Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGSC0003DMG402008663 Solanum tuberosum HOM05D004834 ORTHO05D006247 2.8e-76 288.5 141 100.0
Solyc11g045370.1 Solanum lycopersicum HOM05D004834 ORTHO05D006247 1.3e-41 173.3 85 98.8
Sopen11g020840 Solanum pennellii HOM05D004834 ORTHO05D006247 2.9e-41 172.2 83 100.0
PGSC0003DMG403008663 Solanum tuberosum HOM05D004834 ORTHO05D006247 2.9e-41 172.2 83 100.0
CAN.G409.3 Capsicum annuum HOM05D004834 ORTHO05D006247 1.1e-40 170.2 83 98.8
Atru.chr8.1261 Acer truncatum HOM05D004834 ORTHO05D006247 2.1e-39 166.0 83 95.2
Ciclev10011373m.g Citrus clementina HOM05D004834 ORTHO05D006247 2.7e-39 165.6 83 95.2
Manes.09G041400 Manihot esculenta HOM05D004834 ORTHO05D006247 2.7e-39 165.6 83 95.2
CiPaw.09G024600 Carya illinoinensis HOM05D004834 ORTHO05D006247 3.5e-39 165.2 83 94.0
Nitab4.5_0000117g0020 Nicotiana tabacum HOM05D004834 ORTHO05D006247 3.5e-39 165.2 82 96.3
FAN02G4310 Fragaria x ananassa HOM05D004834 ORTHO05D006247 4.6e-39 164.9 83 95.2
Lalb_Chr20g0111191 Lupinus albus HOM05D004834 ORTHO05D006247 6.0e-39 164.5 83 94.0
Nn2g14430 Nelumbo nucifera HOM05D004834 ORTHO05D006247 6.0e-39 164.5 83 92.8
CANSAT64G2176 Cannabis sativa HOM05D004834 ORTHO05D006247 7.9e-39 164.1 83 94.0
Cc06_g07030 Coffea canephora HOM05D004834 ORTHO05D006247 7.9e-39 164.1 83 92.8
Hma1.2p1_0304F.1_g119280 Hydrangea macrophylla HOM05D004834 ORTHO05D006247 7.9e-39 164.1 83 94.0
CSS0029343 Camellia sinensis var. sinensis HOM05D004834 ORTHO05D006247 1.0e-38 163.7 83 92.8
CANSAT64G0017 Cannabis sativa HOM05D004834 ORTHO05D006247 1.0e-38 163.7 83 94.0
Migut.J00722 Erythranthe guttata HOM05D004834 ORTHO05D006247 1.0e-38 163.7 83 94.0
Eucgr.A02536 Eucalyptus grandis HOM05D004834 ORTHO05D006247 1.0e-38 163.7 83 94.0
Oeu035654.3 Olea europaea HOM05D004834 ORTHO05D006247 1.0e-38 163.7 83 92.8
Aqoxy1G00576 Aquilegia oxysepala HOM05D004834 ORTHO05D006247 1.3e-38 163.3 83 91.6
Cfa020095 Carpinus fangiana HOM05D004834 ORTHO05D006247 1.3e-38 163.3 83 92.8
Haze_20096 Corylus avellana HOM05D004834 ORTHO05D006247 1.3e-38 163.3 83 92.8
Duzib093G1706 Durio zibethinus HOM05D004834 ORTHO05D006247 1.3e-38 163.3 83 92.8
FvH4_6g21120 Fragaria vesca HOM05D004834 ORTHO05D006247 1.3e-38 163.3 83 94.0
FAN14G4987 Fragaria x ananassa HOM05D004834 ORTHO05D006247 1.3e-38 163.3 83 94.0
Gohir.D09G128200 Gossypium hirsutum HOM05D004834 ORTHO05D006247 1.3e-38 163.3 83 92.8
HanXRQChr14g0453201 Helianthus annuus HOM05D004834 ORTHO05D006247 1.3e-38 163.3 83 94.0
Lsat_1_v5_gn_2_102000 Lactuca sativa HOM05D004834 ORTHO05D006247 1.3e-38 163.3 83 94.0
Prupe.7G088800 Prunus persica HOM05D004834 ORTHO05D006247 1.3e-38 163.3 83 92.8
QL07p026067 Quercus lobata HOM05D004834 ORTHO05D006247 1.3e-38 163.3 83 92.8
ATR0697G015 Amborella trichopoda HOM05D004834 ORTHO05D006247 1.8e-38 162.9 83 91.6
DCAR_013465 Daucus carota HOM05D004834 ORTHO05D006247 1.8e-38 162.9 83 92.8
RcHm_v2.0_Chr3g0477531 Rosa chinensis HOM05D004834 ORTHO05D006247 1.8e-38 162.9 83 92.8
Thecc.05G183400 Theobroma cacao HOM05D004834 ORTHO05D006247 1.8e-38 162.9 83 91.6
TPR.G14400 Trifolium pratense HOM05D004834 ORTHO05D006247 1.8e-38 162.9 85 90.6
TAR633G1355 Trochodendron aralioides HOM05D004834 ORTHO05D006247 1.8e-38 162.9 83 92.8
GSVIVG01022507001 Vitis vinifera HOM05D004834 ORTHO05D006247 1.8e-38 162.9 83 92.8
MELO3C009581.2 Cucumis melo HOM05D004834 ORTHO05D006247 2.3e-38 162.5 83 92.8
CsaV3_3G038380 Cucumis sativus L. HOM05D004834 ORTHO05D006247 2.3e-38 162.5 83 92.8
Sed0002421 Sechium edule HOM05D004834 ORTHO05D006247 2.3e-38 162.5 83 92.8
Actinidia03850 Actinidia chinensis HOM05D004834 ORTHO05D006247 3.0e-38 162.2 83 91.6
MSTRG.19322 Avicennia marina HOM05D004834 ORTHO05D006247 3.0e-38 162.2 83 92.8
CSS0012663 Camellia sinensis var. sinensis HOM05D004834 ORTHO05D006247 3.0e-38 162.2 83 91.6
arahy.Tifrunner.gnm1.ann1.5D1K5R Arachis hypogaea HOM05D004834 ORTHO05D006247 3.9e-38 161.8 83 91.6
Ca_09087_v3 Cicer arietinum L. HOM05D004834 ORTHO05D006247 3.9e-38 161.8 83 91.6
FAN05G2138 Fragaria x ananassa HOM05D004834 ORTHO05D006247 3.9e-38 161.8 83 92.8
FAN05G4019 Fragaria x ananassa HOM05D004834 ORTHO05D006247 3.9e-38 161.8 83 92.8
Glyma.03G205500 Glycine max HOM05D004834 ORTHO05D006247 3.9e-38 161.8 83 91.6
Lj1g0003379 Lotus japonicus HOM05D004834 ORTHO05D006247 3.9e-38 161.8 83 91.6
Oeu063072.1 Olea europaea HOM05D004834 ORTHO05D006247 3.9e-38 161.8 83 91.6
Phvul.001G199000 Phaseolus vulgaris HOM05D004834 ORTHO05D006247 3.9e-38 161.8 83 91.6
SalBow1G1939 Salvia bowleyana HOM05D004834 ORTHO05D006247 3.9e-38 161.8 90 84.4
vmacro07525 Vaccinium macrocarpon HOM05D004834 ORTHO05D006247 3.9e-38 161.8 85 89.4
VMungo1383G2386 Vigna mungo HOM05D004834 ORTHO05D006247 3.9e-38 161.8 83 91.6
arahy.Tifrunner.gnm1.ann1.5D1JVS Arachis hypogaea HOM05D004834 ORTHO05D006247 5.1e-38 161.4 83 90.4
EL10Ac5g11795 Beta vulgaris HOM05D004834 ORTHO05D006247 5.1e-38 161.4 83 91.6
AUR62036303 Chenopodium quinoa HOM05D004834 ORTHO05D006247 5.1e-38 161.4 83 91.6
AUR62038413 Chenopodium quinoa HOM05D004834 ORTHO05D006247 5.1e-38 161.4 83 91.6
ECA238G0502 Erigeron canadensis HOM05D004834 ORTHO05D006247 5.1e-38 161.4 83 92.8
THA.LOC104799266 Tarenaya hassleriana HOM05D004834 ORTHO05D006247 5.1e-38 161.4 83 91.6
MD12G1046600 Malus domestica HOM05D004834 ORTHO05D006247 6.7e-38 161.0 83 91.6
MD12G1046700 Malus domestica HOM05D004834 ORTHO05D006247 6.7e-38 161.0 83 91.6
PSO384G0426 Papaver somniferum HOM05D004834 ORTHO05D006247 6.7e-38 161.0 83 91.6
Ah.02g115150 Amaranthus hybridus HOM05D004834 ORTHO05D006247 8.7e-38 160.6 83 91.6
COL.COLO4_29472 Corchorus olitorius HOM05D004834 ORTHO05D006247 8.7e-38 160.6 83 90.4
Sc01g0005240 Simmondsia chinensis HOM05D004834 ORTHO05D006247 8.7e-38 160.6 83 91.6
TWI53G0913 Tripterygium wilfordii HOM05D004834 ORTHO05D006247 8.7e-38 160.6 83 90.4
vmacro07522 Vaccinium macrocarpon HOM05D004834 ORTHO05D006247 8.7e-38 160.6 83 90.4
Aa31sc167G60 Aethionema arabicum HOM05D004834 ORTHO05D006247 1.1e-37 160.2 83 90.4
Dinv11906 Davidia involucrata HOM05D004834 ORTHO05D006247 1.1e-37 160.2 83 92.8
Rhsim03G0058000 Rhododendron simsii HOM05D004834 ORTHO05D006247 1.1e-37 160.2 83 90.4
Cpa.g.sc222.7 Carica papaya HOM05D004834 ORTHO05D006247 1.5e-37 159.8 83 89.2
Potri.016G064800 Populus trichocarpa HOM05D004834 ORTHO05D006247 1.5e-37 159.8 83 91.6
AL6G16670 Arabidopsis lyrata HOM05D004834 ORTHO05D006247 1.9e-37 159.5 83 90.4
Carub.0006s0546 Capsella rubella HOM05D004834 ORTHO05D006247 1.9e-37 159.5 83 90.4
MBI11_g39498_MAGBIO Magnolia biondii HOM05D004834 ORTHO05D006247 1.9e-37 159.5 83 90.4
AT5G06580 Arabidopsis thaliana HOM05D004834 ORTHO05D006247 2.5e-37 159.1 83 89.2
CARHR206620 Cardamine hirsuta HOM05D004834 ORTHO05D006247 2.5e-37 159.1 83 90.4
CDE07G2068 Ceratophyllum demersum HOM05D004834 ORTHO05D006247 2.5e-37 159.1 83 90.4
Thhalv10013121m.g Eutrema salsugineum HOM05D004834 ORTHO05D006247 2.5e-37 159.1 83 90.4
Medtr7g107050 Medicago truncatula HOM05D004834 ORTHO05D006247 2.5e-37 159.1 83 89.2
Psat3g026160 Pisum sativum HOM05D004834 ORTHO05D006247 2.5e-37 159.1 83 89.2
Rhsim03G0058100 Rhododendron simsii HOM05D004834 ORTHO05D006247 2.5e-37 159.1 83 89.2
SGA_v2.0_scaffold112G31558 Striga asiatica HOM05D004834 ORTHO05D006247 2.5e-37 159.1 83 90.4
PSO339G5030 Papaver somniferum HOM05D004834 ORTHO05D006247 5.7e-37 157.9 83 90.4
HPP92_012150 Vanilla planifolia HOM05D004834 ORTHO05D006247 5.7e-37 157.9 112 69.6
Sp6g36280 Schrenkiella parvula HOM05D004834 ORTHO05D006247 7.4e-37 157.5 83 89.2
BraA10t45020Z Brassica rapa HOM05D004834 ORTHO05D006247 9.6e-37 157.1 83 90.4
AagrBONN_evm.TU.Sc2ySwM_228.4653 Anthoceros agrestis HOM05D004834 ORTHO05D006247 1.3e-36 156.8 83 88.0
Sabra16G0066600 Salix brachista HOM05D004834 ORTHO05D006247 1.3e-36 156.8 83 90.4
C09p70190 Brassica napus HOM05D004834 ORTHO05D006247 2.1e-36 156.0 83 89.2
BolC9t59763H Brassica oleracea HOM05D004834 ORTHO05D006247 2.1e-36 156.0 83 89.2
A10p29810 Brassica napus HOM05D004834 ORTHO05D006247 3.7e-36 155.2 83 89.2
Pp3c24_4090 Physcomitrium patens HOM05D004834 ORTHO05D006247 8.2e-36 154.1 83 83.1
Mapoly0056s0055 Marchantia polymorpha HOM05D004834 ORTHO05D006247 1.1e-35 153.7 83 85.5
Hund10783 Selenicereus undatus HOM05D004834 ORTHO05D006247 1.8e-35 152.9 83 84.3
CBR_g48275 Chara braunii HOM05D004834 ORTHO05D006247 2.0e-34 149.4 83 83.1
Pp3c20_18170 Physcomitrium patens HOM05D004834 ORTHO05D006247 1.0e-33 147.1 83 81.9
Gorai.006G146800 Gossypium raimondii HOM05D004834 ORTHO05D006247 1.3e-33 146.7 84 86.9
Gohir.A09G131900 Gossypium hirsutum HOM05D004834 ORTHO05D006247 3.2e-32 142.1 83 85.5
unitig_26.g9147 Utricularia gibba HOM05D004834 ORTHO05D006247 5.5e-32 141.4 108 66.7
Prupe.7G088900 Prunus persica HOM05D004834 ORTHO05D006247 2.3e-30 136.0 75 82.7
Cfa026190 Carpinus fangiana HOM05D004834 ORTHO05D006247 7.2e-24 114.4 83 65.1
Cfa024396 Carpinus fangiana HOM05D001072 ORTHO05D006247 2.1e-23 112.8 85 65.9
TAR636G2709 Trochodendron aralioides HOM05D004834 ORTHO05D006247 6.1e-23 111.3 83 69.9
QL07p026110 Quercus lobata HOM05D004834 ORTHO05D006247 1.4e-22 110.2 51 96.1
Peaxi162Scf00210g00225 Petunia axillaris HOM05D004834 ORTHO05D006247 6.7e-22 107.8 49 98.0
vmacro07523 Vaccinium macrocarpon HOM05D004834 ORTHO05D006247 6.7e-22 107.8 50 96.0
Gohir.A11G062601 Gossypium hirsutum HOM05D004834 ORTHO05D006247 2.6e-21 105.9 49 95.9
Gohir.D02G080666 Gossypium hirsutum HOM05D004834 ORTHO05D006247 2.6e-21 105.9 49 95.9
Gohir.D05G379301 Gossypium hirsutum HOM05D004834 ORTHO05D006247 2.6e-21 105.9 49 95.9
Gohir.D10G063250 Gossypium hirsutum HOM05D004834 ORTHO05D006247 2.6e-21 105.9 49 95.9
Gorai.005G132900 Gossypium raimondii HOM05D004834 ORTHO05D006247 7.4e-21 104.4 49 93.9
Os07g0163000 Oryza sativa ssp. japonica HOM05D004834 ORTHO05D006247 1.3e-20 103.6 49 91.8
Cre10.g434900 Chlamydomonas reinhardtii HOM05D004834 ORTHO05D006247 2.2e-20 102.8 83 60.2
Gorai.012G042400 Gossypium raimondii HOM05D004834 ORTHO05D006247 2.2e-20 102.8 49 93.9
PRCOL_00003029 Prasinoderma coloniale HOM05D004834 ORTHO05D006247 1.2e-15 87.0 84 48.8
SEGI_09254 Sequoiadendron giganteum HOM05D004834 ORTHO05D006247 2.1e-15 86.3 46 91.3
MCO11G780 Micromonas commoda HOM05D004834 ORTHO05D006247 2.2e-09 66.2 80 42.5
Nitab4.5_0000670g0060 Nicotiana tabacum HOM05D004834 ORTHO05D006247 6.5e-09 64.7 29 93.1
SMO364G0024 Selaginella moellendorffii HOM05D005272 ORTHO05D006890 2.3e-06 56.2 83 34.9
Sed0020582 Sechium edule HOM05D005272 ORTHO05D006890 5.2e-06 55.1 83 37.3
Mapoly0113s0062 Marchantia polymorpha HOM05D005272 ORTHO05D006890 6.7e-06 54.7 83 38.6
Os07g0187200 Oryza sativa ssp. japonica HOM05D005272 ORTHO05D006890 6.7e-06 54.7 80 37.5
Prupe.7G162700 Prunus persica HOM05D005272 ORTHO05D006890 6.7e-06 54.7 83 38.6
ClCG07G008770 Citrullus lanatus HOM05D005272 ORTHO05D006890 8.8e-06 54.3 83 37.3
MELO3C016408.2 Cucumis melo HOM05D005272 ORTHO05D006890 8.8e-06 54.3 83 37.3
CsaV3_4G005410 Cucumis sativus L. HOM05D005272 ORTHO05D006890 8.8e-06 54.3 83 37.3
Gohir.A10G096700 Gossypium hirsutum HOM05D005272 ORTHO05D006890 8.8e-06 54.3 83 36.1
Potri.007G018600 Populus trichocarpa HOM05D005272 ORTHO05D006890 8.8e-06 54.3 83 37.3
Hund16459 Selenicereus undatus HOM05D005272 ORTHO05D006890 8.8e-06 54.3 83 37.3
HPP92_017497 Vanilla planifolia HOM05D005272 ORTHO05D006890 8.8e-06 54.3 83 33.7
HPP92_017514 Vanilla planifolia HOM05D005272 ORTHO05D006890 8.8e-06 54.3 83 33.7
Zm00001eb302200 Zea mays HOM05D005272 ORTHO05D006890 8.8e-06 54.3 80 36.2


User provided reference genes

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