Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGSC0003DMG401026086 Solanum tuberosum HOM05D006564 ORTHO05D007772 1.3e-154 549.7 283 100.0
Solyc06g065620.2 Solanum lycopersicum HOM05D006564 ORTHO05D007772 6.5e-117 424.5 308 75.6
Nitab4.5_0004611g0020 Nicotiana tabacum HOM05D006564 ORTHO05D007772 8.2e-104 380.9 320 66.9
Peaxi162Scf00075g02124 Petunia axillaris HOM05D006564 ORTHO05D007772 6.3e-96 354.8 312 65.1
Nitab4.5_0003128g0060 Nicotiana tabacum HOM05D006564 ORTHO05D007772 4.0e-82 308.9 266 66.2
Dinv24837 Davidia involucrata HOM05D006564 ORTHO05D007772 1.6e-51 207.2 316 44.6
Hma1.2p1_0536F.1_g173940 Hydrangea macrophylla HOM05D006564 ORTHO05D007772 1.4e-47 194.1 322 40.7
Sopen06g024060 Solanum pennellii HOM05D006564 ORTHO05D007772 1.6e-46 190.7 165 69.1
Migut.E00581 Erythranthe guttata HOM05D006564 ORTHO05D007772 2.7e-46 189.9 321 39.3
Cc11_g15240 Coffea canephora HOM05D006564 ORTHO05D007772 1.7e-45 187.2 294 41.2
TAR622G0653 Trochodendron aralioides HOM05D006564 ORTHO05D007772 1.1e-44 184.5 328 40.9
Potri.010G041900 Populus trichocarpa HOM05D006564 ORTHO05D007772 1.1e-42 177.9 345 34.2
MD16G1094900 Malus domestica HOM05D006564 ORTHO05D007772 4.5e-41 172.6 330 37.6
Rhsim12G0044200 Rhododendron simsii HOM05D006564 ORTHO05D007772 1.3e-40 171.0 325 39.1
Prupe.1G251700 Prunus persica HOM05D006564 ORTHO05D007772 2.2e-40 170.2 322 38.5
COL.COLO4_24191 Corchorus olitorius HOM05D006564 ORTHO05D007772 3.8e-40 169.5 265 42.6
Atru.chr11.2047 Acer truncatum HOM05D006564 ORTHO05D007772 8.4e-40 168.3 316 38.3
GSVIVG01013762001 Vitis vinifera HOM05D006564 ORTHO05D007772 1.4e-39 167.5 301 37.5
SGA_v2.0_scaffold276G46631 Striga asiatica HOM05D006564 ORTHO05D007772 5.4e-39 165.6 341 35.5
CANSAT01G1831 Cannabis sativa HOM05D006564 ORTHO05D007772 2.1e-38 163.7 331 35.0
QL03p059806 Quercus lobata HOM05D006564 ORTHO05D007772 1.3e-37 161.0 324 35.8
Lj3A1053T43 Lonicera japonica HOM05D006564 ORTHO05D007772 1.8e-37 160.6 133 64.7
Nn3g16844 Nelumbo nucifera HOM05D006564 ORTHO05D007772 8.7e-37 158.3 326 37.1
arahy.Tifrunner.gnm1.ann1.T8BVJ1 Arachis hypogaea HOM05D006564 ORTHO05D007772 2.5e-36 156.8 338 35.2
Aqoxy3G02914 Aquilegia oxysepala HOM05D006564 ORTHO05D007772 2.1e-35 153.7 336 34.2
Cfa009164 Carpinus fangiana HOM05D006564 ORTHO05D007772 2.1e-35 153.7 353 33.1
AUR62014056 Chenopodium quinoa HOM05D006564 ORTHO05D007772 1.8e-34 150.6 274 38.3
Ciclev10033458m.g Citrus clementina HOM05D006564 ORTHO05D007772 2.4e-34 150.2 325 34.8
Oeu056406.1 Olea europaea HOM05D006564 ORTHO05D007772 2.4e-34 150.2 279 39.8
TWI75G0104 Tripterygium wilfordii HOM05D006564 ORTHO05D007772 2.4e-34 150.2 305 36.1
Sabra10G0025500 Salix brachista HOM05D006564 ORTHO05D007772 3.1e-34 149.8 346 31.2
PSO832G2728 Papaver somniferum HOM05D006564 ORTHO05D007772 9.0e-34 148.3 337 34.1
AUR62005394 Chenopodium quinoa HOM05D006564 ORTHO05D007772 1.2e-33 147.9 274 38.7
SalBow1G6981 Salvia bowleyana HOM05D006564 ORTHO05D007772 4.5e-33 146.0 309 36.9
Psat2g104680 Pisum sativum HOM05D006564 ORTHO05D007772 5.8e-33 145.6 315 35.9
Haze_12197 Corylus avellana HOM05D006564 ORTHO05D007772 9.9e-33 144.8 302 34.4
PGR119G0202 Punica granatum HOM05D006564 ORTHO05D007772 2.9e-32 143.3 320 34.7
FvH4_4g34230 Fragaria vesca HOM05D006564 ORTHO05D007772 4.9e-32 142.5 323 34.4
RcHm_v2.0_Chr4g0443681 Rosa chinensis HOM05D006564 ORTHO05D007772 4.9e-32 142.5 135 57.8
PSO063G0329 Papaver somniferum HOM05D006564 ORTHO05D007772 8.4e-32 141.7 338 32.5
arahy.Tifrunner.gnm1.ann1.FI0FWQ Arachis hypogaea HOM05D006564 ORTHO05D007772 1.9e-31 140.6 125 57.6
Lalb_Chr05g0216811 Lupinus albus HOM05D006564 ORTHO05D007772 2.4e-31 140.2 108 62.0
Manes.13G029100 Manihot esculenta HOM05D006564 ORTHO05D007772 2.7e-30 136.7 341 35.2
ECA234G3669 Erigeron canadensis HOM05D006564 ORTHO05D007772 3.5e-30 136.3 361 30.2
Gohir.A06G086900 Gossypium hirsutum HOM05D006564 ORTHO05D007772 4.6e-30 136.0 323 34.4
Gohir.D06G086400 Gossypium hirsutum HOM05D006564 ORTHO05D007772 7.9e-30 135.2 323 34.4
TPR.G21085 Trifolium pratense HOM05D006564 ORTHO05D007772 1.0e-29 134.8 351 32.2
VMungo1215G0480 Vigna mungo HOM05D006564 ORTHO05D007772 2.3e-29 133.7 330 31.8
Gorai.010G099700 Gossypium raimondii HOM05D006564 ORTHO05D007772 3.9e-29 132.9 367 32.2
FAN22G1362 Fragaria x ananassa HOM05D006564 ORTHO05D007772 5.1e-29 132.5 135 53.3
Glyma.01G029900 Glycine max HOM05D006564 ORTHO05D007772 7.4e-28 128.6 118 55.1
Lsat_1_v5_gn_4_5380 Lactuca sativa HOM05D006564 ORTHO05D007772 7.4e-28 128.6 325 33.8
Sc04g0009220 Simmondsia chinensis HOM05D006564 ORTHO05D007772 9.6e-28 128.3 265 37.7
THA.LOC104827560 Tarenaya hassleriana HOM05D006564 ORTHO05D007772 1.3e-27 127.9 323 34.4
Lj2g0026051 Lotus japonicus HOM05D006564 ORTHO05D007772 2.1e-27 127.1 117 55.6
Phvul.002G070600 Phaseolus vulgaris HOM05D006564 ORTHO05D007772 1.1e-26 124.8 315 31.7
Hund06003 Selenicereus undatus HOM05D006564 ORTHO05D007772 1.1e-26 124.8 329 33.4
Ca_03150_v3 Cicer arietinum L. HOM05D006564 ORTHO05D007772 2.4e-26 123.6 132 52.3
Medtr5g034180 Medicago truncatula HOM05D006564 ORTHO05D007772 6.9e-26 122.1 132 50.8
Thhalv10023451m.g Eutrema salsugineum HOM05D006564 ORTHO05D007772 1.2e-25 121.3 319 31.0
CARHR052570 Cardamine hirsuta HOM05D006564 ORTHO05D007772 2.6e-25 120.2 331 31.1
Sp2g04270 Schrenkiella parvula HOM05D006564 ORTHO05D007772 5.8e-25 119.0 333 28.8
Eucgr.H02586 Eucalyptus grandis HOM05D006564 ORTHO05D007772 1.3e-24 117.9 118 55.9
FAN12G0482 Fragaria x ananassa HOM05D006564 ORTHO05D007772 4.9e-24 115.9 135 48.9
BolC1t03666H Brassica oleracea HOM05D006564 ORTHO05D007772 3.2e-23 113.2 319 30.4
BcaB04g20267 Brassica carinata HOM05D006564 ORTHO05D007772 4.2e-23 112.8 278 32.0
BcaC09g49405 Brassica carinata HOM05D006564 ORTHO05D007772 1.2e-22 111.3 328 30.2
MBI16_g27088_MAGBIO Magnolia biondii HOM05D006564 ORTHO05D007772 1.2e-22 111.3 362 30.7
AT1G60460 Arabidopsis thaliana HOM05D006564 ORTHO05D007772 1.6e-22 110.9 132 45.5
EL10Ac6g13691 Beta vulgaris HOM05D006564 ORTHO05D007772 1.6e-22 110.9 127 47.2
Carub.0002s0487 Capsella rubella HOM05D006564 ORTHO05D007772 1.6e-22 110.9 132 47.7
Aa31LG2G9990 Aethionema arabicum HOM05D006564 ORTHO05D007772 4.6e-22 109.4 136 44.1
BraA01t03060Z Brassica rapa HOM05D006564 ORTHO05D007772 4.6e-22 109.4 273 31.5
C01p37040 Brassica napus HOM05D006564 ORTHO05D007772 6.0e-22 109.0 328 29.9
A01p29270 Brassica napus HOM05D006564 ORTHO05D007772 7.9e-22 108.6 328 29.9
TAR374G1125 Trochodendron aralioides HOM05D006564 ORTHO05D007772 7.9e-22 108.6 180 38.3
Actinidia01700 Actinidia chinensis HOM05D006564 ORTHO05D007772 3.9e-21 106.3 109 51.4
AL2G16230 Arabidopsis lyrata HOM05D006564 ORTHO05D007772 8.7e-21 105.1 132 45.5
unitig_744.g23977 Utricularia gibba HOM05D006564 ORTHO05D007772 8.7e-21 105.1 106 55.7
ClCG08G017970 Citrullus lanatus HOM05D006564 ORTHO05D007772 9.0e-18 95.1 133 42.9
ClCG08G018020 Citrullus lanatus HOM05D006564 ORTHO05D007772 1.0e-16 91.7 133 40.6
ATR1091G047 Amborella trichopoda HOM05D006564 ORTHO05D007772 1.7e-16 90.9 107 48.6
Sed0020482 Sechium edule HOM05D006564 ORTHO05D007772 1.7e-16 90.9 122 42.6
CsaV3_2G024630 Cucumis sativus L. HOM05D006564 ORTHO05D007772 6.5e-16 89.0 133 39.1
MELO3C010665.2 Cucumis melo HOM05D006564 ORTHO05D007772 8.5e-16 88.6 133 39.1
SEGI_36736 Sequoiadendron giganteum HOM05D006564 ORTHO05D007772 9.4e-15 85.1 98 40.8
FAN07G0775 Fragaria x ananassa HOM05D006564 ORTHO05D007772 3.0e-13 80.1 315 27.9
SHI17558 Sapria himalayana HOM05D006564 ORTHO05D007772 3.0e-13 80.1 86 48.8
Zm00001eb227420 Zea mays HOM05D006564 ORTHO05D007772 1.5e-12 77.8 124 40.3
CDE07G0681 Ceratophyllum demersum HOM05D006564 ORTHO05D007772 2.0e-12 77.4 219 28.8
Migut.E00617 Erythranthe guttata HOM05D006564 ORTHO05D007772 6.3e-11 72.4 132 37.9
CDE06G0043 Ceratophyllum demersum HOM05D006564 ORTHO05D007772 1.4e-10 71.2 81 49.4
Lj3A1053G47 Lonicera japonica HOM05D006564 ORTHO05D007772 2.6e-09 67.0 131 37.4
Thecc.02G252200 Theobroma cacao HOM05D006564 ORTHO05D007772 5.9e-09 65.9 152 34.2
Actinidia01701 Actinidia chinensis HOM05D006564 ORTHO05D007772 7.7e-09 65.5 115 40.9
FvH4_4g34180 Fragaria vesca HOM05D006564 ORTHO05D007772 1.3e-08 64.7 135 34.8
RcHm_v2.0_Chr4g0443691 Rosa chinensis HOM05D006564 ORTHO05D007772 2.2e-08 63.9 115 39.1
CiPaw.05G152600 Carya illinoinensis HOM05D006564 ORTHO05D007772 2.5e-07 60.5 247 27.5
HPP92_021828 Vanilla planifolia HOM05D006564 ORTHO05D007772 2.5e-07 60.5 257 26.5
FAN17G1546 Fragaria x ananassa HOM05D006564 ORTHO05D007772 7.2e-07 58.9 115 36.5
Glyma.02G035501 Glycine max HOM05D006564 ORTHO05D007772 7.9e-06 55.5 204 27.0
Lalb_Chr05g0216821 Lupinus albus HOM05D006564 ORTHO05D007772 7.9e-06 55.5 131 32.1


User provided reference genes

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