Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PRCOL_00000230 Prasinoderma coloniale HOM05D005745 ORTHO05D006857 1.1e-293 1012.7 546 100.0
MCO02G004 Micromonas commoda HOM05D005745 ORTHO05D006857 2.0e-37 161.4 486 35.0
HanXRQChr04g0121611 Helianthus annuus HOM05D005745 ORTHO05D006857 3.5e-26 124.0 407 31.2
Lj7C516G5 Lonicera japonica HOM05D005745 ORTHO05D006857 3.0e-25 120.9 412 30.6
AagrBONN_evm.TU.Sc2ySwM_362.160 Anthoceros agrestis HOM05D005745 ORTHO05D006857 3.9e-25 120.6 351 33.6
Sopen05g028140 Solanum pennellii HOM05D005745 ORTHO05D006857 3.9e-25 120.6 424 30.7
Lsat_1_v5_gn_7_5060 Lactuca sativa HOM05D005745 ORTHO05D006857 1.5e-24 118.6 421 30.2
Duzib138G1514 Durio zibethinus HOM05D005745 ORTHO05D006857 1.9e-24 118.2 392 31.9
QL08p049437 Quercus lobata HOM05D005745 ORTHO05D006857 1.9e-24 118.2 424 30.9
GSVIVG01026870001 Vitis vinifera HOM05D005745 ORTHO05D006857 9.5e-24 115.9 427 30.9
VMungo0331G1900 Vigna mungo HOM05D005745 ORTHO05D006857 2.1e-23 114.8 426 30.3
Medtr8g031440 Medicago truncatula HOM05D005745 ORTHO05D006857 2.8e-23 114.4 419 29.6
Hma1.2p1_0001F.1_g001520 Hydrangea macrophylla HOM05D005745 ORTHO05D006857 3.6e-23 114.0 423 29.8
ECA236G3051 Erigeron canadensis HOM05D005745 ORTHO05D006857 4.7e-23 113.6 426 29.1
Sed0009525 Sechium edule HOM05D005745 ORTHO05D006857 4.7e-23 113.6 395 29.9
Manes.01G259400 Manihot esculenta HOM05D005745 ORTHO05D006857 1.4e-22 112.1 419 28.9
Potri.014G081400 Populus trichocarpa HOM05D005745 ORTHO05D006857 1.4e-22 112.1 405 30.1
Solyc05g048810.4 Solanum lycopersicum HOM05D005745 ORTHO05D006857 1.4e-22 112.1 421 30.2
Sabra14G0059300 Salix brachista HOM05D005745 ORTHO05D006857 1.8e-22 111.7 423 30.3
Lj3g0021692 Lotus japonicus HOM05D005745 ORTHO05D006857 2.4e-22 111.3 414 30.0
SGA_v2.0_scaffold277G46666 Striga asiatica HOM05D005745 ORTHO05D006857 2.4e-22 111.3 416 30.5
Actinidia10034 Actinidia chinensis HOM05D005745 ORTHO05D006857 4.0e-22 110.5 430 30.0
CANSAT56G0536 Cannabis sativa HOM05D005745 ORTHO05D006857 4.0e-22 110.5 436 29.8
Nn6g33496 Nelumbo nucifera HOM05D005745 ORTHO05D006857 4.0e-22 110.5 418 29.9
Ciclev10020429m.g Citrus clementina HOM05D005745 ORTHO05D006857 6.8e-22 109.8 421 30.2
Oeu056358.1 Olea europaea HOM05D005745 ORTHO05D006857 6.8e-22 109.8 418 30.4
TAR367G0002 Trochodendron aralioides HOM05D005745 ORTHO05D006857 6.8e-22 109.8 429 28.4
PSO782G5186 Papaver somniferum HOM05D005745 ORTHO05D006857 1.2e-21 109.0 420 29.5
Actinidia20926 Actinidia chinensis HOM05D005745 ORTHO05D006857 1.5e-21 108.6 430 29.5
Mapoly0023s0060 Marchantia polymorpha HOM05D005745 ORTHO05D006857 2.0e-21 108.2 573 28.1
PGSC0003DMG400021653 Solanum tuberosum HOM05D005745 ORTHO05D006857 2.6e-21 107.8 424 30.0
Haze_15472 Corylus avellana HOM05D005745 ORTHO05D006857 3.4e-21 107.5 436 30.3
Aqoxy7G00357 Aquilegia oxysepala HOM05D005745 ORTHO05D006857 1.7e-20 105.1 419 28.6
CAN.G1535.1 Capsicum annuum HOM05D005745 ORTHO05D006857 2.2e-20 104.8 418 29.7
DCAR_015932 Daucus carota HOM05D005745 ORTHO05D006857 2.9e-20 104.4 434 28.6
Pp3c4_14060 Physcomitrium patens HOM05D005745 ORTHO05D006857 4.9e-20 103.6 473 30.0
PSO478G4474 Papaver somniferum HOM05D005745 ORTHO05D006857 6.4e-20 103.2 435 28.7
arahy.Tifrunner.gnm1.ann1.JLYP5G Arachis hypogaea HOM05D005745 ORTHO05D006857 8.4e-20 102.8 470 27.2
TWI23G0914 Tripterygium wilfordii HOM05D005745 ORTHO05D006857 8.4e-20 102.8 419 29.8
Peaxi162Scf00191g01322 Petunia axillaris HOM05D005745 ORTHO05D006857 1.1e-19 102.4 437 29.1
Ca_23656_v3 Cicer arietinum L. HOM05D005745 ORTHO05D006857 1.4e-19 102.1 420 28.6
AT1G01760 Arabidopsis thaliana HOM05D005745 ORTHO05D006857 1.9e-19 101.7 431 29.7
arahy.Tifrunner.gnm1.ann1.5YG8M2 Arachis hypogaea HOM05D005745 ORTHO05D006857 1.9e-19 101.7 423 28.1
Cc02_g37770 Coffea canephora HOM05D005745 ORTHO05D006857 1.9e-19 101.7 427 29.5
Nitab4.5_0007346g0010 Nicotiana tabacum HOM05D005745 ORTHO05D006857 3.2e-19 100.9 439 28.2
ClCG06G003860 Citrullus lanatus HOM05D005745 ORTHO05D006857 4.2e-19 100.5 424 29.2
CsaV3_6G000430 Cucumis sativus L. HOM05D005745 ORTHO05D006857 5.4e-19 100.1 419 29.4
Cpa.g.sc18.234 Carica papaya HOM05D005745 ORTHO05D006857 7.1e-19 99.8 413 30.3
MBI17_g21972_MAGBIO Magnolia biondii HOM05D005745 ORTHO05D006857 7.1e-19 99.8 358 28.5
Rhsim07G0017300 Rhododendron simsii HOM05D000683 ORTHO05D000507 7.1e-19 99.8 419 28.2
PGR042G0923 Punica granatum HOM05D005745 ORTHO05D006857 9.2e-19 99.4 433 29.8
Cfa003949 Carpinus fangiana HOM05D000683 ORTHO05D000507 1.2e-18 99.0 421 27.8
AUR62033312 Chenopodium quinoa HOM05D005745 ORTHO05D006857 1.2e-18 99.0 416 28.8
Eucgr.E00169 Eucalyptus grandis HOM05D005745 ORTHO05D006857 1.6e-18 98.6 490 28.6
Lalb_Chr04g0256771 Lupinus albus HOM05D005745 ORTHO05D006857 2.1e-18 98.2 448 28.6
AUR62033347 Chenopodium quinoa HOM05D005745 ORTHO05D006857 3.5e-18 97.4 416 29.1
Sp1g00540 Schrenkiella parvula HOM05D005745 ORTHO05D006857 3.5e-18 97.4 419 29.1
Hund27291 Selenicereus undatus HOM05D005745 ORTHO05D006857 3.5e-18 97.4 425 28.5
Lalb_Chr10g0097191 Lupinus albus HOM05D005745 ORTHO05D006857 4.6e-18 97.1 424 28.1
MSTRG.17255 Avicennia marina HOM05D005745 ORTHO05D006857 6.0e-18 96.7 472 27.8
Carub.0001s0045 Capsella rubella HOM05D005745 ORTHO05D006857 6.0e-18 96.7 424 28.8
AL1G10580 Arabidopsis lyrata HOM05D005745 ORTHO05D006857 1.0e-17 95.9 428 30.4
Eucgr.E00173 Eucalyptus grandis HOM05D005745 ORTHO05D006857 1.3e-17 95.5 477 28.1
Gorai.008G118400 Gossypium raimondii HOM05D005745 ORTHO05D006857 1.3e-17 95.5 421 27.8
Aa31LG1G11130 Aethionema arabicum HOM05D005745 ORTHO05D006857 2.3e-17 94.7 449 30.1
Gohir.A12G105400 Gossypium hirsutum HOM05D005745 ORTHO05D006857 2.3e-17 94.7 421 28.0
Gohir.D12G109300 Gossypium hirsutum HOM05D005745 ORTHO05D006857 2.3e-17 94.7 421 28.0
Thecc.01G362500 Theobroma cacao HOM05D005745 ORTHO05D006857 2.3e-17 94.7 286 31.5
HPP92_001499 Vanilla planifolia HOM05D005745 ORTHO05D006857 2.3e-17 94.7 421 27.3
Glyma.07G073300 Glycine max HOM05D005745 ORTHO05D006857 3.0e-17 94.4 374 29.9
FAN06G1549 Fragaria x ananassa HOM05D005745 ORTHO05D006857 5.1e-17 93.6 434 29.3
Sc26g0000960 Simmondsia chinensis HOM05D005745 ORTHO05D006857 5.1e-17 93.6 411 29.4
THA.LOC104817020 Tarenaya hassleriana HOM05D005745 ORTHO05D006857 6.6e-17 93.2 423 28.4
CiPaw.02G029400 Carya illinoinensis HOM05D005745 ORTHO05D006857 1.1e-16 92.4 416 29.6
MD01G1055100 Malus domestica HOM05D005745 ORTHO05D006857 1.1e-16 92.4 414 29.2
BcaB03g13612 Brassica carinata HOM05D005745 ORTHO05D006857 1.9e-16 91.7 430 29.3
FAN10G4182 Fragaria x ananassa HOM05D005745 ORTHO05D006857 1.9e-16 91.7 430 28.8
SMO266G0032 Selaginella moellendorffii HOM05D005745 ORTHO05D006857 1.9e-16 91.7 245 34.3
MBI18_g01486_MAGBIO Magnolia biondii HOM05D005745 ORTHO05D006857 2.5e-16 91.3 369 28.5
Dinv43791 Davidia involucrata HOM05D005745 ORTHO05D006857 4.3e-16 90.5 420 26.9
EL10Ac1g00543 Beta vulgaris HOM05D005745 ORTHO05D006857 9.6e-16 89.4 411 29.4
Thhalv10007725m.g Eutrema salsugineum HOM05D005745 ORTHO05D006857 1.2e-15 89.0 422 29.1
CSS0024424 Camellia sinensis var. sinensis HOM05D005745 ORTHO05D006857 3.6e-15 87.4 436 26.1
BraA10t42305Z Brassica rapa HOM05D005745 ORTHO05D006857 1.4e-14 85.5 438 28.8
CSS0038489 Camellia sinensis var. sinensis HOM05D005745 ORTHO05D006857 1.4e-14 85.5 442 26.9
Zm00001eb067600 Zea mays HOM05D005745 ORTHO05D006857 1.8e-14 85.1 413 26.9
Prupe.2G164800 Prunus persica HOM05D005745 ORTHO05D006857 4.0e-14 84.0 365 28.2
CARHR000560 Cardamine hirsuta HOM05D005745 ORTHO05D006857 5.3e-14 83.6 420 28.1
Ah.05g176680 Amaranthus hybridus HOM05D005745 ORTHO05D006857 1.2e-13 82.4 408 27.5
FAN03G1898 Fragaria x ananassa HOM05D005745 ORTHO05D006857 1.5e-13 82.0 371 29.1
vmacro13297 Vaccinium macrocarpon HOM05D005745 ORTHO05D006857 1.5e-13 82.0 463 25.9
A10p00280 Brassica napus HOM05D005745 ORTHO05D006857 2.6e-13 81.3 430 28.1
C05p00290 Brassica napus HOM05D005745 ORTHO05D006857 5.8e-13 80.1 433 28.2
BolC5t28819H Brassica oleracea HOM05D005745 ORTHO05D006857 1.3e-12 79.0 424 27.8
CiPaw.02G029200 Carya illinoinensis HOM05D005745 ORTHO05D006857 3.8e-12 77.4 404 28.2
AUR62004330 Chenopodium quinoa HOM05D005745 ORTHO05D006857 1.9e-11 75.1 474 26.2
Cre14.g629283 Chlamydomonas reinhardtii HOM05D005745 ORTHO05D006857 2.4e-11 74.7 554 25.8
MELO3C021221.2 Cucumis melo HOM05D005745 ORTHO05D006857 5.4e-11 73.6 420 27.6
Oeu056357.1 Olea europaea HOM05D005745 ORTHO05D006857 5.4e-11 73.6 170 36.5
Os04g0683500 Oryza sativa ssp. japonica HOM05D005745 ORTHO05D006857 7.1e-11 73.2 360 26.9
ATR0594G105 Amborella trichopoda HOM05D005745 ORTHO05D006857 9.3e-11 72.8 176 35.2
CiPaw.02G029100 Carya illinoinensis HOM05D005745 ORTHO05D006857 1.2e-10 72.4 415 28.9
Gohir.A12G105450 Gossypium hirsutum HOM05D005745 ORTHO05D006857 4.6e-10 70.5 353 26.6
CDE06G1611 Ceratophyllum demersum HOM05D005745 ORTHO05D006857 7.8e-10 69.7 428 23.8
Psat4g154320 Pisum sativum HOM05D005745 ORTHO05D006857 7.8e-10 69.7 175 33.1
Phvul.010G096200 Phaseolus vulgaris HOM05D005745 ORTHO05D006857 1.3e-09 68.9 168 36.3
Atru.BG.56.p Acer truncatum HOM05D005745 ORTHO05D006857 1.7e-09 68.6 157 31.8
unitig_26.g9734 Utricularia gibba HOM05D005745 ORTHO05D006857 1.7e-09 68.6 164 36.0
FvH4_7g13861 Fragaria vesca HOM05D005745 ORTHO05D006857 3.0e-09 67.8 171 33.9
FAN06G0933 Fragaria x ananassa HOM05D005745 ORTHO05D006857 3.0e-09 67.8 332 26.5
Oeu056356.1 Olea europaea HOM05D005745 ORTHO05D006857 3.9e-09 67.4 93 48.4
TPR.G39633 Trifolium pratense HOM05D005745 ORTHO05D006857 5.1e-09 67.0 186 33.3
Nitab4.5_0002262g0010 Nicotiana tabacum HOM05D005745 ORTHO05D006857 8.7e-09 66.2 102 39.2
RcHm_v2.0_Chr1g0354081 Rosa chinensis HOM05D005745 ORTHO05D006857 1.5e-08 65.5 244 30.7
Zm00001eb420790 Zea mays HOM05D005745 ORTHO05D006857 2.5e-08 64.7 169 33.7
MCO15G493 Micromonas commoda HOM05D005745 ORTHO05D006857 4.3e-08 63.9 355 31.5
TPR.G4413 Trifolium pratense HOM05D005745 ORTHO05D006857 5.6e-08 63.5 186 30.1
CBR_g12518 Chara braunii HOM05D004914 ORTHO05D006512 1.6e-07 62.0 101 42.6
AUR62003100 Chenopodium quinoa HOM05D005745 ORTHO05D006857 8.1e-07 59.7 160 33.8
Atru.chr5.475 Acer truncatum HOM05D005745 ORTHO05D006857 2.4e-06 58.2 87 37.9
Glyma.03G013550 Glycine max HOM05D005745 ORTHO05D006857 4.0e-06 57.4 93 40.9
AUR62034353 Chenopodium quinoa HOM05D005745 ORTHO05D006857 5.3e-06 57.0 170 31.8
PRCOL_00001873 Prasinoderma coloniale HOM05D005745 ORTHO05D006857 5.3e-06 57.0 416 32.0
SEGI_32349 Sequoiadendron giganteum HOM05D005745 ORTHO05D006857 6.9e-06 56.6 95 42.1


User provided reference genes

Program Settings