Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGSC0003DMG401029997 Solanum tuberosum HOM05D006823 ORTHO05D008608 8.7e-118 427.2 245 100.0
Solyc11g065380.2 Solanum lycopersicum HOM05D006823 ORTHO05D008608 5.8e-114 414.5 245 94.3
Sopen11g025160 Solanum pennellii HOM05D006823 ORTHO05D008608 5.5e-96 354.8 249 87.6
CAN.G717.3 Capsicum annuum HOM05D006823 ORTHO05D008608 4.1e-91 338.6 233 84.5
Nitab4.5_0003572g0020 Nicotiana tabacum HOM05D006823 ORTHO05D008608 4.4e-77 292.0 254 70.1
Nitab4.5_0000016g0280 Nicotiana tabacum HOM05D006823 ORTHO05D008608 4.8e-76 288.5 253 70.8
MSTRG.19895 Avicennia marina HOM05D006823 ORTHO05D008608 6.7e-70 268.1 245 63.3
SGA_v2.0_scaffold69G23076 Striga asiatica HOM05D006823 ORTHO05D008608 1.5e-69 266.9 266 59.4
DCAR_013557 Daucus carota HOM05D006823 ORTHO05D008608 4.4e-69 265.4 252 64.7
CSS0029489 Camellia sinensis var. sinensis HOM05D006823 ORTHO05D008608 2.8e-68 262.7 250 57.6
Lsat_1_v5_gn_8_75541 Lactuca sativa HOM05D006823 ORTHO05D008608 1.2e-66 257.3 257 62.6
Dinv24090 Davidia involucrata HOM05D006823 ORTHO05D008608 2.0e-66 256.5 249 62.7
Psat1g009680 Pisum sativum HOM05D006823 ORTHO05D008608 2.7e-66 256.1 253 57.7
CSS0004284 Camellia sinensis var. sinensis HOM05D006823 ORTHO05D008608 3.8e-65 252.3 243 61.7
Ca_12095_v3 Cicer arietinum L. HOM05D006823 ORTHO05D008608 5.0e-65 251.9 253 56.1
GSVIVG01033521001 Vitis vinifera HOM05D006823 ORTHO05D008608 6.5e-65 251.5 251 61.0
CANSAT64G2950 Cannabis sativa HOM05D006823 ORTHO05D008608 3.2e-64 249.2 257 60.3
HanXRQChr05g0132841 Helianthus annuus HOM05D006823 ORTHO05D008608 3.2e-64 249.2 253 60.9
FvH4_6g22650 Fragaria vesca HOM05D006823 ORTHO05D008608 4.2e-64 248.8 245 59.2
FAN14G3816 Fragaria x ananassa HOM05D006823 ORTHO05D008608 4.2e-64 248.8 246 60.2
Actinidia17264 Actinidia chinensis HOM05D006823 ORTHO05D008608 5.5e-64 248.4 249 60.6
Medtr1g053570 Medicago truncatula HOM05D006823 ORTHO05D008608 5.5e-64 248.4 252 53.2
MD14G1060400 Malus domestica HOM05D006823 ORTHO05D008608 7.2e-64 248.1 252 61.5
PSO339G6540 Papaver somniferum HOM05D006823 ORTHO05D008608 7.2e-64 248.1 251 58.6
Ca_26114_v3 Cicer arietinum L. HOM05D006823 ORTHO05D008608 9.4e-64 247.7 253 55.7
FAN14G5352 Fragaria x ananassa HOM05D006823 ORTHO05D008608 1.2e-63 247.3 246 60.2
Thecc.05G168800 Theobroma cacao HOM05D006823 ORTHO05D008608 1.6e-63 246.9 239 62.8
FAN09G2832 Fragaria x ananassa HOM05D006823 ORTHO05D008608 2.7e-63 246.1 245 58.8
Phvul.007G258100 Phaseolus vulgaris HOM05D006823 ORTHO05D008608 3.6e-63 245.7 251 57.0
Manes.08G045100 Manihot esculenta HOM05D006823 ORTHO05D008608 4.7e-63 245.4 250 59.2
Potri.016G048600 Populus trichocarpa HOM05D006823 ORTHO05D008608 4.7e-63 245.4 251 57.8
FAN05G5147 Fragaria x ananassa HOM05D006823 ORTHO05D008608 6.1e-63 245.0 246 59.3
PSO384G3045 Papaver somniferum HOM05D006823 ORTHO05D008608 1.8e-62 243.4 249 57.4
Lj5g0012941 Lotus japonicus HOM05D006823 ORTHO05D008608 2.3e-62 243.0 253 58.1
THA.LOC104802464 Tarenaya hassleriana HOM05D006823 ORTHO05D008608 3.0e-62 242.7 251 61.4
TPR.G24279 Trifolium pratense HOM05D006823 ORTHO05D008608 4.0e-62 242.3 251 51.8
Atru.chr8.1064 Acer truncatum HOM05D006823 ORTHO05D008608 6.8e-62 241.5 250 56.8
Prupe.7G074100 Prunus persica HOM05D006823 ORTHO05D008608 8.8e-62 241.1 252 60.7
TWI74G0728 Tripterygium wilfordii HOM05D006823 ORTHO05D008608 8.8e-62 241.1 249 59.4
Rhsim04G0097800 Rhododendron simsii HOM05D006823 ORTHO05D008608 1.5e-61 240.4 251 60.2
unitig_26.g9037 Utricularia gibba HOM05D006823 ORTHO05D008608 2.0e-61 240.0 248 57.3
Nn7g36040 Nelumbo nucifera HOM05D006823 ORTHO05D008608 2.6e-61 239.6 253 57.3
Ciclev10012490m.g Citrus clementina HOM05D006823 ORTHO05D008608 3.4e-61 239.2 250 58.0
CsaV3_3G038970 Cucumis sativus L. HOM05D006823 ORTHO05D008608 7.5e-61 238.0 250 58.8
arahy.Tifrunner.gnm1.ann1.F8HZ0X Arachis hypogaea HOM05D006823 ORTHO05D008608 9.8e-61 237.7 248 59.7
Glyma.02G177100 Glycine max HOM05D006823 ORTHO05D008608 9.8e-61 237.7 251 56.2
ClCG10G017400 Citrullus lanatus HOM05D006823 ORTHO05D008608 1.3e-60 237.3 250 56.4
Eucgr.K01827 Eucalyptus grandis HOM05D006823 ORTHO05D008608 1.3e-60 237.3 249 59.8
Sed0007671 Sechium edule HOM05D006823 ORTHO05D008608 6.3e-60 235.0 249 58.6
CARHR168210 Cardamine hirsuta HOM05D006823 ORTHO05D008608 8.3e-60 234.6 250 58.4
Sabra16G0052300 Salix brachista HOM05D006823 ORTHO05D008608 1.4e-59 233.8 247 57.1
Gohir.D09G123300 Gossypium hirsutum HOM05D006823 ORTHO05D008608 4.1e-59 232.3 247 57.1
CiPaw.09G031900 Carya illinoinensis HOM05D006823 ORTHO05D008608 1.6e-58 230.3 251 56.6
Gorai.006G141900 Gossypium raimondii HOM05D006823 ORTHO05D008608 1.6e-58 230.3 247 57.1
Hund19193 Selenicereus undatus HOM05D006823 ORTHO05D008608 1.6e-58 230.3 256 59.0
Thhalv10006171m.g Eutrema salsugineum HOM05D006823 ORTHO05D008608 2.0e-58 229.9 250 57.2
RcHm_v2.0_Chr3g0480211 Rosa chinensis HOM05D006823 ORTHO05D008608 2.0e-58 229.9 246 59.3
arahy.Tifrunner.gnm1.ann1.DD58DK Arachis hypogaea HOM05D006823 ORTHO05D008608 2.7e-58 229.6 243 55.6
MBI01_g24371_MAGBIO Magnolia biondii HOM05D006823 ORTHO05D008608 2.7e-58 229.6 281 50.9
CDE04G3233 Ceratophyllum demersum HOM05D006823 ORTHO05D008608 3.5e-58 229.2 248 55.2
Migut.J01822 Erythranthe guttata HOM05D006823 ORTHO05D008608 4.5e-58 228.8 248 57.7
AL5G39560 Arabidopsis lyrata HOM05D006823 ORTHO05D008608 5.9e-58 228.4 251 57.4
HPP92_015470 Vanilla planifolia HOM05D006823 ORTHO05D008608 7.7e-58 228.0 249 56.6
AT3G57910 Arabidopsis thaliana HOM05D006823 ORTHO05D008608 1.3e-57 227.3 251 57.0
CSS0050046 Camellia sinensis var. sinensis HOM05D006823 ORTHO05D008608 1.3e-57 227.3 250 56.8
Lj2A371G33 Lonicera japonica HOM05D006823 ORTHO05D008608 1.3e-57 227.3 253 59.3
C06p24950 Brassica napus HOM05D002947 ORTHO05D003447 1.7e-57 226.9 251 56.6
Duzib093G0556 Durio zibethinus HOM05D006823 ORTHO05D008608 3.8e-57 225.7 252 57.5
Sp5g04810 Schrenkiella parvula HOM05D006823 ORTHO05D008608 3.8e-57 225.7 250 56.4
EL10Ac3g06941 Beta vulgaris HOM05D006823 ORTHO05D008608 5.0e-57 225.3 259 54.8
COL.COLO4_36138 Corchorus olitorius HOM05D006823 ORTHO05D008608 5.0e-57 225.3 244 52.0
BcaC08g44877 Brassica carinata HOM05D006823 ORTHO05D008608 6.5e-57 224.9 251 56.2
BolC6t37647H Brassica oleracea HOM05D002947 ORTHO05D003447 6.5e-57 224.9 251 56.2
FAN02G3510 Fragaria x ananassa HOM05D006823 ORTHO05D008608 4.2e-56 222.2 248 54.8
Glyma.10G091300 Glycine max HOM05D006823 ORTHO05D008608 3.6e-55 219.2 252 54.0
Cc00_g14630 Coffea canephora HOM05D006823 ORTHO05D008608 6.1e-55 218.4 252 60.3
A07p23720 Brassica napus HOM05D002947 ORTHO05D003447 1.0e-54 217.6 248 55.2
BraA07t30025Z Brassica rapa HOM05D006823 ORTHO05D008608 1.4e-54 217.2 248 55.2
BcaB02g07567 Brassica carinata HOM05D006823 ORTHO05D008608 1.8e-54 216.9 251 54.2
Carub.0005s2475 Capsella rubella HOM05D006823 ORTHO05D008608 3.0e-54 216.1 243 51.9
Aa31LG10G12620 Aethionema arabicum HOM05D006823 ORTHO05D008608 4.0e-54 215.7 249 53.8
ECA236G4823 Erigeron canadensis HOM05D006823 ORTHO05D000001 8.8e-54 214.5 240 56.7
arahy.Tifrunner.gnm1.ann1.R1CCT6 Arachis hypogaea HOM05D006823 ORTHO05D008608 9.8e-53 211.1 207 58.0
Lalb_Chr10g0091151 Lupinus albus HOM05D006823 ORTHO05D008608 9.8e-53 211.1 256 50.4
TAR623G1194 Trochodendron aralioides HOM05D006823 ORTHO05D008608 1.1e-51 207.6 236 55.9
vmacro09107 Vaccinium macrocarpon HOM05D006823 ORTHO05D008608 7.8e-50 201.4 215 60.5
Sc25g0005140 Simmondsia chinensis HOM05D006823 ORTHO05D008608 1.5e-48 197.2 244 53.7
ATR0605G325 Amborella trichopoda HOM05D006823 ORTHO05D008608 1.6e-47 193.7 205 56.6
arahy.Tifrunner.gnm1.ann1.R3LTDD Arachis hypogaea HOM05D006823 ORTHO05D008608 1.8e-46 190.3 220 54.1
AUR62024323 Chenopodium quinoa HOM05D006823 ORTHO05D008608 4.0e-46 189.1 251 46.2
Haze_19965 Corylus avellana HOM05D006823 ORTHO05D008608 6.8e-46 188.3 247 51.4
AUR62012062 Chenopodium quinoa HOM05D006823 ORTHO05D008608 4.4e-45 185.7 231 47.2
arahy.Tifrunner.gnm1.ann1.HB0B2V Arachis hypogaea HOM05D006823 ORTHO05D008608 6.4e-44 181.8 241 49.4
Os08g0509500 Oryza sativa ssp. japonica HOM05D006823 ORTHO05D008608 1.1e-43 181.0 249 50.6
Zm00001eb035020 Zea mays HOM05D006823 ORTHO05D008608 3.2e-43 179.5 259 44.0
Aqoxy1G00161 Aquilegia oxysepala HOM05D006823 ORTHO05D008608 7.8e-42 174.9 185 49.7
MELO3C009640.2 Cucumis melo HOM05D006823 ORTHO05D008608 1.7e-41 173.7 184 54.9
VMungo0720G1016 Vigna mungo HOM05D006823 ORTHO05D008608 5.0e-41 172.2 185 52.4
Gohir.A09G127050 Gossypium hirsutum HOM05D006823 ORTHO05D008608 1.6e-39 167.2 184 50.0
CSS0035925 Camellia sinensis var. sinensis HOM05D006823 ORTHO05D008608 2.8e-39 166.4 155 61.3
SEGI_05037 Sequoiadendron giganteum HOM05D006823 ORTHO05D008608 4.0e-38 162.5 251 41.8
Pp3c21_14790 Physcomitrium patens HOM05D006823 ORTHO05D008608 2.2e-36 156.8 272 41.9
Mapoly0104s0025 Marchantia polymorpha HOM05D006823 ORTHO05D008608 1.2e-34 151.0 258 36.4
CSS0008909 Camellia sinensis var. sinensis HOM05D006823 ORTHO05D008608 1.7e-33 147.1 151 53.0
FvH4_6g22250 Fragaria vesca HOM05D006823 ORTHO05D008608 1.6e-31 140.6 153 51.0
CSS0018235 Camellia sinensis var. sinensis HOM05D006823 ORTHO05D008608 2.8e-31 139.8 161 54.7
AagrBONN_evm.TU.Sc2ySwM_369.80 Anthoceros agrestis HOM05D006823 ORTHO05D008608 2.9e-28 129.8 246 36.6
CSS0004878 Camellia sinensis var. sinensis HOM05D006823 ORTHO05D008608 3.9e-25 119.4 97 63.9
CSS0021268 Camellia sinensis var. sinensis HOM05D006823 ORTHO05D008608 3.9e-25 119.4 97 63.9
arahy.Tifrunner.gnm1.ann1.WS1HM8 Arachis hypogaea HOM05D006823 ORTHO05D008608 3.1e-22 109.8 134 50.0
Zm00001eb106730 Zea mays HOM05D006823 ORTHO05D008608 8.9e-22 108.2 162 42.6
arahy.Tifrunner.gnm1.ann1.ZK4YW6 Arachis hypogaea HOM05D006823 ORTHO05D008608 1.1e-19 101.3 220 39.5
SMO145G0064 Selaginella moellendorffii HOM05D006823 ORTHO05D008608 2.4e-19 100.1 234 33.8
Zm00001eb092000 Zea mays HOM05D006823 ORTHO05D008608 2.7e-18 96.7 156 43.6
CBR_g4860 Chara braunii HOM05D006823 ORTHO05D008608 6.2e-15 85.5 330 26.7
Peaxi162Scf00258g00118 Petunia axillaris HOM05D006823 ORTHO05D008608 2.9e-12 76.6 57 64.9
arahy.Tifrunner.gnm1.ann1.V1GDUY Arachis hypogaea HOM05D006823 ORTHO05D008608 4.2e-11 72.8 89 48.3
Cpa.g.sc85.85 Carica papaya HOM05D006823 ORTHO05D008608 6.0e-10 68.9 45 64.4
Zm00001eb385990 Zea mays HOM05D006823 ORTHO05D008608 1.1e-08 64.7 99 41.4
Zm00001eb116260 Zea mays HOM05D006823 ORTHO05D008608 4.8e-07 59.3 84 40.5
Sed0018353 Sechium edule HOM05D005384 ORTHO05D006477 2.4e-06 57.0 59 44.1
THA.LOC104801042 Tarenaya hassleriana HOM05D005384 ORTHO05D006477 2.4e-06 57.0 58 48.3
Dinv07851 Davidia involucrata HOM05D005384 ORTHO05D006477 3.1e-06 56.6 59 44.1
Sc22g0001400 Simmondsia chinensis HOM05D005384 ORTHO05D006477 3.1e-06 56.6 57 47.4
Cc04_g13050 Coffea canephora HOM05D005384 ORTHO05D006477 4.0e-06 56.2 59 42.4
Ah.14g086470 Amaranthus hybridus HOM05D005384 ORTHO05D006477 5.3e-06 55.8 59 47.5
ClCG01G008440 Citrullus lanatus HOM05D005384 ORTHO05D006477 5.3e-06 55.8 59 42.4
MELO3C025104.2 Cucumis melo HOM05D005384 ORTHO05D006477 5.3e-06 55.8 59 42.4
Gohir.A12G052500 Gossypium hirsutum HOM05D005384 ORTHO05D006477 6.9e-06 55.5 59 44.1
Gorai.008G054400 Gossypium raimondii HOM05D005384 ORTHO05D006477 6.9e-06 55.5 59 44.1
GSVIVG01013204001 Vitis vinifera HOM05D005384 ORTHO05D006477 6.9e-06 55.5 59 44.1
AL5G35270 Arabidopsis lyrata HOM05D005384 ORTHO05D006477 9.0e-06 55.1 59 47.5
AT3G54230 Arabidopsis thaliana HOM05D005384 ORTHO05D006477 9.0e-06 55.1 59 47.5
Carub.0005s2082 Capsella rubella HOM05D005384 ORTHO05D006477 9.0e-06 55.1 59 47.5
Gohir.D12G051100 Gossypium hirsutum HOM05D005384 ORTHO05D006477 9.0e-06 55.1 58 44.8
QL02p064091 Quercus lobata HOM05D005384 ORTHO05D006477 9.0e-06 55.1 59 44.1


User provided reference genes

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