Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc11g032100.2 Solanum lycopersicum HOM05D000042 ORTHO05D008481 5.5e-40 167.2 83 100.0
Sopen11g014790 Solanum pennellii HOM05D000042 ORTHO05D008481 5.5e-40 167.2 83 100.0
PGSC0003DMG402018787 Solanum tuberosum HOM05D000042 ORTHO05D008481 5.5e-40 167.2 83 100.0
Nitab4.5_0000748g0100 Nicotiana tabacum HOM05D000042 ORTHO05D008481 3.7e-36 154.5 83 90.4
Peaxi162Scf00688g00218 Petunia axillaris HOM05D000042 ORTHO05D008481 1.1e-35 152.9 84 91.7
Dinv41787 Davidia involucrata HOM05D000042 ORTHO05D008481 1.3e-25 119.4 80 71.2
CSS0002234 Camellia sinensis var. sinensis HOM05D000042 ORTHO05D008481 2.9e-25 118.2 83 74.7
Sc26g0000580 Simmondsia chinensis HOM05D000042 ORTHO05D008481 3.8e-25 117.9 83 67.5
Sc26g0002100 Simmondsia chinensis HOM05D000042 ORTHO05D008481 3.8e-25 117.9 83 67.5
PGR042G2160 Punica granatum HOM05D000042 ORTHO05D008481 1.9e-24 115.5 87 70.1
Eucgr.F02956 Eucalyptus grandis HOM05D000042 ORTHO05D008481 2.7e-23 111.7 81 66.7
Potri.013G102600 Populus trichocarpa HOM05D000042 ORTHO05D008481 2.7e-23 111.7 83 66.3
HanXRQChr09g0267081 Helianthus annuus HOM05D000042 ORTHO05D008481 3.6e-23 111.3 83 67.5
GSVIVG01025916001 Vitis vinifera HOM05D000042 ORTHO05D008481 4.7e-23 110.9 81 69.1
Oeu002302.1 Olea europaea HOM05D000042 ORTHO05D008481 6.1e-23 110.5 91 63.7
Thecc.08G195500 Theobroma cacao HOM05D000042 ORTHO05D008481 2.3e-22 108.6 80 68.8
MSTRG.1575 Avicennia marina HOM05D000042 ORTHO05D008481 3.0e-22 108.2 80 62.5
MD15G1400400 Malus domestica HOM05D000042 ORTHO05D008481 5.2e-22 107.5 81 65.4
TWI59G0399 Tripterygium wilfordii HOM05D000042 ORTHO05D008481 6.7e-22 107.1 84 67.9
Duzib177G0984 Durio zibethinus HOM05D000042 ORTHO05D008481 2.0e-21 105.5 79 68.4
QL09p004420 Quercus lobata HOM05D000042 ORTHO05D008481 2.0e-21 105.5 81 66.7
Ciclev10023354m.g Citrus clementina HOM05D000042 ORTHO05D008481 2.6e-21 105.1 84 64.3
FvH4_5g32850 Fragaria vesca HOM05D000042 ORTHO05D008481 4.4e-21 104.4 78 65.4
Prupe.1G548000 Prunus persica HOM05D000042 ORTHO05D008481 5.7e-21 104.0 85 64.7
DCAR_001474 Daucus carota HOM05D000042 ORTHO05D008481 7.5e-21 103.6 84 64.3
Lsat_1_v5_gn_4_134700 Lactuca sativa HOM05D000042 ORTHO05D008481 9.7e-21 103.2 83 62.7
FAN08G2778 Fragaria x ananassa HOM05D000042 ORTHO05D008481 1.3e-20 102.8 78 64.1
Atru.chr13.2279 Acer truncatum HOM05D000042 ORTHO05D008481 2.8e-20 101.7 83 61.4
ECA232G0827 Erigeron canadensis HOM05D000042 ORTHO05D008481 2.8e-20 101.7 82 63.4
CANSAT25G1248 Cannabis sativa HOM05D000042 ORTHO05D008481 4.8e-20 100.9 88 65.9
Migut.C01339 Erythranthe guttata HOM05D000042 ORTHO05D008481 4.8e-20 100.9 96 59.4
Sabra19G0088100 Salix brachista HOM05D000042 ORTHO05D008481 4.8e-20 100.9 81 60.5
MD08G1216000 Malus domestica HOM05D000042 ORTHO05D008481 1.1e-19 99.8 83 61.4
Aqoxy6G00067 Aquilegia oxysepala HOM05D000042 ORTHO05D008481 4.1e-19 97.8 83 61.4
CiPaw.03G017700 Carya illinoinensis HOM05D000042 ORTHO05D008481 5.3e-19 97.4 89 56.2
FAN18G1030 Fragaria x ananassa HOM05D000042 ORTHO05D008481 5.3e-19 97.4 79 63.3
Manes.02G196125 Manihot esculenta HOM05D000042 ORTHO05D008481 5.3e-19 97.4 83 62.7
Manes.18G120200 Manihot esculenta HOM05D000042 ORTHO05D008481 5.3e-19 97.4 83 60.2
Cfa008118 Carpinus fangiana HOM05D000042 ORTHO05D008481 7.0e-19 97.1 83 60.2
DCAR_011516 Daucus carota HOM05D000042 ORTHO05D008481 1.6e-18 95.9 84 61.9
SGA_v2.0_scaffold118G32576 Striga asiatica HOM05D004842 ORTHO05D005929 1.6e-18 95.9 82 61.0
Glyma.12G005000 Glycine max HOM05D000042 ORTHO05D008481 2.7e-18 95.1 83 60.2
Medtr4g036050 Medicago truncatula HOM05D000042 ORTHO05D008481 7.7e-18 93.6 83 59.0
Glyma.09G231600 Glycine max HOM05D000042 ORTHO05D008481 2.2e-17 92.0 81 59.3
Gorai.013G135200 Gossypium raimondii HOM05D000042 ORTHO05D008481 2.2e-17 92.0 80 57.5
Nn5g27490 Nelumbo nucifera HOM05D000042 ORTHO05D008481 2.2e-17 92.0 92 56.5
Lj3g0003305 Lotus japonicus HOM05D000042 ORTHO05D008481 2.9e-17 91.7 83 57.8
Sed0005726 Sechium edule HOM05D000042 ORTHO05D008481 1.5e-16 89.4 83 54.2
Lalb_Chr01g0003371 Lupinus albus HOM05D000042 ORTHO05D008481 1.9e-16 89.0 83 56.6
Psat7g151360 Pisum sativum HOM05D000042 ORTHO05D008481 1.9e-16 89.0 83 56.6
PSO170G6311 Papaver somniferum HOM05D000042 ORTHO05D008481 2.5e-16 88.6 80 55.0
VMungo1127G0817 Vigna mungo HOM05D000042 ORTHO05D008481 2.5e-16 88.6 80 57.5
TPR.G3675 Trifolium pratense HOM05D000042 ORTHO05D008481 3.2e-16 88.2 83 56.6
THA.LOC104809752 Tarenaya hassleriana HOM05D000042 ORTHO05D008481 4.2e-16 87.8 86 54.7
CARHR291120 Cardamine hirsuta HOM05D000042 ORTHO05D008481 1.2e-15 86.3 86 53.5
Aa31LG4G9000 Aethionema arabicum HOM05D000042 ORTHO05D008481 2.1e-15 85.5 87 52.9
BcaB05g24659 Brassica carinata HOM05D000042 ORTHO05D008481 2.1e-15 85.5 86 55.8
A02p17270 Brassica napus HOM05D000042 ORTHO05D008481 2.1e-15 85.5 86 55.8
BraA02t06775Z Brassica rapa HOM05D000042 ORTHO05D008481 2.1e-15 85.5 86 55.8
Sp5g26700 Schrenkiella parvula HOM05D000042 ORTHO05D008481 3.6e-15 84.7 86 54.7
BcaC03g15285 Brassica carinata HOM05D000042 ORTHO05D008481 4.7e-15 84.3 86 54.7
C02p28910 Brassica napus HOM05D000042 ORTHO05D008481 4.7e-15 84.3 86 54.7
BolC2t08939H Brassica oleracea HOM05D000042 ORTHO05D008481 4.7e-15 84.3 86 54.7
BraA07t30702Z Brassica rapa HOM05D000042 ORTHO05D008481 4.7e-15 84.3 86 54.7
PSO782G5613 Papaver somniferum HOM05D000042 ORTHO05D008481 4.7e-15 84.3 80 55.0
arahy.Tifrunner.gnm1.ann1.F9YQ6H Arachis hypogaea HOM05D000042 ORTHO05D008481 6.1e-15 84.0 81 56.8
AT1G71692 Arabidopsis thaliana HOM05D000042 ORTHO05D008481 8.0e-15 83.6 86 53.5
Thhalv10019132m.g Eutrema salsugineum HOM05D000042 ORTHO05D008481 8.0e-15 83.6 87 54.0
BcaC08g45766 Brassica carinata HOM05D000042 ORTHO05D008481 1.0e-14 83.2 86 53.5
C06p35490 Brassica napus HOM05D000042 ORTHO05D008481 1.0e-14 83.2 86 53.5
BolC6t38671H Brassica oleracea HOM05D000042 ORTHO05D008481 1.0e-14 83.2 86 53.5
Phvul.011G005800 Phaseolus vulgaris HOM05D000042 ORTHO05D008481 1.0e-14 83.2 80 55.0
BcaB03g15611 Brassica carinata HOM05D000042 ORTHO05D008481 1.4e-14 82.8 86 53.5
vmacro00928 Vaccinium macrocarpon HOM05D000042 ORTHO05D008481 1.4e-14 82.8 83 56.6
Os08g0112700 Oryza sativa ssp. japonica HOM05D000042 ORTHO05D008481 1.8e-14 82.4 70 60.0
CsaV3_5G040310 Cucumis sativus L. HOM05D000042 ORTHO05D008481 2.3e-14 82.0 84 53.6
AL2G31220 Arabidopsis lyrata HOM05D000042 ORTHO05D008481 3.0e-14 81.6 87 52.9
Zm00001eb260590 Zea mays HOM05D000042 ORTHO05D008481 3.0e-14 81.6 70 58.6
BcaC08g46592 Brassica carinata HOM05D000042 ORTHO05D008481 5.2e-14 80.9 87 55.2
C06p45700 Brassica napus HOM05D000042 ORTHO05D008481 5.2e-14 80.9 87 55.2
BolC6t39621H Brassica oleracea HOM05D000042 ORTHO05D008481 5.2e-14 80.9 87 55.2
SalBow7G3415 Salvia bowleyana HOM05D000042 ORTHO05D008481 5.2e-14 80.9 53 73.6
A07p37820 Brassica napus HOM05D000042 ORTHO05D008481 1.5e-13 79.3 87 54.0
BraA07t31346Z Brassica rapa HOM05D000042 ORTHO05D008481 1.5e-13 79.3 87 54.0
Carub.0002s1842 Capsella rubella HOM05D000042 ORTHO05D008481 2.0e-13 79.0 86 50.0
Oeu051777.1 Olea europaea HOM05D000042 ORTHO05D008481 2.6e-13 78.6 53 71.7
Oeu051778.1 Olea europaea HOM05D000042 ORTHO05D008481 2.6e-13 78.6 53 71.7
Os12g0206800 Oryza sativa ssp. japonica HOM05D000042 ORTHO05D008481 5.7e-13 77.4 85 50.6
A07p30650 Brassica napus HOM05D000065 ORTHO05D000162 7.5e-13 77.0 80 53.8
Sabra13G0088700 Salix brachista HOM05D000042 ORTHO05D008481 7.5e-13 77.0 55 69.1
FAN04G1582 Fragaria x ananassa HOM05D000042 ORTHO05D008481 6.3e-12 73.9 78 51.3
Potri.019G076800 Populus trichocarpa HOM05D000042 ORTHO05D008481 6.3e-12 73.9 84 51.2
Oeu013900.2 Olea europaea HOM05D000042 ORTHO05D008481 1.8e-11 72.4 51 68.6
ATR1136G119 Amborella trichopoda HOM05D000042 ORTHO05D008481 2.4e-11 72.0 84 51.2
Hund26634 Selenicereus undatus HOM05D000042 ORTHO05D008481 4.1e-11 71.2 78 46.2
Gohir.A13G117800 Gossypium hirsutum HOM05D000042 ORTHO05D008481 1.6e-10 69.3 80 48.8
Cc10_g16470 Coffea canephora HOM05D000042 ORTHO05D008481 4.5e-10 67.8 38 86.8
TWI23G1087 Tripterygium wilfordii HOM05D000042 ORTHO05D008481 1.7e-09 65.9 83 48.2
Nitab4.5_0000927g0070 Nicotiana tabacum HOM05D000042 ORTHO05D008481 2.9e-09 65.1 39 76.9
Zm00001eb174000 Zea mays HOM05D000042 ORTHO05D008481 5.0e-09 64.3 100 41.0
ClCG08G000470 Citrullus lanatus HOM05D000042 ORTHO05D008481 8.5e-09 63.5 83 45.8
EL10Ac1g01651 Beta vulgaris HOM05D000042 ORTHO05D008481 3.2e-08 61.6 83 44.6
RcHm_v2.0_Chr7g0230721 Rosa chinensis HOM05D000042 ORTHO05D008481 5.5e-08 60.8 37 73.0
Zm00001eb423130 Zea mays HOM05D000042 ORTHO05D008481 2.1e-07 58.9 63 49.2


User provided reference genes

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