299 Vaccinium macrocarpon HOM05D003810 ORTHO05D004416 1.5e-12 79.0 653 23.0
Potri.007G107400 Populus trichocarpa HOM05D003810 ORTHO05D004416 2.0e-12 78.6 528 23.9
FvH4_5g28910 Fragaria vesca HOM05D003810 ORTHO05D004416 2.6e-12 78.2 461 23.6
THA.LOC104815683 Tarenaya hassleriana HOM05D003810 ORTHO05D004416 2.6e-12 78.2 644 23.0
CBR_g28523 Chara braunii HOM05D000019 ORTHO05D000002 3.4e-12 77.8 297 31.0
FAN08G2973 Fragaria x ananassa HOM05D003810 ORTHO05D004416 7.5e-12 76.6 581 24.3
AT3G61420 Arabidopsis thaliana HOM05D003810 ORTHO05D004416 9.9e-12 76.3 532 22.6
CiPaw.11G208700 Carya illinoinensis HOM05D003810 ORTHO05D004416 9.9e-12 76.3 640 22.8
Cre10.g466550 Chlamydomonas reinhardtii HOM05D003810 ORTHO05D004416 9.9e-12 76.3 252 30.6
ECA246G2898 Erigeron canadensis HOM05D003810 ORTHO05D004416 9.9e-12 76.3 645 23.4
FAN02G2818 Fragaria x ananassa HOM05D003810 ORTHO05D004416 1.7e-11 75.5 132 36.4
Medtr6g071555 Medicago truncatula HOM05D003810 ORTHO05D004416 1.7e-11 75.5 536 22.9
QL08p001596 Quercus lobata HOM05D003810 ORTHO05D004416 1.7e-11 75.5 531 22.8
VMungo0720G2836 Vigna mungo HOM05D003810 ORTHO05D004416 2.9e-11 74.7 532 23.3
FAN05G0299 Fragaria x ananassa HOM05D003810 ORTHO05D010162 6.4e-11 73.6 132 32.6
Gohir.A07G114448 Gossypium hirsutum HOM05D003810 ORTHO05D004416 6.4e-11 73.6 279 29.0
MD15G1441400 Malus domestica HOM05D003810 ORTHO05D004416 6.4e-11 73.6 530 23.6
vmacro09609 Vaccinium macrocarpon HOM05D003810 ORTHO05D004416 6.4e-11 73.6 346 27.7
Glyma.10G193000 Glycine max HOM05D003810 ORTHO05D004416 8.3e-11 73.2 265 29.1
QL04p000617 Quercus lobata HOM05D003810 ORTHO05D004416 1.1e-10 72.8 132 36.4
BcaB07g33855 Brassica carinata HOM05D003810 ORTHO05D004416 1.9e-10 72.0 132 40.2
Oeu062684.4 Olea europaea HOM05D003810 ORTHO05D004416 2.4e-10 71.6 722 22.0
SGA_v2.0_scaffold146G36126 Striga asiatica HOM05D003810 ORTHO05D004416 2.4e-10 71.6 651 23.2
Glyma.20G197500 Glycine max HOM05D003810 ORTHO05D004416 3.2e-10 71.2 265 28.7
arahy.Tifrunner.gnm1.ann1.KKS8QY Arachis hypogaea HOM05D003810 ORTHO05D004416 7.1e-10 70.1 524 24.6
Nn2g14662 Nelumbo nucifera HOM05D003810 ORTHO05D004416 7.1e-10 70.1 399 25.1
TAR627G1185 Trochodendron aralioides HOM05D003810 ORTHO05D004416 7.1e-10 70.1 415 25.8
DCAR_017597 Daucus carota HOM05D003810 ORTHO05D004416 1.2e-09 69.3 346 26.3
Prupe.1G583500 Prunus persica HOM05D003810 ORTHO05D004416 1.6e-09 68.9 292 27.1
Ca_10408_v3 Cicer arietinum L. HOM05D003810 ORTHO05D004416 2.1e-09 68.6 553 23.0
arahy.Tifrunner.gnm1.ann1.60T2A8 Arachis hypogaea HOM05D003810 ORTHO05D004416 4.6e-09 67.4 524 23.5
FAN18G3759 Fragaria x ananassa HOM05D003810 ORTHO05D004416 6.0e-09 67.0 438 22.4
Prupe.5G046900 Prunus persica HOM05D003810 ORTHO05D004416 6.0e-09 67.0 239 27.6
TAR629G3163 Trochodendron aralioides HOM05D003810 ORTHO05D004416 7.8e-09 66.6 271 28.8
Lj3C711T10 Lonicera japonica HOM05D003810 ORTHO05D004416 1.0e-08 66.2 528 24.8
Lj1A897G41 Lonicera japonica HOM05D003810 ORTHO05D004416 1.7e-08 65.5 330 25.5
BcaC08g42928 Brassica carinata HOM05D003810 ORTHO05D004416 2.3e-08 65.1 135 36.3
FvH4_6g25000 Fragaria vesca HOM05D003810 ORTHO05D004416 2.3e-08 65.1 288 23.6
TWI23G0485 Tripterygium wilfordii HOM05D003810 ORTHO05D004416 3.0e-08 64.7 556 22.1
SHI21694 Sapria himalayana HOM05D003810 ORTHO05D004416 5.1e-08 63.9 119 31.9
SGA_v2.0_scaffold42G15939 Striga asiatica HOM05D003810 ORTHO05D004416 5.1e-08 63.9 462 22.5
AUR62015172 Chenopodium quinoa HOM05D003810 ORTHO05D004416 6.6e-08 63.5 413 25.9
FAN14G4445 Fragaria x ananassa HOM05D003810 ORTHO05D004416 8.6e-08 63.2 288 23.3
Haze_09895 Corylus avellana HOM05D003810 ORTHO05D004416 1.5e-07 62.4 665 23.2
CAN.G306.3 Capsicum annuum HOM05D003810 ORTHO05D004416 1.9e-07 62.0 144 33.3
Prupe.5G213500 Prunus persica HOM05D003810 ORTHO05D004416 1.9e-07 62.0 315 25.4
CAN.G306.2 Capsicum annuum HOM05D003810 ORTHO05D004416 2.5e-07 61.6 144 34.0
Dinv10375 Davidia involucrata HOM05D003810 ORTHO05D004416 3.3e-07 61.2 526 21.3
Potri.005G061432 Populus trichocarpa HOM05D003810 ORTHO05D004416 3.3e-07 61.2 343 25.9
Duzib168G0397 Durio zibethinus HOM05D003810 ORTHO05D004416 7.3e-07 60.1 465 23.7
MCO14G434 Micromonas commoda HOM05D003810 ORTHO05D004416 1.2e-06 59.3 395 27.1
MD08G1246300 Malus domestica HOM05D003810 ORTHO05D004416 8.1e-06 56.6 268 25.7


User provided reference genes

Program Settings