Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PRCOL_00003584 Prasinoderma coloniale HOM05D006898 ORTHO05D008506 0.0e+00 1095.1 602 100.0
MCO07G214 Micromonas commoda HOM05D006898 ORTHO05D008506 7.1e-137 491.9 460 55.7
Ca_29432_v3 Cicer arietinum L. HOM05D006898 ORTHO05D008506 8.6e-42 176.0 292 39.0
MCO14G201 Micromonas commoda HOM05D006898 ORTHO05D008506 9.9e-22 109.4 350 30.3
Cre13.g568150 Chlamydomonas reinhardtii HOM05D006898 ORTHO05D008506 1.7e-21 108.6 333 29.7
SMO119G0345 Selaginella moellendorffii HOM05D006898 ORTHO05D008506 4.9e-21 107.1 331 29.9
PRCOL_00004989 Prasinoderma coloniale HOM05D006898 ORTHO05D008506 2.1e-19 101.7 334 29.3
Pp3c15_22340 Physcomitrium patens HOM05D006898 ORTHO05D008506 1.5e-17 95.5 241 32.8
arahy.Tifrunner.gnm1.ann1.UC5PKR Arachis hypogaea HOM05D006898 ORTHO05D008506 1.9e-17 95.1 345 28.7
CsaV3_3G046900 Cucumis sativus L. HOM05D006898 ORTHO05D008506 1.9e-17 95.1 342 27.5
Os02g0137600 Oryza sativa ssp. japonica HOM05D006898 ORTHO05D008506 1.9e-17 95.1 349 28.4
PRCOL_00005916 Prasinoderma coloniale HOM05D006053 ORTHO05D008381 2.5e-17 94.7 91 49.5
arahy.Tifrunner.gnm1.ann1.TJ47BC Arachis hypogaea HOM05D006898 ORTHO05D008506 5.6e-17 93.6 319 28.8
HPP92_018581 Vanilla planifolia HOM05D006898 ORTHO05D008506 5.6e-17 93.6 339 28.0
ATR0626G384 Amborella trichopoda HOM05D006898 ORTHO05D008506 7.3e-17 93.2 345 29.6
Mapoly0071s0027 Marchantia polymorpha HOM05D006898 ORTHO05D008506 1.2e-16 92.4 349 27.5
MELO3C003647.2 Cucumis melo HOM05D006898 ORTHO05D008506 2.1e-16 91.7 344 27.6
ClCG05G017390 Citrullus lanatus HOM05D006898 ORTHO05D008506 3.6e-16 90.9 342 27.8
PSO017G3342 Papaver somniferum HOM05D006898 ORTHO05D008506 4.7e-16 90.5 350 28.0
Lalb_Chr22g0361311 Lupinus albus HOM05D006898 ORTHO05D008506 1.4e-15 89.0 344 27.6
Ciclev10008259m.g Citrus clementina HOM05D006898 ORTHO05D008506 2.4e-15 88.2 346 27.5
unitig_748.g8163 Utricularia gibba HOM05D006898 ORTHO05D008506 4.0e-15 87.4 351 27.9
GSVIVG01035599001 Vitis vinifera HOM05D006898 ORTHO05D008506 4.0e-15 87.4 336 28.9
EL10Ac2g03651 Beta vulgaris HOM05D006898 ORTHO05D008506 6.8e-15 86.7 358 28.2
Medtr1g010070 Medicago truncatula HOM05D006898 ORTHO05D008506 6.8e-15 86.7 342 27.5
PSO170G2692 Papaver somniferum HOM05D006898 ORTHO05D008506 6.8e-15 86.7 352 27.6
HanXRQChr17g0538631 Helianthus annuus HOM05D006898 ORTHO05D008506 8.9e-15 86.3 341 27.3
PGSC0003DMG400003978 Solanum tuberosum HOM05D006898 ORTHO05D008506 8.9e-15 86.3 351 27.9
FAN24G1534 Fragaria x ananassa HOM05D006898 ORTHO05D008506 1.2e-14 85.9 352 26.4
Sed0005742 Sechium edule HOM05D006898 ORTHO05D008506 1.2e-14 85.9 340 28.5
Aqoxy7G02535 Aquilegia oxysepala HOM05D006898 ORTHO05D008506 2.0e-14 85.1 347 27.7
Psat6g031720 Pisum sativum HOM05D006898 ORTHO05D008506 2.0e-14 85.1 342 27.8
Rhsim07G0174000 Rhododendron simsii HOM05D006898 ORTHO05D008506 2.0e-14 85.1 354 27.7
SalBow4G3225 Salvia bowleyana HOM05D006898 ORTHO05D008506 2.0e-14 85.1 350 29.4
TWI31G0903 Tripterygium wilfordii HOM05D006898 ORTHO05D008506 2.0e-14 85.1 341 28.7
FvH4_2g30630 Fragaria vesca HOM05D006898 ORTHO05D008506 2.6e-14 84.7 349 26.1
PGR142G0710 Punica granatum HOM05D006898 ORTHO05D008506 2.6e-14 84.7 353 27.5
SGA_v2.0_scaffold27G11702 Striga asiatica HOM05D006898 ORTHO05D008506 2.6e-14 84.7 271 29.5
Solyc11g005580.1 Solanum lycopersicum HOM05D006898 ORTHO05D008506 3.4e-14 84.3 355 27.3
Oeu007490.1 Olea europaea HOM05D006898 ORTHO05D008506 4.4e-14 84.0 316 28.5
FAN15G2927 Fragaria x ananassa HOM05D006898 ORTHO05D008506 5.8e-14 83.6 352 25.9
Phvul.001G057500 Phaseolus vulgaris HOM05D006898 ORTHO05D008506 5.8e-14 83.6 340 26.8
Ca_12885_v3 Cicer arietinum L. HOM05D006898 ORTHO05D008506 7.6e-14 83.2 316 28.2
Prupe.1G463000 Prunus persica HOM05D006898 ORTHO05D008506 9.9e-14 82.8 359 27.3
Sopen11g001550 Solanum pennellii HOM05D006898 ORTHO05D008506 9.9e-14 82.8 355 27.3
CAN.G476.10 Capsicum annuum HOM05D006898 ORTHO05D008506 1.3e-13 82.4 362 26.8
DCAR_004547 Daucus carota HOM05D006898 ORTHO05D008506 1.3e-13 82.4 359 28.1
Gorai.001G001000 Gossypium raimondii HOM05D006898 ORTHO05D008506 1.3e-13 82.4 338 26.9
Nitab4.5_0001582g0070 Nicotiana tabacum HOM05D006898 ORTHO05D008506 1.3e-13 82.4 350 27.4
Migut.A00518 Erythranthe guttata HOM05D006898 ORTHO05D008506 1.7e-13 82.0 347 26.2
HPP92_018578 Vanilla planifolia HOM05D006898 ORTHO05D008506 1.7e-13 82.0 335 27.5
Eucgr.C02146 Eucalyptus grandis HOM05D006898 ORTHO05D008506 2.2e-13 81.6 330 28.2
Hma1.2p1_0214F.1_g090725 Hydrangea macrophylla HOM05D006898 ORTHO05D008506 2.2e-13 81.6 356 27.5
Gohir.D07G001300 Gossypium hirsutum HOM05D006898 ORTHO05D008506 2.9e-13 81.3 344 26.7
CDE06G0577 Ceratophyllum demersum HOM05D006898 ORTHO05D008506 3.8e-13 80.9 344 26.7
Potri.005G179700 Populus trichocarpa HOM05D006898 ORTHO05D008506 3.8e-13 80.9 347 27.1
Glyma.11G174910 Glycine max HOM05D006898 ORTHO05D008506 6.4e-13 80.1 351 27.6
Lj5g0012927 Lotus japonicus HOM05D006898 ORTHO05D008506 6.4e-13 80.1 324 27.2
TPR.G12020 Trifolium pratense HOM05D006898 ORTHO05D008506 6.4e-13 80.1 324 27.5
A10p26780 Brassica napus HOM05D006898 ORTHO05D008506 8.4e-13 79.7 357 26.3
Nitab4.5_0002138g0020 Nicotiana tabacum HOM05D006898 ORTHO05D008506 8.4e-13 79.7 350 27.7
Atru.chr7.2715 Acer truncatum HOM05D006898 ORTHO05D008506 1.4e-12 79.0 341 26.1
Hund19373 Selenicereus undatus HOM05D006898 ORTHO05D008506 1.4e-12 79.0 276 28.6
THA.LOC104824957 Tarenaya hassleriana HOM05D006898 ORTHO05D008506 1.4e-12 79.0 349 25.2
Ah.10g033620 Amaranthus hybridus HOM05D006898 ORTHO05D008506 1.9e-12 78.6 271 28.0
BolC9t59415H Brassica oleracea HOM05D006898 ORTHO05D008506 1.9e-12 78.6 321 27.4
Gohir.A07G000900 Gossypium hirsutum HOM05D006898 ORTHO05D008506 1.9e-12 78.6 341 26.4
Sc06g0001380 Simmondsia chinensis HOM05D006898 ORTHO05D008506 1.9e-12 78.6 366 25.7
VMungo0647G2166 Vigna mungo HOM05D006898 ORTHO05D008506 1.9e-12 78.6 338 27.8
BraA10t44732Z Brassica rapa HOM05D004194 ORTHO05D005641 3.2e-12 77.8 355 26.5
ECA246G1941 Erigeron canadensis HOM05D006898 ORTHO05D008506 3.2e-12 77.8 355 25.4
Actinidia03566 Actinidia chinensis HOM05D006898 ORTHO05D008506 4.1e-12 77.4 349 26.6
C09p65920 Brassica napus HOM05D006898 ORTHO05D008506 5.4e-12 77.0 343 26.2
Peaxi162Scf00025g02821 Petunia axillaris HOM05D006898 ORTHO05D008506 7.1e-12 76.6 364 26.4
Sp6g32580 Schrenkiella parvula HOM05D006898 ORTHO05D008506 7.1e-12 76.6 343 25.7
Glyma.14G132300 Glycine max HOM05D006898 ORTHO05D008506 9.2e-12 76.3 343 28.0
Dinv09447 Davidia involucrata HOM05D006898 ORTHO05D008506 1.2e-11 75.9 329 26.7
QL12p024620 Quercus lobata HOM05D006898 ORTHO05D008506 1.6e-11 75.5 350 27.4
BcaC04g19278 Brassica carinata HOM05D006898 ORTHO05D008506 2.1e-11 75.1 343 26.2
Thecc.09G001800 Theobroma cacao HOM05D006898 ORTHO05D008506 2.1e-11 75.1 345 25.8
Sabra05G0135900 Salix brachista HOM05D006898 ORTHO05D008506 2.7e-11 74.7 269 28.6
Duzib168G1571 Durio zibethinus HOM05D006898 ORTHO05D008506 3.5e-11 74.3 353 26.3
CARHR202380 Cardamine hirsuta HOM05D006898 ORTHO05D008506 6.0e-11 73.6 343 25.4
RcHm_v2.0_Chr6g0312281 Rosa chinensis HOM05D006898 ORTHO05D008506 7.8e-11 73.2 351 24.5
Aa31LG3G16210 Aethionema arabicum HOM05D004194 ORTHO05D005641 1.0e-10 72.8 320 23.4
Lsat_1_v5_gn_3_25521 Lactuca sativa HOM05D006898 ORTHO05D008506 1.0e-10 72.8 244 27.9
MD15G1110800 Malus domestica HOM05D006898 ORTHO05D008506 1.3e-10 72.4 332 27.1
AagrBONN_evm.TU.Sc2ySwM_362.1618 Anthoceros agrestis HOM05D006898 ORTHO05D008506 1.7e-10 72.0 205 33.2
Thhalv10013596m.g Eutrema salsugineum HOM05D006898 ORTHO05D008506 2.3e-10 71.6 321 26.5
AUR62028029 Chenopodium quinoa HOM05D006898 ORTHO05D008506 3.9e-10 70.9 356 24.7
CiPaw.07G215200 Carya illinoinensis HOM05D006898 ORTHO05D008506 5.1e-10 70.5 355 25.6
Carub.0006s0940 Capsella rubella HOM05D006898 ORTHO05D008506 8.7e-10 69.7 344 24.4
AL6G21470 Arabidopsis lyrata HOM05D006898 ORTHO05D008506 1.1e-09 69.3 344 23.5
AT5G10910 Arabidopsis thaliana HOM05D006898 ORTHO05D008506 2.5e-09 68.2 344 24.1
FAN20G2020 Fragaria x ananassa HOM05D006898 ORTHO05D008506 2.5e-09 68.2 287 26.5
Haze_21680 Corylus avellana HOM05D006898 ORTHO05D008506 7.3e-09 66.6 375 25.9
vmacro05087 Vaccinium macrocarpon HOM05D006898 ORTHO05D008506 7.3e-09 66.6 245 28.6
COL.COLO4_18635 Corchorus olitorius HOM05D006898 ORTHO05D008506 2.8e-08 64.7 295 26.8
Zm00001eb231840 Zea mays HOM05D006898 ORTHO05D008506 2.8e-08 64.7 154 30.5
Glyma.17G200800 Glycine max HOM05D006898 ORTHO05D008506 4.7e-08 63.9 205 30.7
HPP92_006599 Vanilla planifolia HOM05D006053 ORTHO05D008381 4.7e-08 63.9 71 39.4
Lj8A413G21 Lonicera japonica HOM05D006898 ORTHO05D008506 1.4e-07 62.4 246 29.3
AUR62020696 Chenopodium quinoa HOM05D006898 ORTHO05D008506 1.8e-07 62.0 265 27.2
DCAR_002571 Daucus carota HOM05D002658 ORTHO05D003000 3.1e-07 61.2 115 33.9
MSTRG.23542 Avicennia marina HOM05D006053 ORTHO05D008381 6.9e-07 60.1 73 35.6
Cfa003747 Carpinus fangiana HOM05D001873 ORTHO05D001976 9.0e-07 59.7 212 25.0
Migut.L00294 Erythranthe guttata HOM05D006053 ORTHO05D008381 9.0e-07 59.7 129 30.2
Nn1g06040 Nelumbo nucifera HOM05D002097 ORTHO05D002248 9.0e-07 59.7 196 27.6
Peaxi162Scf00408g00034 Petunia axillaris HOM05D006053 ORTHO05D008381 9.0e-07 59.7 121 28.9
AUR62022513 Chenopodium quinoa HOM05D006053 ORTHO05D008381 1.2e-06 59.3 84 34.5
PSO063G0618 Papaver somniferum HOM05D000142 ORTHO05D000124 1.5e-06 58.9 77 36.4
CANSAT21G1714 Cannabis sativa HOM05D006898 ORTHO05D008506 2.0e-06 58.5 237 26.6
AUR62038385 Chenopodium quinoa HOM05D006053 ORTHO05D008381 2.0e-06 58.5 104 32.7
AUR62038388 Chenopodium quinoa HOM05D006053 ORTHO05D008381 2.0e-06 58.5 68 38.2
MD08G1133300 Malus domestica HOM05D006898 ORTHO05D008506 2.0e-06 58.5 244 27.9
Sabra16G0202500 Salix brachista HOM05D000142 ORTHO05D000124 2.0e-06 58.5 89 36.0
SEGI_38671 Sequoiadendron giganteum HOM05D006053 ORTHO05D008381 2.0e-06 58.5 137 27.7
AagrBONN_evm.TU.Sc2ySwM_368.1156 Anthoceros agrestis HOM05D006053 ORTHO05D008381 2.6e-06 58.2 81 33.3
CBR_g66684 Chara braunii HOM05D001873 ORTHO05D001976 2.6e-06 58.2 107 32.7
MCO06G063 Micromonas commoda HOM05D004266 ORTHO05D005151 2.6e-06 58.2 78 41.0
Sc20g0002520 Simmondsia chinensis HOM05D006053 ORTHO05D008381 2.6e-06 58.2 73 32.9
TWI63G0066 Tripterygium wilfordii HOM05D006053 ORTHO05D008381 2.6e-06 58.2 70 35.7
CBR_g49981 Chara braunii HOM05D002658 ORTHO05D003000 3.4e-06 57.8 85 40.0
Nitab4.5_0000120g0180 Nicotiana tabacum HOM05D006053 ORTHO05D008381 3.4e-06 57.8 158 27.2
Ah.16g107460 Amaranthus hybridus HOM05D006053 ORTHO05D008381 4.4e-06 57.4 89 31.5
CDE04G3245 Ceratophyllum demersum HOM05D006053 ORTHO05D008381 4.4e-06 57.4 75 32.0
PSO339G3195 Papaver somniferum HOM05D006053 ORTHO05D008381 4.4e-06 57.4 86 30.2
PSO384G4800 Papaver somniferum HOM05D006053 ORTHO05D008381 4.4e-06 57.4 86 30.2
Peaxi162Scf00038g01644 Petunia axillaris HOM05D000285 ORTHO05D000241 5.8e-06 57.0 157 28.0
Potri.006G202000 Populus trichocarpa HOM05D000142 ORTHO05D007638 5.8e-06 57.0 113 31.0
TAR623G1578 Trochodendron aralioides HOM05D006053 ORTHO05D008381 5.8e-06 57.0 119 29.4
ATR0113G011 Amborella trichopoda HOM05D006053 ORTHO05D008381 7.6e-06 56.6 73 34.2
Cre06.g275100 Chlamydomonas reinhardtii HOM05D002658 ORTHO05D003000 7.6e-06 56.6 80 36.2
DCAR_015208 Daucus carota HOM05D006053 ORTHO05D008381 7.6e-06 56.6 89 31.5
FvH4_7g21531 Fragaria vesca HOM05D006053 ORTHO05D008381 7.6e-06 56.6 100 30.0
FAN06G4406 Fragaria x ananassa HOM05D006053 ORTHO05D008381 7.6e-06 56.6 100 30.0
Gohir.D10G223000 Gossypium hirsutum HOM05D006053 ORTHO05D008381 7.6e-06 56.6 97 29.9
Lj8C418G2 Lonicera japonica HOM05D006898 ORTHO05D008506 7.6e-06 56.6 162 29.6
Lj8C88T8 Lonicera japonica HOM05D006053 ORTHO05D008381 7.6e-06 56.6 111 29.7
Pp3c14_1940 Physcomitrium patens HOM05D006053 ORTHO05D008381 7.6e-06 56.6 95 26.3
HPP92_004408 Vanilla planifolia HOM05D002097 ORTHO05D002248 7.6e-06 56.6 194 27.8
Zm00001eb205130 Zea mays HOM05D000285 ORTHO05D000241 7.6e-06 56.6 136 27.9
FAN06G2982 Fragaria x ananassa HOM05D006053 ORTHO05D008381 9.9e-06 56.2 100 30.0
PGSC0003DMG400031213 Solanum tuberosum HOM05D006053 ORTHO05D008381 9.9e-06 56.2 137 26.3
THA.LOC104820414 Tarenaya hassleriana HOM05D002658 ORTHO05D003000 9.9e-06 56.2 165 29.1
TAR633G0864 Trochodendron aralioides HOM05D000142 ORTHO05D007638 9.9e-06 56.2 96 32.3


User provided reference genes

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