Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PRCOL_00003855 Prasinoderma coloniale HOM05D003395 ORTHO05D004087 0.0e+00 1570.1 897 100.0
CSS0000776 Camellia sinensis var. sinensis HOM05D003395 ORTHO05D004087 3.1e-48 198.0 881 27.5
HanXRQChr04g0125091 Helianthus annuus HOM05D003395 ORTHO05D004087 7.0e-48 196.8 886 27.1
vmacro09059 Vaccinium macrocarpon HOM05D003395 ORTHO05D004087 7.0e-48 196.8 877 28.2
Sc19g0006620 Simmondsia chinensis HOM05D003395 ORTHO05D004087 9.1e-48 196.4 915 27.7
Ciclev10004294m.g Citrus clementina HOM05D003395 ORTHO05D004087 1.0e-46 193.0 889 27.2
DCAR_020506 Daucus carota HOM05D003395 ORTHO05D004087 1.3e-46 192.6 888 27.1
CANSAT80G2433 Cannabis sativa HOM05D003395 ORTHO05D004087 2.2e-46 191.8 893 27.0
Lj1A1126G58 Lonicera japonica HOM05D003395 ORTHO05D004087 2.9e-46 191.4 875 26.7
Lj1A1128G63 Lonicera japonica HOM05D003395 ORTHO05D004087 2.9e-46 191.4 875 26.7
Mapoly0069s0022 Marchantia polymorpha HOM05D003395 ORTHO05D004087 2.9e-46 191.4 887 27.5
ECA236G0559 Erigeron canadensis HOM05D003395 ORTHO05D004087 1.9e-45 188.7 884 26.9
Lsat_1_v5_gn_8_82001 Lactuca sativa HOM05D003395 ORTHO05D004087 3.2e-45 188.0 885 26.8
SEGI_19146 Sequoiadendron giganteum HOM05D003395 ORTHO05D004087 4.2e-45 187.6 881 26.7
Peaxi162Scf00130g00723 Petunia axillaris HOM05D003395 ORTHO05D004087 5.5e-45 187.2 914 26.9
Nitab4.5_0006870g0040 Nicotiana tabacum HOM05D003395 ORTHO05D004087 7.2e-45 186.8 895 27.6
Manes.11G065000 Manihot esculenta HOM05D003395 ORTHO05D004087 1.2e-44 186.0 890 28.1
PSO210G1603 Papaver somniferum HOM05D003395 ORTHO05D004087 1.2e-44 186.0 897 26.9
GSVIVG01033240001 Vitis vinifera HOM05D003395 ORTHO05D004087 1.2e-44 186.0 883 27.4
Gorai.007G357300 Gossypium raimondii HOM05D003395 ORTHO05D004087 2.1e-44 185.3 883 26.8
Gohir.D11G326700 Gossypium hirsutum HOM05D003395 ORTHO05D004087 2.7e-44 184.9 890 26.9
Nitab4.5_0000826g0280 Nicotiana tabacum HOM05D003395 ORTHO05D004087 2.7e-44 184.9 894 27.5
ATR0320G031 Amborella trichopoda HOM05D003395 ORTHO05D004087 6.1e-44 183.7 900 27.3
TWI74G0608 Tripterygium wilfordii HOM05D003395 ORTHO05D004087 6.1e-44 183.7 892 27.5
Atru.chr1.1149 Acer truncatum HOM05D003395 ORTHO05D004087 8.0e-44 183.3 889 26.9
Potri.012G034800 Populus trichocarpa HOM05D003395 ORTHO05D004087 8.0e-44 183.3 895 28.0
Glyma.15G010000 Glycine max HOM05D003395 ORTHO05D004087 1.4e-43 182.6 883 27.6
Nn7g36372 Nelumbo nucifera HOM05D003395 ORTHO05D004087 1.4e-43 182.6 888 26.9
Phvul.005G175500 Phaseolus vulgaris HOM05D003395 ORTHO05D004087 1.4e-43 182.6 883 27.2
COL.COLO4_22300 Corchorus olitorius HOM05D003395 ORTHO05D004087 1.8e-43 182.2 893 26.9
MELO3C009808.2 Cucumis melo HOM05D003395 ORTHO05D004087 1.8e-43 182.2 886 26.3
PSO210G2967 Papaver somniferum HOM05D003395 ORTHO05D004087 3.0e-43 181.4 891 26.9
Sopen04g008350 Solanum pennellii HOM05D003395 ORTHO05D004087 4.0e-43 181.0 892 27.1
SalBow6G3234 Salvia bowleyana HOM05D003395 ORTHO05D004087 5.2e-43 180.6 890 26.7
CsaV3_3G040740 Cucumis sativus L. HOM05D003395 ORTHO05D004087 8.8e-43 179.9 882 26.0
Gohir.A11G309900 Gossypium hirsutum HOM05D003395 ORTHO05D004087 8.8e-43 179.9 657 28.9
Solyc04g016240.3 Solanum lycopersicum HOM05D003395 ORTHO05D004087 8.8e-43 179.9 892 27.0
Thecc.05G151200 Theobroma cacao HOM05D003395 ORTHO05D004087 8.8e-43 179.9 893 26.5
VMungo1080G0039 Vigna mungo HOM05D003395 ORTHO05D004087 8.8e-43 179.9 883 27.3
Glyma.13G363900 Glycine max HOM05D003395 ORTHO05D004087 1.5e-42 179.1 881 26.9
MD12G1080600 Malus domestica HOM05D003395 ORTHO05D004087 1.5e-42 179.1 882 27.4
QL07p003024 Quercus lobata HOM05D003395 ORTHO05D004087 1.5e-42 179.1 889 26.5
CAN.G676.13 Capsicum annuum HOM05D003395 ORTHO05D004087 2.0e-42 178.7 904 26.2
Medtr2g103370 Medicago truncatula HOM05D003395 ORTHO05D004087 2.0e-42 178.7 879 26.7
BcaC02g07302 Brassica carinata HOM05D003395 ORTHO05D004087 2.6e-42 178.3 890 26.0
BolC4t28411H Brassica oleracea HOM05D003395 ORTHO05D004087 2.6e-42 178.3 890 26.0
Rhsim04G0105700 Rhododendron simsii HOM05D003395 ORTHO05D004087 2.6e-42 178.3 905 27.8
Aqoxy2G00226 Aquilegia oxysepala HOM05D003395 ORTHO05D004087 3.4e-42 177.9 904 25.8
TAR633G2151 Trochodendron aralioides HOM05D003395 ORTHO05D004087 3.4e-42 177.9 906 26.4
A04p31720 Brassica napus HOM05D003395 ORTHO05D004087 5.7e-42 177.2 889 26.2
AUR62026086 Chenopodium quinoa HOM05D003395 ORTHO05D004087 5.7e-42 177.2 878 26.4
TPR.G37242 Trifolium pratense HOM05D003395 ORTHO05D004087 5.7e-42 177.2 879 26.7
C04p69140 Brassica napus HOM05D003395 ORTHO05D004087 7.5e-42 176.8 880 26.0
BraA04t18629Z Brassica rapa HOM05D003395 ORTHO05D004087 7.5e-42 176.8 880 26.1
Sabra12G0023800 Salix brachista HOM05D003395 ORTHO05D004087 7.5e-42 176.8 893 27.3
Eucgr.K01721 Eucalyptus grandis HOM05D003395 ORTHO05D004087 1.3e-41 176.0 735 27.6
FAN05G3635 Fragaria x ananassa HOM05D003395 ORTHO05D004087 2.2e-41 175.3 891 26.7
FAN02G0096 Fragaria x ananassa HOM05D003395 ORTHO05D004087 3.7e-41 174.5 890 26.6
THA.LOC104817509 Tarenaya hassleriana HOM05D003395 ORTHO05D004087 4.9e-41 174.1 879 26.3
Haze_19811 Corylus avellana HOM05D003395 ORTHO05D004087 6.3e-41 173.7 867 27.1
Psat5g301400 Pisum sativum HOM05D003395 ORTHO05D004087 8.3e-41 173.3 883 26.5
MSTRG.26130 Avicennia marina HOM05D003395 ORTHO05D004087 1.1e-40 172.9 904 26.3
Haze_19814 Corylus avellana HOM05D003395 ORTHO05D004087 1.1e-40 172.9 867 27.0
SMO203G0013 Selaginella moellendorffii HOM05D003395 ORTHO05D004087 1.1e-40 172.9 896 26.6
CiPaw.09G039800 Carya illinoinensis HOM05D003395 ORTHO05D004087 1.4e-40 172.6 882 26.4
FvH4_6g24390 Fragaria vesca HOM05D003395 ORTHO05D004087 1.4e-40 172.6 892 26.7
Migut.K00101 Erythranthe guttata HOM05D003395 ORTHO05D004087 2.4e-40 171.8 888 26.6
Potri.015G026200 Populus trichocarpa HOM05D003395 ORTHO05D004087 2.4e-40 171.8 888 26.9
Dinv39652 Davidia involucrata HOM05D003395 ORTHO05D004087 3.1e-40 171.4 885 26.4
MBI13_g36815_MAGBIO Magnolia biondii HOM05D003395 ORTHO05D004087 4.1e-40 171.0 875 26.9
arahy.Tifrunner.gnm1.ann1.13YWQX Arachis hypogaea HOM05D003395 ORTHO05D004087 7.0e-40 170.2 892 27.6
SGA_v2.0_scaffold94G28494 Striga asiatica HOM05D003395 ORTHO05D004087 7.0e-40 170.2 647 28.6
PGSC0003DMG400012709 Solanum tuberosum HOM05D003395 ORTHO05D004087 9.2e-40 169.9 887 27.2
MD14G1076700 Malus domestica HOM05D003395 ORTHO05D004087 1.2e-39 169.5 881 27.0
Sp4g23860 Schrenkiella parvula HOM05D003395 ORTHO05D004087 1.2e-39 169.5 882 26.1
Lj3g0013293 Lotus japonicus HOM05D003395 ORTHO05D004087 1.6e-39 169.1 872 26.3
Os03g0349000 Oryza sativa ssp. japonica HOM05D003395 ORTHO05D004087 2.0e-39 168.7 882 26.5
arahy.Tifrunner.gnm1.ann1.C8DH2G Arachis hypogaea HOM05D003395 ORTHO05D004087 4.5e-39 167.5 892 27.1
C08p32740 Brassica napus HOM05D003395 ORTHO05D004087 4.5e-39 167.5 879 26.3
BolC8t50885H Brassica oleracea HOM05D003395 ORTHO05D004087 4.5e-39 167.5 879 26.3
Carub.0005s2420 Capsella rubella HOM05D003395 ORTHO05D004087 5.9e-39 167.2 882 25.4
Ca_01074_v3 Cicer arietinum L. HOM05D003395 ORTHO05D004087 5.9e-39 167.2 879 26.2
AL5G38890 Arabidopsis lyrata HOM05D003395 ORTHO05D004087 7.7e-39 166.8 896 25.6
Haze_09905 Corylus avellana HOM05D003395 ORTHO05D004087 7.7e-39 166.8 883 25.7
Sed0021456 Sechium edule HOM05D003395 ORTHO05D004087 1.0e-38 166.4 878 25.1
EL10Ac3g07130 Beta vulgaris HOM05D003395 ORTHO05D004087 1.3e-38 166.0 881 26.2
A09p50250 Brassica napus HOM05D003395 ORTHO05D004087 1.3e-38 166.0 893 26.0
BraA09t40475Z Brassica rapa HOM05D003395 ORTHO05D004087 1.3e-38 166.0 893 26.0
Carub.0004s2387 Capsella rubella HOM05D003395 ORTHO05D004087 1.3e-38 166.0 880 25.7
Aa31LG1G23630 Aethionema arabicum HOM05D003395 ORTHO05D004087 2.3e-38 165.2 878 25.3
Oeu008171.1 Olea europaea HOM05D003395 ORTHO05D004087 2.9e-38 164.9 887 25.8
RcHm_v2.0_Chr3g0483381 Rosa chinensis HOM05D003395 ORTHO05D004087 3.8e-38 164.5 891 26.5
CARHR136710 Cardamine hirsuta HOM05D003395 ORTHO05D004087 6.6e-38 163.7 880 25.5
FAN14G3261 Fragaria x ananassa HOM05D003395 ORTHO05D004087 8.6e-38 163.3 892 26.3
AL4G39710 Arabidopsis lyrata HOM05D003395 ORTHO05D004087 1.1e-37 162.9 890 26.6
HPP92_001326 Vanilla planifolia HOM05D003395 ORTHO05D004087 3.3e-37 161.4 867 26.2
Lalb_Chr14g0373701 Lupinus albus HOM05D003395 ORTHO05D004087 5.6e-37 160.6 879 25.4
Lalb_Chr24g0395581 Lupinus albus HOM05D003395 ORTHO05D004087 5.6e-37 160.6 880 26.0
Ah.13g076590 Amaranthus hybridus HOM05D003395 ORTHO05D004087 7.3e-37 160.2 896 25.3
AT2G41620 Arabidopsis thaliana HOM05D003395 ORTHO05D004087 7.3e-37 160.2 881 25.7
Pp3c6_19740 Physcomitrium patens HOM05D003395 ORTHO05D004087 7.3e-37 160.2 886 26.4
Prupe.7G054800 Prunus persica HOM05D003395 ORTHO05D004087 7.3e-37 160.2 737 27.4
Sabra15G0019300 Salix brachista HOM05D003395 ORTHO05D004087 9.5e-37 159.8 888 27.1
Sabra15G0021800 Salix brachista HOM05D003395 ORTHO05D004087 1.2e-36 159.5 888 27.1
Sp5g05250 Schrenkiella parvula HOM05D003395 ORTHO05D004087 2.8e-36 158.3 881 25.8
Thhalv10016231m.g Eutrema salsugineum HOM05D003395 ORTHO05D004087 4.7e-36 157.5 881 25.4
AT3G57350 Arabidopsis thaliana HOM05D003395 ORTHO05D004087 1.4e-35 156.0 886 24.9
Duzib128G1779 Durio zibethinus HOM05D003395 ORTHO05D004087 1.4e-35 156.0 862 25.5
CBR_g4043 Chara braunii HOM05D003395 ORTHO05D004087 2.3e-35 155.2 988 24.9
SalBow1G6094 Salvia bowleyana HOM05D003395 ORTHO05D004087 5.2e-35 154.1 888 26.4
ClCG10G015680 Citrullus lanatus HOM05D003395 ORTHO05D004087 6.8e-35 153.7 950 24.3
AagrBONN_evm.TU.Sc2ySwM_117.1001 Anthoceros agrestis HOM05D003395 ORTHO05D004087 1.3e-33 149.4 700 28.1
AUR62024500 Chenopodium quinoa HOM05D003395 ORTHO05D004087 2.2e-33 148.7 872 24.7
MBI13_g36804_MAGBIO Magnolia biondii HOM05D003395 ORTHO05D004087 4.9e-33 147.5 812 26.1
Zm00001eb016760 Zea mays HOM05D003395 ORTHO05D004087 6.4e-33 147.1 789 26.6
FAN09G3838 Fragaria x ananassa HOM05D003395 ORTHO05D004087 8.3e-33 146.7 862 26.5
Cc06_g17870 Coffea canephora HOM05D003395 ORTHO05D004087 1.8e-32 145.6 954 24.8
unitig_22.g5792 Utricularia gibba HOM05D003395 ORTHO05D004087 2.7e-31 141.7 888 25.0
Cpa.g.sc182.8 Carica papaya HOM05D003395 ORTHO05D004087 3.9e-30 137.9 369 32.0
Eucgr.K01999 Eucalyptus grandis HOM05D003395 ORTHO05D004087 4.3e-21 107.8 553 27.1
BcaB06g29192 Brassica carinata HOM05D003395 ORTHO05D004087 8.1e-20 103.6 768 24.1
Cre17.g717800 Chlamydomonas reinhardtii HOM05D003395 ORTHO05D004087 4.4e-18 97.8 989 25.4
BcaC07g40053 Brassica carinata HOM05D003395 ORTHO05D004087 2.2e-17 95.5 767 24.5
SEGI_38355 Sequoiadendron giganteum HOM05D003395 ORTHO05D004087 3.7e-17 94.7 272 31.2
Hma1.2p1_0556F.1_g178050 Hydrangea macrophylla HOM05D003395 ORTHO05D004087 1.2e-15 89.7 735 25.3
Thhalv10005836m.g Eutrema salsugineum HOM05D003395 ORTHO05D004087 2.7e-15 88.6 668 24.4
CARHR167550 Cardamine hirsuta HOM05D003395 ORTHO05D004087 1.0e-14 86.7 293 28.7
CANSAT80G0779 Cannabis sativa HOM05D003395 ORTHO05D004087 5.6e-13 80.9 130 33.1
CDE11G0192 Ceratophyllum demersum HOM05D003395 ORTHO05D004087 5.6e-13 80.9 596 24.8
Sabra18G0065400 Salix brachista HOM05D003395 ORTHO05D004087 6.8e-11 73.9 121 34.7
Eucgr.K01765 Eucalyptus grandis HOM05D003395 ORTHO05D004087 8.4e-09 67.0 405 27.2
Gohir.A03G107600 Gossypium hirsutum HOM05D003395 ORTHO05D004087 1.4e-08 66.2 104 36.5
Lsat_1_v5_gn_4_147041 Lactuca sativa HOM05D003395 ORTHO05D004087 1.9e-08 65.9 154 31.8
CAN.G624.32 Capsicum annuum HOM05D003395 ORTHO05D004087 5.4e-08 64.3 503 23.7
Eucgr.K02008 Eucalyptus grandis HOM05D003395 ORTHO05D004087 5.4e-08 64.3 144 34.0
FvH4_6g38800 Fragaria vesca HOM05D003395 ORTHO05D004087 1.6e-07 62.8 385 27.5
Haze_07832 Corylus avellana HOM05D003395 ORTHO05D004087 3.5e-07 61.6 252 26.6
CARHR167540 Cardamine hirsuta HOM05D003395 ORTHO05D004087 4.6e-07 61.2 151 32.5
Lsat_1_v5_gn_4_163840 Lactuca sativa HOM05D003395 ORTHO05D004087 1.3e-06 59.7 233 27.0
SHI10456 Sapria himalayana HOM05D003395 ORTHO05D004087 1.7e-06 59.3 558 26.2
PGSC0003DMG401030272 Solanum tuberosum HOM05D003395 ORTHO05D004087 6.6e-06 57.4 114 34.2


User provided reference genes

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