Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PRCOL_00000740 Prasinoderma coloniale HOM05D005979 ORTHO05D007848 7.3e-161 570.5 282 100.0
Cre15.g636300 Chlamydomonas reinhardtii HOM05D005979 ORTHO05D007848 2.3e-77 293.1 277 56.3
MCO14G471 Micromonas commoda HOM05D005979 ORTHO05D007848 1.8e-74 283.5 281 50.9
Pp3c13_18250 Physcomitrium patens HOM05D005979 ORTHO05D007848 5.7e-73 278.5 257 54.1
Mapoly0016s0206 Marchantia polymorpha HOM05D005979 ORTHO05D007848 2.4e-71 273.1 272 51.5
AagrBONN_evm.TU.Sc2ySwM_228.4763 Anthoceros agrestis HOM05D005979 ORTHO05D007848 1.1e-60 237.7 324 41.4
BraA05t22680Z Brassica rapa HOM05D005979 ORTHO05D007848 2.6e-57 226.5 239 47.7
CBR_g30186 Chara braunii HOM05D005979 ORTHO05D007848 3.4e-57 226.1 277 44.8
A05p38880 Brassica napus HOM05D005979 ORTHO05D007848 7.5e-57 224.9 239 47.3
BolC5t34447H Brassica oleracea HOM05D005979 ORTHO05D007848 7.5e-57 224.9 253 47.0
C05p57920 Brassica napus HOM05D005979 ORTHO05D007848 6.4e-56 221.9 253 47.0
Aa31LG3G2790 Aethionema arabicum HOM05D005979 ORTHO05D007848 2.4e-55 219.9 240 48.3
BcaB04g21222 Brassica carinata HOM05D005979 ORTHO05D007848 2.4e-55 219.9 239 46.9
BcaNung05525 Brassica carinata HOM05D005979 ORTHO05D007848 2.4e-55 219.9 253 46.2
DCAR_001099 Daucus carota HOM05D005979 ORTHO05D007848 2.4e-55 219.9 238 47.1
Gorai.013G116500 Gossypium raimondii HOM05D005979 ORTHO05D007848 1.2e-54 217.6 239 46.4
Os04g0692100 Oryza sativa ssp. japonica HOM05D005979 ORTHO05D007848 1.2e-54 217.6 240 47.9
CARHR084710 Cardamine hirsuta HOM05D005979 ORTHO05D007848 1.6e-54 217.2 240 47.1
CSS0035132 Camellia sinensis var. sinensis HOM05D005979 ORTHO05D007848 2.7e-54 216.5 241 46.9
Gohir.A13G100300 Gossypium hirsutum HOM05D005979 ORTHO05D007848 2.7e-54 216.5 239 46.9
Thecc.05G139000 Theobroma cacao HOM05D005979 ORTHO05D007848 2.7e-54 216.5 239 48.5
Cpa.g.sc5.208 Carica papaya HOM05D005979 ORTHO05D007848 3.5e-54 216.1 241 46.9
Sp3g08500 Schrenkiella parvula HOM05D005979 ORTHO05D007848 3.5e-54 216.1 239 46.0
THA.LOC104823212 Tarenaya hassleriana HOM05D005979 ORTHO05D007848 3.5e-54 216.1 254 47.2
Sopen03g028870 Solanum pennellii HOM05D005979 ORTHO05D007848 4.6e-54 215.7 242 47.1
Sc18g0002150 Simmondsia chinensis HOM05D005979 ORTHO05D007848 6.0e-54 215.3 236 47.5
PGSC0003DMG400031053 Solanum tuberosum HOM05D005979 ORTHO05D007848 6.0e-54 215.3 242 47.5
Aqoxy2G00350 Aquilegia oxysepala HOM05D005979 ORTHO05D007848 7.8e-54 214.9 236 46.6
CiPaw.09G046000 Carya illinoinensis HOM05D005979 ORTHO05D007848 1.0e-53 214.5 241 46.9
Zm00001eb076570 Zea mays HOM05D005979 ORTHO05D007848 1.0e-53 214.5 281 44.5
Dinv35473 Davidia involucrata HOM05D005979 ORTHO05D007848 1.3e-53 214.2 241 47.3
Thhalv10021412m.g Eutrema salsugineum HOM05D005979 ORTHO05D007848 1.3e-53 214.2 239 46.4
Medtr1g051215 Medicago truncatula HOM05D005979 ORTHO05D007848 1.3e-53 214.2 238 48.7
Ciclev10021922m.g Citrus clementina HOM05D005979 ORTHO05D007848 1.7e-53 213.8 237 46.8
FAN17G0168 Fragaria x ananassa HOM05D005979 ORTHO05D007848 1.7e-53 213.8 237 48.5
TWI77G1019 Tripterygium wilfordii HOM05D005979 ORTHO05D007848 1.7e-53 213.8 241 46.1
Gohir.D13G103900 Gossypium hirsutum HOM05D005979 ORTHO05D007848 2.3e-53 213.4 239 46.0
HanXRQChr05g0144951 Helianthus annuus HOM05D005979 ORTHO05D007848 2.3e-53 213.4 262 45.4
Ah.09g228190 Amaranthus hybridus HOM05D005979 ORTHO05D007848 3.0e-53 213.0 237 46.0
ClCG09G016040 Citrullus lanatus HOM05D005979 ORTHO05D007848 3.9e-53 212.6 251 45.8
CsaV3_4G027840 Cucumis sativus L. HOM05D005979 ORTHO05D007848 3.9e-53 212.6 251 45.4
RcHm_v2.0_Chr4g0414381 Rosa chinensis HOM05D005979 ORTHO05D007848 3.9e-53 212.6 239 47.7
Solyc03g098170.3 Solanum lycopersicum HOM05D005979 ORTHO05D007848 3.9e-53 212.6 242 46.7
VMungo0251G0166 Vigna mungo HOM05D005979 ORTHO05D007848 3.9e-53 212.6 240 48.3
Actinidia40001 Actinidia chinensis HOM05D005979 ORTHO05D007848 5.1e-53 212.2 241 47.7
Nn7g36654 Nelumbo nucifera HOM05D005979 ORTHO05D007848 5.1e-53 212.2 237 46.4
Duzib093G1926 Durio zibethinus HOM05D005979 ORTHO05D007848 6.6e-53 211.8 237 47.3
ECA232G1805 Erigeron canadensis HOM05D005979 ORTHO05D007848 6.6e-53 211.8 241 47.3
Eucgr.K01638 Eucalyptus grandis HOM05D005979 ORTHO05D007848 6.6e-53 211.8 245 46.1
FvH4_4g13730 Fragaria vesca HOM05D005979 ORTHO05D007848 6.6e-53 211.8 237 47.3
FAN12G2831 Fragaria x ananassa HOM05D005979 ORTHO05D007848 6.6e-53 211.8 237 47.3
Lsat_1_v5_gn_0_460 Lactuca sativa HOM05D005979 ORTHO05D007848 6.6e-53 211.8 240 47.5
TPR.G19644 Trifolium pratense HOM05D005979 ORTHO05D007848 6.6e-53 211.8 238 47.5
Medtr0004s0600 Medicago truncatula HOM05D005979 ORTHO05D007848 8.6e-53 211.5 237 47.7
RcHm_v2.0_Chr6g0280571 Rosa chinensis HOM05D005979 ORTHO05D007848 8.6e-53 211.5 235 48.1
Carub.0003s0939 Capsella rubella HOM05D005979 ORTHO05D007848 1.1e-52 211.1 239 46.0
MD04G1012500 Malus domestica HOM05D005979 ORTHO05D007848 1.1e-52 211.1 238 46.2
Prupe.7G257800 Prunus persica HOM05D005979 ORTHO05D007848 1.1e-52 211.1 237 46.8
CANSAT64G2596 Cannabis sativa HOM05D005979 ORTHO05D007848 1.5e-52 210.7 239 45.2
CAN.G637.20 Capsicum annuum HOM05D005979 ORTHO05D007848 1.5e-52 210.7 238 47.9
Lj5g0020498 Lotus japonicus HOM05D005979 ORTHO05D007848 1.5e-52 210.7 237 48.1
Oeu013750.3 Olea europaea HOM05D005979 ORTHO05D007848 1.5e-52 210.7 270 43.0
unitig_0.g99 Utricularia gibba HOM05D005979 ORTHO05D007848 1.9e-52 210.3 241 46.5
Glyma.05G203800 Glycine max HOM05D005979 ORTHO05D007848 3.3e-52 209.5 237 46.8
AT3G10220 Arabidopsis thaliana HOM05D005979 ORTHO05D007848 4.3e-52 209.1 239 45.6
Potri.006G041400 Populus trichocarpa HOM05D005979 ORTHO05D007848 4.3e-52 209.1 236 45.8
Lalb_Chr02g0156521 Lupinus albus HOM05D005979 ORTHO05D007848 5.6e-52 208.8 252 47.2
Migut.B00389 Erythranthe guttata HOM05D005979 ORTHO05D007848 9.5e-52 208.0 241 45.6
Manes.09G007200 Manihot esculenta HOM05D005979 ORTHO05D007848 1.2e-51 207.6 239 46.4
AL3G21560 Arabidopsis lyrata HOM05D005979 ORTHO05D007848 1.6e-51 207.2 239 45.2
vmacro19992 Vaccinium macrocarpon HOM05D005979 ORTHO05D007848 1.6e-51 207.2 268 44.0
GSVIVG01033606001 Vitis vinifera HOM05D005979 ORTHO05D007848 1.6e-51 207.2 238 45.4
Sed0017937 Sechium edule HOM05D005979 ORTHO05D007848 2.1e-51 206.8 251 45.4
Psat6g123280 Pisum sativum HOM05D005979 ORTHO05D007848 2.8e-51 206.5 237 47.3
AUR62033954 Chenopodium quinoa HOM05D005979 ORTHO05D007848 3.6e-51 206.1 237 47.7
Cfa016688 Carpinus fangiana HOM05D005979 ORTHO05D007848 4.7e-51 205.7 241 45.2
MBI09_g07121_MAGBIO Magnolia biondii HOM05D005979 ORTHO05D007848 4.7e-51 205.7 239 44.8
QL07p008776 Quercus lobata HOM05D005979 ORTHO05D007848 6.2e-51 205.3 248 44.4
Phvul.002G285700 Phaseolus vulgaris HOM05D005979 ORTHO05D007848 8.1e-51 204.9 241 46.1
COL.COLO4_00190 Corchorus olitorius HOM05D005979 ORTHO05D007848 1.8e-50 203.8 241 44.8
Gohir.D04G132100 Gossypium hirsutum HOM05D005979 ORTHO05D007848 3.1e-50 203.0 239 44.4
CDE06G1795 Ceratophyllum demersum HOM05D005979 ORTHO05D007848 5.2e-50 202.2 240 45.0
MELO3C019044.2 Cucumis melo HOM05D005979 ORTHO05D007848 5.2e-50 202.2 230 46.1
ATR1134G092 Amborella trichopoda HOM05D005979 ORTHO05D007848 6.8e-50 201.8 240 45.8
TAR633G0311 Trochodendron aralioides HOM05D005979 ORTHO05D007848 6.8e-50 201.8 238 43.3
Atru.chr1.1490 Acer truncatum HOM05D005979 ORTHO05D007848 8.9e-50 201.4 241 44.4
Cc02_g19250 Coffea canephora HOM05D005979 ORTHO05D007848 1.2e-49 201.1 243 44.0
HPP92_006862 Vanilla planifolia HOM05D005979 ORTHO05D007848 2.6e-49 199.9 240 42.5
Ca_23806_v3 Cicer arietinum L. HOM05D005979 ORTHO05D007848 5.8e-49 198.7 238 45.4
HPP92_006880 Vanilla planifolia HOM05D005979 ORTHO05D007848 5.8e-49 198.7 240 42.1
CDE08G1123 Ceratophyllum demersum HOM05D005979 ORTHO05D007848 9.9e-49 198.0 240 44.6
Hund26899 Selenicereus undatus HOM05D005979 ORTHO05D007848 1.3e-48 197.6 244 44.3
Rhsim05G0172800 Rhododendron simsii HOM05D005979 ORTHO05D007848 1.7e-48 197.2 283 40.3
Hma1.2p1_0075F.1_g039230 Hydrangea macrophylla HOM05D005979 ORTHO05D007848 2.2e-48 196.8 234 44.4
arahy.Tifrunner.gnm1.ann1.Y5SS6T Arachis hypogaea HOM05D005979 ORTHO05D007848 1.4e-47 194.1 238 45.4
SGA_v2.0_scaffold32G13036 Striga asiatica HOM05D005979 ORTHO05D007848 4.1e-47 192.6 273 41.4
Haze_19714 Corylus avellana HOM05D005979 ORTHO05D007848 2.7e-46 189.9 212 47.2
Prupe.1G158700 Prunus persica HOM05D005979 ORTHO05D007848 2.3e-45 186.8 213 46.9
SalBow6G2287 Salvia bowleyana HOM05D005979 ORTHO05D007848 3.9e-45 186.0 255 40.8
PSO170G5780 Papaver somniferum HOM05D005979 ORTHO05D007848 6.6e-45 185.3 214 45.3
Nitab4.5_0001180g0050 Nicotiana tabacum HOM05D005979 ORTHO05D007848 4.3e-44 182.6 290 38.3
EL10Ac8g19200 Beta vulgaris HOM05D005979 ORTHO05D007848 1.1e-42 177.9 254 39.0
Gorai.012G115900 Gossypium raimondii HOM05D005979 ORTHO05D007848 1.2e-41 174.5 207 44.0
COL.COLO4_36506 Corchorus olitorius HOM05D005979 ORTHO05D007848 2.0e-41 173.7 211 45.0
Nitab4.5_0003715g0020 Nicotiana tabacum HOM05D005979 ORTHO05D007848 2.6e-41 173.3 237 40.5
Lj2A41G64 Lonicera japonica HOM05D005979 ORTHO05D007848 4.2e-39 166.0 239 40.6
AUR62029060 Chenopodium quinoa HOM05D005979 ORTHO05D007848 3.0e-29 133.3 237 36.3
Gohir.A04G092832 Gossypium hirsutum HOM05D005979 ORTHO05D007848 3.1e-26 123.2 125 48.0
Nitab4.5_0005200g0020 Nicotiana tabacum HOM05D005979 ORTHO05D007848 1.9e-23 114.0 109 52.3
BcaC09g48108 Brassica carinata HOM05D005979 ORTHO05D007848 6.0e-22 109.0 130 43.1
Peaxi162Scf00171g00620 Petunia axillaris HOM05D005979 ORTHO05D007848 1.9e-20 104.0 173 41.0
Nitab4.5_0005200g0030 Nicotiana tabacum HOM05D005979 ORTHO05D007848 6.9e-18 95.5 72 59.7
AUR62032907 Chenopodium quinoa HOM05D005979 ORTHO05D007848 9.0e-18 95.1 220 34.1
Sabra06G0028100 Salix brachista HOM05D005979 ORTHO05D007848 9.0e-18 95.1 103 42.7
COL.COLO4_00246 Corchorus olitorius HOM05D005979 ORTHO05D007848 2.1e-14 84.0 91 49.5
SEGI_39367 Sequoiadendron giganteum HOM05D005979 ORTHO05D007848 7.6e-09 65.5 56 51.8
SEGI_37896 Sequoiadendron giganteum HOM05D005979 ORTHO05D007848 1.0e-08 65.1 62 46.8
Cfa025444 Carpinus fangiana HOM05D005979 ORTHO05D122864 3.2e-07 60.1 68 42.6
FAN03G2583 Fragaria x ananassa HOM05D005979 ORTHO05D007848 3.2e-07 60.1 71 46.5
FAN08G3312 Fragaria x ananassa HOM05D005979 ORTHO05D007848 3.2e-07 60.1 71 46.5


User provided reference genes

Program Settings