Gene: Sopen11g014790

General Information

Structural Information

  • Species Solanum pennellii
  • Gene Identifier Sopen11g014790
  • Transcript Identifier Sopen11g014790.1
  • Gene Type Coding gene
  • Location Spenn-ch11 : 25704063-25726093 : positive

Gene Family Information

  • ID HOM05D000042
  • #Genes/#Species 4894/100
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • tid Sopen11g014790.1

Descriptions

  • Description Encodes a member of the MADS box family of transcription factors. Involved in root cell differentiation and flowering time. Loss of function mutations have abnormal cellular differentiation in the roots and are late flowering. AGL12 along with AGL14, and AGL17 is preferentially expressed in root tissues and represent the only characterized MADS box genes expressed in roots. | AGAMOUS-like 12 (AGL12) | FUNCTIONS IN: sequence-specific DNA binding transcription factor activity | INVOLVED IN: vegetative to reproductive phase transition of meristem, root development | LOCATED IN: nucleus | EXPRESSED IN: 11 plant structures | EXPRESSED DURING: 4 anthesis, C globular stage, D bilateral stage, E expanded cotyledon stage | CONTAINS InterPro DOMAIN/s: Transcription factor, MADS-box , Transcription factor, K-box | BEST Arabidopsis thaliana protein match is: K-box region and MADS-box transcription factor family protein
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Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0006355
IEA
InterProregulation of transcription, DNA-templated
GO:0045944
IEA
InterPropositive regulation of transcription by RNA polymerase II
GO:0048364
ISO
PLAZA Integrative Orthologyroot development AT1G71692
GO:0010228
ISO
PLAZA Integrative Orthologyvegetative to reproductive phase transition of meristem AT1G71692

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0003700
IEA
InterProDNA-binding transcription factor activity
GO:0003677
IEA
InterProDNA binding
GO:0046983
IEA
InterProprotein dimerization activity
GO:0000977
IEA
InterProRNA polymerase II transcription regulatory region sequence-specific DNA binding
GO:0005515
ISO
PLAZA Integrative Orthologyprotein binding AT1G71692

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005634
IEA
InterPronucleus

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR002487 Transcription factor, K-box
IPR036879 Transcription factor, MADS-box superfamily
IPR002100 Transcription factor, MADS-box
IPR033896 MADS MEF2-like
Mapman id Description
15.5.14 RNA biosynthesis.transcriptional regulation.transcription factor (MADS/AGL)