Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PRCOL_00000489 Prasinoderma coloniale HOM05D004755 ORTHO05D006137 0.0e+00 1342.4 820 100.0
BcaC01g03670 Brassica carinata HOM05D004755 ORTHO05D006137 2.3e-50 204.9 800 26.8
SMO146G0209 Selaginella moellendorffii HOM05D004755 ORTHO05D006137 1.2e-49 202.6 636 28.6
Hund06220 Selenicereus undatus HOM05D004755 ORTHO05D006137 1.3e-48 199.1 788 27.0
MCO13G192 Micromonas commoda HOM05D004755 ORTHO05D006137 4.1e-47 194.1 856 34.0
CBR_g24445 Chara braunii HOM05D004755 ORTHO05D006137 1.7e-45 188.7 798 34.3
Nitab4.5_0004280g0140 Nicotiana tabacum HOM05D004755 ORTHO05D006137 6.6e-45 186.8 794 25.8
Pp3c13_21390 Physcomitrium patens HOM05D004755 ORTHO05D006137 2.1e-43 181.8 820 29.5
AagrBONN_evm.TU.Sc2ySwM_368.721 Anthoceros agrestis HOM05D004755 ORTHO05D006137 1.8e-42 178.7 684 27.8
Cre09.g389912 Chlamydomonas reinhardtii HOM05D004755 ORTHO05D006137 1.8e-42 178.7 916 30.7
Sabra04G0100200 Salix brachista HOM05D004755 ORTHO05D006137 8.9e-42 176.4 788 25.6
Nitab4.5_0004287g0030 Nicotiana tabacum HOM05D004755 ORTHO05D006137 3.4e-41 174.5 779 25.2
Mapoly0131s0025 Marchantia polymorpha HOM05D004755 ORTHO05D006137 4.2e-39 167.5 797 30.2
QL11p042321 Quercus lobata HOM05D004755 ORTHO05D006137 3.5e-38 164.5 852 23.9
SalBow6G2421 Salvia bowleyana HOM05D004755 ORTHO05D006137 4.6e-38 164.1 481 29.1
Haze_02419 Corylus avellana HOM05D004755 ORTHO05D006137 5.1e-37 160.6 692 25.4
EL10Ac9g21762 Beta vulgaris HOM05D004755 ORTHO05D006137 1.1e-36 159.5 825 24.7
Migut.B00268 Erythranthe guttata HOM05D004755 ORTHO05D006137 1.9e-36 158.7 789 25.5
C05p46570 Brassica napus HOM05D004755 ORTHO05D006137 2.4e-34 151.8 785 25.2
BolC5t33386H Brassica oleracea HOM05D004755 ORTHO05D006137 2.4e-34 151.8 785 25.2
Potri.T125104 Populus trichocarpa HOM05D004755 ORTHO05D006137 2.4e-34 151.8 787 24.4
ECA240G4701 Erigeron canadensis HOM05D004755 ORTHO05D006137 3.1e-34 151.4 652 29.9
Potri.009G112184 Populus trichocarpa HOM05D004755 ORTHO05D006137 3.1e-34 151.4 787 24.5
ClCG02G005310 Citrullus lanatus HOM05D004755 ORTHO05D006137 6.9e-34 150.2 846 24.9
Sp3g16960 Schrenkiella parvula HOM05D004755 ORTHO05D006137 2.0e-33 148.7 785 25.1
Aa31LG8G5700 Aethionema arabicum HOM05D004755 ORTHO05D006137 3.4e-33 147.9 790 24.6
CARHR094310 Cardamine hirsuta HOM05D004755 ORTHO05D006137 3.4e-33 147.9 786 24.9
Prupe.8G104600 Prunus persica HOM05D004755 ORTHO05D006137 3.4e-33 147.9 792 25.1
COL.COLO4_32463 Corchorus olitorius HOM05D004755 ORTHO05D006137 4.4e-33 147.5 795 24.7
Dinv23556 Davidia involucrata HOM05D004755 ORTHO05D006137 4.4e-33 147.5 661 24.5
HanXRQChr08g0216571 Helianthus annuus HOM05D004755 ORTHO05D006137 4.4e-33 147.5 788 27.4
Actinidia00497 Actinidia chinensis HOM05D004755 ORTHO05D006137 5.8e-33 147.1 788 24.2
BraA05t21911Z Brassica rapa HOM05D004755 ORTHO05D006137 5.8e-33 147.1 785 24.5
Sc18g0004710 Simmondsia chinensis HOM05D004755 ORTHO05D006137 5.8e-33 147.1 422 30.1
THA.LOC104798811 Tarenaya hassleriana HOM05D004755 ORTHO05D006137 7.6e-33 146.7 785 24.3
AL3G32250 Arabidopsis lyrata HOM05D004755 ORTHO05D006137 9.9e-33 146.4 821 24.0
Carub.0003s1870 Capsella rubella HOM05D004755 ORTHO05D006137 9.9e-33 146.4 787 24.7
DCAR_022097 Daucus carota HOM05D004755 ORTHO05D006137 1.3e-32 146.0 420 29.8
Aqoxy5G01708 Aquilegia oxysepala HOM05D004755 ORTHO05D006137 2.9e-32 144.8 427 29.3
Gorai.012G146700 Gossypium raimondii HOM05D004755 ORTHO05D006137 2.9e-32 144.8 830 24.3
PSO170G5490 Papaver somniferum HOM05D004755 ORTHO05D006137 2.9e-32 144.8 418 29.2
BcaB06g25940 Brassica carinata HOM05D004755 ORTHO05D006137 3.8e-32 144.4 789 24.6
Thhalv10020129m.g Eutrema salsugineum HOM05D004755 ORTHO05D006137 3.8e-32 144.4 784 24.6
AT3G18860 Arabidopsis thaliana HOM05D004755 ORTHO05D006137 6.4e-32 143.7 786 24.4
FvH4_2g08030 Fragaria vesca HOM05D004755 ORTHO05D006137 6.4e-32 143.7 790 24.2
MD10G1082200 Malus domestica HOM05D004755 ORTHO05D006137 6.4e-32 143.7 791 24.7
TPR.G28052 Trifolium pratense HOM05D004755 ORTHO05D006137 1.4e-31 142.5 687 24.0
Sabra09G0085600 Salix brachista HOM05D004755 ORTHO05D006137 2.4e-31 141.7 787 24.1
Sed0014712 Sechium edule HOM05D004755 ORTHO05D006137 2.4e-31 141.7 817 24.2
Cfa004975 Carpinus fangiana HOM05D004755 ORTHO05D006137 3.2e-31 141.4 789 24.1
RcHm_v2.0_Chr6g0262551 Rosa chinensis HOM05D004755 ORTHO05D006137 3.2e-31 141.4 790 23.9
A03p40880 Brassica napus HOM05D004755 ORTHO05D006137 4.2e-31 141.0 821 23.5
BraA03t13246Z Brassica rapa HOM05D004755 ORTHO05D006137 4.2e-31 141.0 821 23.5
Lsat_1_v5_gn_9_109321 Lactuca sativa HOM05D004755 ORTHO05D006137 4.2e-31 141.0 654 28.9
HPP92_001848 Vanilla planifolia HOM05D004755 ORTHO05D006137 5.4e-31 140.6 422 29.1
A05p30690 Brassica napus HOM05D004755 ORTHO05D006137 7.1e-31 140.2 785 24.3
Gohir.D04G159300 Gossypium hirsutum HOM05D004755 ORTHO05D006137 7.1e-31 140.2 833 24.0
PSO700G0113 Papaver somniferum HOM05D004755 ORTHO05D006137 7.1e-31 140.2 418 28.7
AUR62011360 Chenopodium quinoa HOM05D004755 ORTHO05D006137 1.2e-30 139.4 826 24.5
AUR62016701 Chenopodium quinoa HOM05D004755 ORTHO05D006137 1.6e-30 139.0 785 24.5
Eucgr.I01243 Eucalyptus grandis HOM05D004755 ORTHO05D006137 1.6e-30 139.0 421 29.7
Medtr4g069090 Medicago truncatula HOM05D004755 ORTHO05D006137 1.6e-30 139.0 418 28.0
Rhsim11G0173300 Rhododendron simsii HOM05D004755 ORTHO05D006137 1.6e-30 139.0 660 24.1
CsaV3_7G010210 Cucumis sativus L. HOM05D004755 ORTHO05D006137 2.1e-30 138.7 794 28.3
Peaxi162Scf00016g01034 Petunia axillaris HOM05D004755 ORTHO05D006137 2.1e-30 138.7 421 28.7
CSS0003833 Camellia sinensis var. sinensis HOM05D004755 ORTHO05D006137 2.7e-30 138.3 799 23.7
CSS0019785 Camellia sinensis var. sinensis HOM05D004755 ORTHO05D006137 2.7e-30 138.3 799 23.7
FAN24G1877 Fragaria x ananassa HOM05D004755 ORTHO05D006137 2.7e-30 138.3 682 25.1
ATR0733G059 Amborella trichopoda HOM05D004755 ORTHO05D006137 3.5e-30 137.9 424 29.7
BolC3t17278H Brassica oleracea HOM05D004755 ORTHO05D006137 3.5e-30 137.9 774 23.8
Cc02_g17900 Coffea canephora HOM05D004755 ORTHO05D006137 6.0e-30 137.1 791 23.3
MBI16_g13149_MAGBIO Magnolia biondii HOM05D004755 ORTHO05D006137 6.0e-30 137.1 784 23.2
PGR142G0564 Punica granatum HOM05D004755 ORTHO05D006137 6.0e-30 137.1 420 29.8
CAN.G322.107 Capsicum annuum HOM05D004755 ORTHO05D006137 7.8e-30 136.7 797 23.3
MELO3C018404.2 Cucumis melo HOM05D004755 ORTHO05D006137 7.8e-30 136.7 793 28.2
Nn5g29490 Nelumbo nucifera HOM05D004755 ORTHO05D006137 1.0e-29 136.3 788 23.4
VMungo1127G1904 Vigna mungo HOM05D004755 ORTHO05D006137 1.0e-29 136.3 788 23.1
Zm00001eb299230 Zea mays HOM05D004755 ORTHO05D006137 1.0e-29 136.3 527 26.0
Atru.chr5.2935 Acer truncatum HOM05D004755 ORTHO05D006137 1.3e-29 136.0 418 28.5
Gohir.A04G117600 Gossypium hirsutum HOM05D004755 ORTHO05D006137 1.3e-29 136.0 830 23.9
Phvul.011G047700 Phaseolus vulgaris HOM05D004755 ORTHO05D006137 1.3e-29 136.0 788 23.0
C03p49850 Brassica napus HOM05D004755 ORTHO05D006137 2.3e-29 135.2 808 23.9
Ah.01g006160 Amaranthus hybridus HOM05D004755 ORTHO05D006137 3.0e-29 134.8 795 23.4
Lalb_Chr03g0025821 Lupinus albus HOM05D004755 ORTHO05D006137 6.6e-29 133.7 422 27.5
Potri.004G150700 Populus trichocarpa HOM05D004755 ORTHO05D006137 6.6e-29 133.7 789 23.3
Ciclev10027868m.g Citrus clementina HOM05D004755 ORTHO05D006137 8.7e-29 133.3 790 23.2
Glyma.11G120700 Glycine max HOM05D004755 ORTHO05D006137 8.7e-29 133.3 823 22.8
GSVIVG01031913001 Vitis vinifera HOM05D004755 ORTHO05D006137 8.7e-29 133.3 797 23.0
Glyma.12G045800 Glycine max HOM05D004755 ORTHO05D006137 1.1e-28 132.9 788 23.1
Lalb_Chr01g0002741 Lupinus albus HOM05D004755 ORTHO05D006137 1.1e-28 132.9 418 26.8
CiPaw.05G060900 Carya illinoinensis HOM05D004755 ORTHO05D006137 1.5e-28 132.5 828 21.9
Duzib132G0528 Durio zibethinus HOM05D004755 ORTHO05D006137 1.5e-28 132.5 795 23.6
FAN15G3513 Fragaria x ananassa HOM05D004755 ORTHO05D006137 1.5e-28 132.5 797 23.6
Psat7g185120 Pisum sativum HOM05D004755 ORTHO05D006137 4.3e-28 131.0 811 22.3
Sopen01g051540 Solanum pennellii HOM05D004755 ORTHO05D006137 4.3e-28 131.0 794 22.9
arahy.Tifrunner.gnm1.ann1.CRQ4KQ Arachis hypogaea HOM05D004755 ORTHO05D006137 7.3e-28 130.2 786 22.9
Lj5A201G28 Lonicera japonica HOM05D004755 ORTHO05D006137 7.3e-28 130.2 420 28.8
Solyc01g109350.3 Solanum lycopersicum HOM05D004755 ORTHO05D006137 7.3e-28 130.2 794 22.9
Thecc.02G121800 Theobroma cacao HOM05D004755 ORTHO05D006137 7.3e-28 130.2 827 23.0
Lj3g0013592 Lotus japonicus HOM05D004755 ORTHO05D006137 9.6e-28 129.8 814 22.5
arahy.Tifrunner.gnm1.ann1.A0G0F1 Arachis hypogaea HOM05D004755 ORTHO05D006137 1.6e-27 129.0 786 22.8
Manes.17G099000 Manihot esculenta HOM05D004755 ORTHO05D006137 1.6e-27 129.0 788 23.2
Os07g0123700 Oryza sativa ssp. japonica HOM05D004755 ORTHO05D006137 1.6e-27 129.0 858 22.3
Lsat_1_v5_gn_9_93780 Lactuca sativa HOM05D004755 ORTHO05D006137 4.8e-27 127.5 135 48.1
TWI75G0180 Tripterygium wilfordii HOM05D004755 ORTHO05D006137 1.1e-26 126.3 796 22.6
unitig_746.g26712 Utricularia gibba HOM05D004755 ORTHO05D006137 1.4e-26 125.9 457 28.0
FAN20G2502 Fragaria x ananassa HOM05D004755 ORTHO05D006137 6.9e-26 123.6 805 23.5
SHI05427 Sapria himalayana HOM05D004755 ORTHO05D006137 9.0e-26 123.2 147 42.2
Oeu010556.1 Olea europaea HOM05D004755 ORTHO05D006137 2.6e-25 121.7 538 25.5
Cpa.g.sc62.108 Carica papaya HOM05D004755 ORTHO05D006137 3.4e-25 121.3 461 27.1
BcaNung06950 Brassica carinata HOM05D004755 ORTHO05D006137 2.9e-24 118.2 387 30.5
FAN02G3646 Fragaria x ananassa HOM05D004755 ORTHO05D006137 1.9e-23 115.5 131 45.8
TAR628G0908 Trochodendron aralioides HOM05D004755 ORTHO05D006137 2.4e-23 115.2 785 22.5
vmacro02143 Vaccinium macrocarpon HOM05D004755 ORTHO05D006137 5.4e-23 114.0 809 21.9
Cfa023312 Carpinus fangiana HOM05D004755 ORTHO05D006137 2.7e-22 111.7 800 24.6
QL11p041571 Quercus lobata HOM05D005713 ORTHO05D007751 9.6e-20 103.2 110 45.5
QL11p041479 Quercus lobata HOM05D004755 ORTHO05D006137 1.4e-18 99.4 245 30.2
Ca_20846_v3 Cicer arietinum L. HOM05D004755 ORTHO05D006137 8.4e-16 90.1 87 51.7
SEGI_27412 Sequoiadendron giganteum HOM05D004755 ORTHO05D006137 2.3e-13 82.0 83 50.6
SGA_v2.0_scaffold58G20570 Striga asiatica HOM05D004755 ORTHO05D006137 3.9e-13 81.3 754 25.5
CBR_g48759 Chara braunii HOM05D017291 ORTHO05D017328 6.2e-11 73.9 209 31.6
Cre10.g433450 Chlamydomonas reinhardtii HOM05D017291 ORTHO05D017328 7.6e-09 67.0 151 31.8
C07p48580 Brassica napus HOM05D003606 ORTHO05D004650 5.5e-07 60.8 224 29.5
Hma1.2p1_0066F.1_g036770 Hydrangea macrophylla HOM05D004755 ORTHO05D006137 5.5e-07 60.8 337 23.4
BolC7t45366H Brassica oleracea HOM05D003606 ORTHO05D004650 7.1e-07 60.5 224 29.5
Glyma.07G100800 Glycine max HOM05D002288 ORTHO05D002894 2.1e-06 58.9 276 27.2
vmacro16948 Vaccinium macrocarpon HOM05D001315 ORTHO05D001618 2.1e-06 58.9 136 34.6
vmacro16947 Vaccinium macrocarpon HOM05D001315 ORTHO05D001618 3.5e-06 58.2 136 33.8


User provided reference genes

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