Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PRCOL_00001232 Prasinoderma coloniale HOM05D004312 ORTHO05D005394 1.7e-244 849.0 440 100.0
CDE05G1308 Ceratophyllum demersum HOM05D004312 ORTHO05D005394 1.6e-77 294.3 378 38.4
CANSAT25G0949 Cannabis sativa HOM05D004312 ORTHO05D005394 7.8e-77 292.0 385 37.7
Cpa.g.sc97.70 Carica papaya HOM05D004312 ORTHO05D005394 3.0e-76 290.0 387 38.0
Mapoly0006s0078 Marchantia polymorpha HOM05D004312 ORTHO05D005394 6.6e-76 288.9 381 37.0
Pp3c24_1010 Physcomitrium patens HOM05D004312 ORTHO05D005394 6.6e-76 288.9 375 37.1
HPP92_002196 Vanilla planifolia HOM05D004312 ORTHO05D005394 8.7e-76 288.5 391 37.1
MBI18_g30687_MAGBIO Magnolia biondii HOM05D004312 ORTHO05D005394 1.1e-75 288.1 375 37.6
THA.LOC104825403 Tarenaya hassleriana HOM05D004312 ORTHO05D005394 1.9e-75 287.3 391 37.1
FvH4_3g21810 Fragaria vesca HOM05D004312 ORTHO05D005394 3.3e-75 286.6 375 36.5
FAN11G3136 Fragaria x ananassa HOM05D004312 ORTHO05D005394 3.3e-75 286.6 375 36.5
TAR624G0412 Trochodendron aralioides HOM05D004312 ORTHO05D005394 3.3e-75 286.6 383 37.9
Thecc.07G052900 Theobroma cacao HOM05D004312 ORTHO05D005394 4.3e-75 286.2 381 37.0
RcHm_v2.0_Chr5g0037411 Rosa chinensis HOM05D004312 ORTHO05D005394 5.6e-75 285.8 375 36.3
HanXRQChr11g0332981 Helianthus annuus HOM05D004312 ORTHO05D005394 7.3e-75 285.4 384 37.8
Cc05_g13230 Coffea canephora HOM05D004312 ORTHO05D005394 1.3e-74 284.6 375 36.8
FAN25G1427 Fragaria x ananassa HOM05D004312 ORTHO05D005394 1.3e-74 284.6 375 36.3
Nn1g06998 Nelumbo nucifera HOM05D004312 ORTHO05D005394 1.3e-74 284.6 375 37.1
Sed0007148 Sechium edule HOM05D004312 ORTHO05D005394 1.3e-74 284.6 389 36.2
Os08g0137100 Oryza sativa ssp. japonica HOM05D004312 ORTHO05D005394 1.6e-74 284.3 392 35.7
Potri.001G417300 Populus trichocarpa HOM05D004312 ORTHO05D005394 1.6e-74 284.3 381 37.0
QL08p013781 Quercus lobata HOM05D004312 ORTHO05D005394 1.6e-74 284.3 375 36.3
arahy.Tifrunner.gnm1.ann1.IBM9RL Arachis hypogaea HOM05D004312 ORTHO05D005394 2.1e-74 283.9 392 36.2
arahy.Tifrunner.gnm1.ann1.Z28QK4 Arachis hypogaea HOM05D004312 ORTHO05D005394 2.1e-74 283.9 392 36.2
Lalb_Chr14g0366111 Lupinus albus HOM05D004312 ORTHO05D005394 2.1e-74 283.9 399 35.6
Eucgr.F03425 Eucalyptus grandis HOM05D004312 ORTHO05D005394 2.8e-74 283.5 388 36.9
AUR62015644 Chenopodium quinoa HOM05D004312 ORTHO05D005394 3.6e-74 283.1 373 37.0
Duzib213G0708 Durio zibethinus HOM05D004312 ORTHO05D005394 3.6e-74 283.1 375 36.5
MD11G1227100 Malus domestica HOM05D004312 ORTHO05D005394 3.6e-74 283.1 375 35.7
Psat6g038960 Pisum sativum HOM05D004312 ORTHO05D005394 3.6e-74 283.1 376 35.9
GSVIVG01014605001 Vitis vinifera HOM05D004312 ORTHO05D005394 3.6e-74 283.1 381 37.8
PSO675G7739 Papaver somniferum HOM05D004312 ORTHO05D005394 4.8e-74 282.7 375 36.8
PGR031G3547 Punica granatum HOM05D004312 ORTHO05D005394 4.8e-74 282.7 389 36.5
CiPaw.11G183600 Carya illinoinensis HOM05D004312 ORTHO05D005394 6.2e-74 282.3 381 36.2
Ciclev10008697m.g Citrus clementina HOM05D004312 ORTHO05D005394 6.2e-74 282.3 381 37.0
PSO541G5632 Papaver somniferum HOM05D004312 ORTHO05D005394 6.2e-74 282.3 375 36.8
ECA236G2119 Erigeron canadensis HOM05D004312 ORTHO05D005394 8.1e-74 282.0 378 37.0
Gohir.A13G141400 Gossypium hirsutum HOM05D004312 ORTHO05D005394 8.1e-74 282.0 375 36.3
Lsat_1_v5_gn_7_108381 Lactuca sativa HOM05D004312 ORTHO05D005394 1.1e-73 281.6 378 36.8
MD03G1211700 Malus domestica HOM05D004312 ORTHO05D005394 1.1e-73 281.6 375 35.7
Cfa020416 Carpinus fangiana HOM05D004312 ORTHO05D005394 1.4e-73 281.2 375 36.0
Gohir.D13G146100 Gossypium hirsutum HOM05D004312 ORTHO05D005394 1.4e-73 281.2 375 36.3
Solyc07g064090.3 Solanum lycopersicum HOM05D004312 ORTHO05D005394 1.4e-73 281.2 381 36.2
Sopen07g032230 Solanum pennellii HOM05D004312 ORTHO05D005394 1.4e-73 281.2 381 36.2
Glyma.10G022000 Glycine max HOM05D004312 ORTHO05D005394 1.8e-73 280.8 385 36.1
PGSC0003DMG401019226 Solanum tuberosum HOM05D004312 ORTHO05D005394 1.8e-73 280.8 381 36.2
Atru.chr2.3209 Acer truncatum HOM05D004312 ORTHO05D005394 2.4e-73 280.4 389 36.0
Zm00001eb416950 Zea mays HOM05D004312 ORTHO05D005394 2.4e-73 280.4 361 36.6
SEGI_02518 Sequoiadendron giganteum HOM05D004312 ORTHO05D005394 3.1e-73 280.0 373 36.7
QL08p013340 Quercus lobata HOM05D004312 ORTHO05D005394 4.0e-73 279.6 389 35.2
Glyma.02G152200 Glycine max HOM05D004312 ORTHO05D005394 5.3e-73 279.3 385 35.8
VMungo1215G3096 Vigna mungo HOM05D004312 ORTHO05D005394 6.9e-73 278.9 376 35.6
Phvul.005G091500 Phaseolus vulgaris HOM05D004312 ORTHO05D005394 9.0e-73 278.5 376 35.6
Lj3g0015514 Lotus japonicus HOM05D004312 ORTHO05D005394 1.2e-72 278.1 385 35.8
TPR.G33318 Trifolium pratense HOM05D004312 ORTHO05D005394 1.2e-72 278.1 376 35.6
Ca_12696_v3 Cicer arietinum L. HOM05D004312 ORTHO05D005394 2.0e-72 277.3 392 34.9
Dinv22305 Davidia involucrata HOM05D004312 ORTHO05D005394 2.0e-72 277.3 375 36.3
Medtr1g028310 Medicago truncatula HOM05D004312 ORTHO05D005394 2.0e-72 277.3 377 35.3
CSS0011160 Camellia sinensis var. sinensis HOM05D004312 ORTHO05D005394 2.6e-72 276.9 378 36.2
DCAR_008679 Daucus carota HOM05D004312 ORTHO05D005394 4.4e-72 276.2 381 36.0
Glyma.13G287200 Glycine max HOM05D004312 ORTHO05D005394 5.8e-72 275.8 381 35.4
Manes.15G076500 Manihot esculenta HOM05D004312 ORTHO05D005394 5.8e-72 275.8 379 35.6
Nitab4.5_0009192g0020 Nicotiana tabacum HOM05D004312 ORTHO05D005394 5.8e-72 275.8 381 35.7
Migut.M01812 Erythranthe guttata HOM05D004312 ORTHO05D005394 7.6e-72 275.4 381 35.7
Actinidia35316 Actinidia chinensis HOM05D004312 ORTHO05D005394 9.9e-72 275.0 378 36.0
Nitab4.5_0000397g0030 Nicotiana tabacum HOM05D004312 ORTHO05D005394 9.9e-72 275.0 381 35.7
HanXRQChr15g0495681 Helianthus annuus HOM05D004312 ORTHO05D005394 1.7e-71 274.2 381 37.5
AagrBONN_evm.TU.Sc2ySwM_117.25 Anthoceros agrestis HOM05D004312 ORTHO05D005394 2.2e-71 273.9 375 36.8
COL.COLO4_09570 Corchorus olitorius HOM05D004312 ORTHO05D005394 2.2e-71 273.9 381 36.5
AL3G34660 Arabidopsis lyrata HOM05D004312 ORTHO05D005394 3.8e-71 273.1 389 36.2
AT3G20740 Arabidopsis thaliana HOM05D004312 ORTHO05D005394 1.4e-70 271.2 389 35.7
MSTRG.6890 Avicennia marina HOM05D004312 ORTHO05D005394 1.4e-70 271.2 381 36.2
Lj8A165T113 Lonicera japonica HOM05D004312 ORTHO05D005394 1.9e-70 270.8 365 37.5
TWI39G0013 Tripterygium wilfordii HOM05D004312 ORTHO05D005394 1.9e-70 270.8 392 34.9
Lalb_Chr14g0366131 Lupinus albus HOM05D004312 ORTHO05D005394 7.1e-70 268.9 399 34.1
Haze_09609 Corylus avellana HOM05D004312 ORTHO05D005394 2.1e-69 267.3 394 34.8
SGA_v2.0_scaffold9G04799 Striga asiatica HOM05D004312 ORTHO05D005394 2.7e-69 266.9 366 37.2
vmacro09746 Vaccinium macrocarpon HOM05D004312 ORTHO05D005394 2.7e-69 266.9 409 34.2
Thhalv10020971m.g Eutrema salsugineum HOM05D004312 ORTHO05D005394 3.5e-69 266.5 389 35.0
CARHR096560 Cardamine hirsuta HOM05D004312 ORTHO05D005394 4.6e-69 266.2 389 35.2
Sp3g18760 Schrenkiella parvula HOM05D004312 ORTHO05D005394 6.0e-69 265.8 389 35.2
Zm00001eb173090 Zea mays HOM05D004312 ORTHO05D005394 1.7e-68 264.2 373 34.9
PSO384G4488 Papaver somniferum HOM05D004312 ORTHO05D005394 2.3e-68 263.8 377 35.5
BolC1t04310H Brassica oleracea HOM05D004312 ORTHO05D005394 3.0e-68 263.5 389 35.0
Aa31LG8G7480 Aethionema arabicum HOM05D004312 ORTHO05D005394 3.9e-68 263.1 398 35.2
BcaC09g49015 Brassica carinata HOM05D004312 ORTHO05D005394 3.9e-68 263.1 389 35.0
FAN21G3328 Fragaria x ananassa HOM05D004312 ORTHO05D005394 3.9e-68 263.1 424 32.1
Carub.0003s2070 Capsella rubella HOM05D004312 ORTHO05D005394 5.1e-68 262.7 389 34.4
A01p34090 Brassica napus HOM05D004312 ORTHO05D005394 8.7e-68 261.9 389 34.7
BraA01t03513Z Brassica rapa HOM05D004312 ORTHO05D005394 8.7e-68 261.9 389 34.7
ATR0073G014 Amborella trichopoda HOM05D004312 ORTHO05D005394 1.1e-67 261.5 336 36.9
Os08g0137250 Oryza sativa ssp. japonica HOM05D004312 ORTHO05D005394 1.1e-67 261.5 392 34.9
unitig_746.g26649 Utricularia gibba HOM05D004312 ORTHO05D005394 1.1e-67 261.5 389 35.2
C01p43500 Brassica napus HOM05D004312 ORTHO05D005394 1.9e-67 260.8 389 34.7
BcaB04g20634 Brassica carinata HOM05D004312 ORTHO05D005394 2.5e-67 260.4 375 34.9
DCAR_006577 Daucus carota HOM05D004312 ORTHO05D005394 1.3e-66 258.1 383 34.7
BcaB06g26144 Brassica carinata HOM05D004312 ORTHO05D005394 6.2e-66 255.8 397 33.0
A05p28030 Brassica napus HOM05D004312 ORTHO05D005394 4.0e-65 253.1 389 33.4
Hund23308 Selenicereus undatus HOM05D004312 ORTHO05D005394 4.0e-65 253.1 373 35.1
BraA05t21685Z Brassica rapa HOM05D004312 ORTHO05D005394 5.3e-65 252.7 389 33.2
CsaV3_3G022910 Cucumis sativus L. HOM05D004312 ORTHO05D005394 6.9e-65 252.3 348 35.9
EL10Ac4g07972 Beta vulgaris HOM05D004312 ORTHO05D005394 1.5e-64 251.1 388 34.8
SMO347G0342 Selaginella moellendorffii HOM05D004312 ORTHO05D005394 7.6e-64 248.8 377 34.0
Hma1.2p1_1549F.1_g290070 Hydrangea macrophylla HOM05D004312 ORTHO05D005394 1.1e-62 245.0 359 34.3
BcaC05g28288 Brassica carinata HOM05D004312 ORTHO05D005394 3.2e-62 243.4 389 31.9
BolC5t33070H Brassica oleracea HOM05D004312 ORTHO05D005394 3.2e-62 243.4 389 31.9
C05p43470 Brassica napus HOM05D004312 ORTHO05D005394 1.2e-61 241.5 389 31.6
BraA05t21689Z Brassica rapa HOM05D004312 ORTHO05D005394 1.2e-61 241.5 401 31.2
A05p28070 Brassica napus HOM05D004312 ORTHO05D005394 2.7e-61 240.4 401 31.2
arahy.Tifrunner.gnm1.ann1.08T3T7 Arachis hypogaea HOM05D004312 ORTHO05D005394 4.6e-61 239.6 392 32.4
arahy.Tifrunner.gnm1.ann1.43SLKT Arachis hypogaea HOM05D004312 ORTHO05D005394 4.6e-61 239.6 392 32.4
PSO339G5963 Papaver somniferum HOM05D004312 ORTHO05D005394 6.7e-60 235.7 377 33.4
MELO3C018124.2 Cucumis melo HOM05D004312 ORTHO05D005394 8.7e-60 235.3 333 36.0
CBR_g21046 Chara braunii HOM05D004312 ORTHO05D005394 1.1e-59 235.0 385 34.3
Gorai.013G163900 Gossypium raimondii HOM05D004312 ORTHO05D005394 4.3e-59 233.0 318 36.5
Phvul.007G166700 Phaseolus vulgaris HOM05D004312 ORTHO05D005394 1.3e-58 231.5 311 35.0
Sabra16G0283500 Salix brachista HOM05D004312 ORTHO05D005394 8.1e-58 228.8 383 33.2
Sc07g0002710 Simmondsia chinensis HOM05D004312 ORTHO05D005394 2.4e-57 227.3 320 36.6
Peaxi162Scf01086g00145 Petunia axillaris HOM05D004312 ORTHO05D005394 9.0e-57 225.3 313 33.9
AUR62020555 Chenopodium quinoa HOM05D004312 ORTHO05D005394 1.2e-56 224.9 373 32.4
Haze_27219 Corylus avellana HOM05D004312 ORTHO05D005394 4.5e-56 223.0 395 32.9
SalBow3G2463 Salvia bowleyana HOM05D004312 ORTHO05D005394 5.8e-56 222.6 381 32.3
BcaC05g28285 Brassica carinata HOM05D004312 ORTHO05D005394 1.0e-55 221.9 390 30.0
Aqoxy6G01703 Aquilegia oxysepala HOM05D004312 ORTHO05D005394 6.0e-53 212.6 373 31.4
ClCG05G014780 Citrullus lanatus HOM05D004312 ORTHO05D005394 6.0e-53 212.6 375 33.3
Prupe.4G202200 Prunus persica HOM05D004312 ORTHO05D005394 6.7e-52 209.1 282 34.0
Hma1.2p1_0562F.1_g179020 Hydrangea macrophylla HOM05D004312 ORTHO05D005394 1.9e-51 207.6 267 40.1
BolC5t33065H Brassica oleracea HOM05D004312 ORTHO05D005394 3.3e-51 206.8 389 29.8
RhsimUnG0253200 Rhododendron simsii HOM05D004312 ORTHO05D005394 4.3e-51 206.5 270 36.3
MCO04G236 Micromonas commoda HOM05D004312 ORTHO05D005394 7.4e-51 205.7 414 31.6
BcaB06g26146 Brassica carinata HOM05D004312 ORTHO05D005394 2.1e-50 204.1 381 30.2
QL08p013465 Quercus lobata HOM05D004312 ORTHO05D005394 3.7e-50 203.4 241 39.8
MCO04G208 Micromonas commoda HOM05D004312 ORTHO05D005394 1.0e-47 195.3 441 29.7
Cre16.g693750 Chlamydomonas reinhardtii HOM05D004312 ORTHO05D005394 1.5e-40 171.4 477 27.5
Glyma.12G214400 Glycine max HOM05D004312 ORTHO05D005394 2.9e-39 167.2 252 35.7
BcaC05g28287 Brassica carinata HOM05D004312 ORTHO05D005394 4.2e-38 163.3 365 27.7
A05p28060 Brassica napus HOM05D004312 ORTHO05D005394 3.0e-36 157.1 353 28.3
SalBow1G0135 Salvia bowleyana HOM05D004312 ORTHO05D005394 3.0e-36 157.1 195 40.0
C05p43330 Brassica napus HOM05D004312 ORTHO05D005394 5.3e-33 146.4 267 31.5
BolC5t33069H Brassica oleracea HOM05D004312 ORTHO05D005394 7.2e-30 136.0 282 28.0
C05p43450 Brassica napus HOM05D004312 ORTHO05D005394 1.2e-29 135.2 282 28.4
Actinidia10705 Actinidia chinensis HOM05D004312 ORTHO05D005394 1.0e-28 132.1 334 26.3
CsaV3_UNG229030 Cucumis sativus L. HOM05D004312 ORTHO05D005394 4.8e-18 96.7 391 25.8
HanXRQChr09g0244121 Helianthus annuus HOM05D004312 ORTHO05D005394 2.7e-16 90.9 124 41.1
BraA05t21687Z Brassica rapa HOM05D004312 ORTHO05D005394 1.3e-15 88.6 132 33.3
Cfa024711 Carpinus fangiana HOM05D004312 ORTHO05D122356 1.7e-15 88.2 315 23.5
Duzib116G0859 Durio zibethinus HOM05D004312 ORTHO05D005394 5.0e-15 86.7 169 26.6
QL08p013461 Quercus lobata HOM05D004312 ORTHO05D005394 8.5e-15 85.9 135 29.6
SalBow1G5971 Salvia bowleyana HOM05D004312 ORTHO05D005394 9.4e-14 82.4 91 36.3
SalBow6G7263 Salvia bowleyana HOM05D004312 ORTHO05D005394 9.4e-14 82.4 91 36.3
SalBow1G3580 Salvia bowleyana HOM05D004312 ORTHO05D005394 1.4e-12 78.6 91 35.2
Aa31LG8G7490 Aethionema arabicum HOM05D004312 ORTHO05D005394 1.4e-09 68.6 103 30.1
BcaC05g28286 Brassica carinata HOM05D002786 ORTHO05D005394 3.1e-09 67.4 139 26.6
TWI63G0393 Tripterygium wilfordii HOM05D005151 ORTHO05D006322 3.2e-06 57.4 155 29.0
CANSAT56G1855 Cannabis sativa HOM05D005151 ORTHO05D006322 5.5e-06 56.6 162 29.0


User provided reference genes

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