Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGSC0003DMG401022694 Solanum tuberosum HOM05D005815 ORTHO05D007023 1.4e-201 706.1 342 100.0
Solyc01g008930.4 Solanum lycopersicum HOM05D005815 ORTHO05D007023 9.4e-179 630.2 343 89.2
CAN.G379.23 Capsicum annuum HOM05D005815 ORTHO05D007023 1.6e-170 602.8 352 84.7
Peaxi162Scf00050g01211 Petunia axillaris HOM05D005815 ORTHO05D007023 2.9e-164 582.0 351 81.5
Nitab4.5_0000718g0060 Nicotiana tabacum HOM05D005815 ORTHO05D007023 1.8e-161 572.8 331 84.6
Sopen01g004420 Solanum pennellii HOM05D005815 ORTHO05D007023 3.0e-140 502.3 255 93.3
Dinv36194 Davidia involucrata HOM05D005815 ORTHO05D007023 1.7e-132 476.5 287 76.0
Actinidia16359 Actinidia chinensis HOM05D005815 ORTHO05D007023 3.8e-127 458.8 290 70.7
Migut.N02363 Erythranthe guttata HOM05D005815 ORTHO05D007023 6.4e-127 458.0 327 66.4
CSS0034758 Camellia sinensis var. sinensis HOM05D005815 ORTHO05D007023 1.1e-126 457.2 287 71.1
CSS0042266 Camellia sinensis var. sinensis HOM05D005815 ORTHO05D007023 3.2e-126 455.7 287 70.7
Aqoxy2G00303 Aquilegia oxysepala HOM05D005815 ORTHO05D007023 5.4e-126 454.9 318 67.6
Gohir.A13G217700 Gossypium hirsutum HOM05D005815 ORTHO05D007023 9.3e-126 454.1 288 72.6
Cc01_g05830 Coffea canephora HOM05D005815 ORTHO05D007023 2.1e-125 453.0 303 69.0
Potri.001G253700 Populus trichocarpa HOM05D005815 ORTHO05D007023 7.8e-125 451.1 287 73.2
Gohir.D13G221350 Gossypium hirsutum HOM05D005815 ORTHO05D007023 1.0e-124 450.7 288 71.9
Gorai.013G252400 Gossypium raimondii HOM05D005815 ORTHO05D007023 1.3e-124 450.3 288 72.2
Thecc.09G243800 Theobroma cacao HOM05D005815 ORTHO05D007023 2.8e-122 442.6 304 67.1
Potri.009G048000 Populus trichocarpa HOM05D005815 ORTHO05D007023 3.6e-122 442.2 285 72.6
PGR119G0840 Punica granatum HOM05D005815 ORTHO05D007023 6.2e-122 441.4 297 69.4
TAR369G0618 Trochodendron aralioides HOM05D005815 ORTHO05D007023 8.1e-122 441.0 308 67.9
GSVIVG01037233001 Vitis vinifera HOM05D005815 ORTHO05D007023 1.1e-121 440.7 286 69.9
Sabra16G0154400 Salix brachista HOM05D005815 ORTHO05D007023 2.4e-121 439.5 306 68.6
Manes.02G142200 Manihot esculenta HOM05D005815 ORTHO05D007023 1.5e-120 436.8 318 66.7
Ciclev10015899m.g Citrus clementina HOM05D005815 ORTHO05D007023 2.6e-120 436.0 284 70.1
Eucgr.J00724 Eucalyptus grandis HOM05D005815 ORTHO05D007023 5.8e-120 434.9 287 69.3
Atru.chr3.3156 Acer truncatum HOM05D005815 ORTHO05D007023 7.6e-120 434.5 286 70.3
Rhsim13G0216400 Rhododendron simsii HOM05D005815 ORTHO05D007023 9.9e-120 434.1 315 64.1
TWI79G0828 Tripterygium wilfordii HOM05D005815 ORTHO05D007023 1.7e-119 433.3 299 66.9
Prupe.4G258500 Prunus persica HOM05D005815 ORTHO05D007023 2.2e-119 433.0 285 69.8
PSO384G1390 Papaver somniferum HOM05D005815 ORTHO05D007023 4.9e-119 431.8 314 62.7
PSO339G6039 Papaver somniferum HOM05D005815 ORTHO05D007023 8.4e-119 431.0 309 64.1
Atru.chr3.2823 Acer truncatum HOM05D005815 ORTHO05D007023 1.4e-118 430.3 324 63.3
FvH4_3g28130 Fragaria vesca HOM05D005815 ORTHO05D007023 1.4e-118 430.3 285 68.4
FAN11G0714 Fragaria x ananassa HOM05D005815 ORTHO05D007023 2.4e-118 429.5 285 68.4
CANSAT54G2776 Cannabis sativa HOM05D005815 ORTHO05D007023 5.4e-118 428.3 282 69.5
MSTRG.17626 Avicennia marina HOM05D005815 ORTHO05D007023 9.3e-118 427.6 336 60.7
CiPaw.13G152800 Carya illinoinensis HOM05D005815 ORTHO05D007023 4.6e-117 425.2 290 67.2
Lsat_1_v5_gn_3_113801 Lactuca sativa HOM05D005815 ORTHO05D007023 5.1e-116 421.8 293 68.9
RcHm_v2.0_Chr5g0050821 Rosa chinensis HOM05D005815 ORTHO05D007023 6.7e-116 421.4 283 68.6
HanXRQChr03g0090721 Helianthus annuus HOM05D005815 ORTHO05D007023 3.3e-115 419.1 286 68.2
Hma1.2p1_2660F.1_g326385 Hydrangea macrophylla HOM05D005815 ORTHO05D007023 3.3e-115 419.1 260 71.9
CsaV3_1G043160 Cucumis sativus L. HOM05D005815 ORTHO05D007023 1.6e-114 416.8 288 66.7
Glyma.02G304700 Glycine max HOM05D005815 ORTHO05D007023 1.1e-113 414.1 284 67.6
arahy.Tifrunner.gnm1.ann1.VEUG4Z Arachis hypogaea HOM05D005815 ORTHO05D007023 2.4e-113 412.9 297 65.0
EL10Ac3g06915 Beta vulgaris HOM05D005815 ORTHO05D007023 6.9e-113 411.4 320 62.5
Lalb_Chr04g0247551 Lupinus albus HOM05D005815 ORTHO05D007023 3.4e-112 409.1 326 61.3
LjContig00081g0007858 Lotus japonicus HOM05D005815 ORTHO05D007023 4.5e-112 408.7 285 66.3
Sed0013061 Sechium edule HOM05D005815 ORTHO05D007023 4.5e-112 408.7 288 64.6
Sc26g0004090 Simmondsia chinensis HOM05D005815 ORTHO05D007023 5.8e-112 408.3 288 64.9
arahy.Tifrunner.gnm1.ann1.CPT0CW Arachis hypogaea HOM05D005815 ORTHO05D007023 7.6e-112 407.9 310 62.3
Lalb_Chr04g0247351 Lupinus albus HOM05D005815 ORTHO05D007023 9.9e-112 407.5 322 61.8
Nn2g14945 Nelumbo nucifera HOM05D005815 ORTHO05D007023 1.7e-111 406.8 290 66.2
Medtr5g097080 Medicago truncatula HOM05D005815 ORTHO05D007023 1.1e-110 404.1 284 65.8
TPR.G1255 Trifolium pratense HOM05D005815 ORTHO05D007023 5.5e-110 401.7 281 66.9
THA.LOC104799118 Tarenaya hassleriana HOM05D005815 ORTHO05D007023 2.1e-109 399.8 285 66.0
Sp3g07570 Schrenkiella parvula HOM05D005815 ORTHO05D007023 3.5e-109 399.1 339 56.9
CDE04G3352 Ceratophyllum demersum HOM05D005815 ORTHO05D007023 6.0e-109 398.3 294 63.3
COL.COLO4_07231 Corchorus olitorius HOM05D005815 ORTHO05D007023 1.0e-108 397.5 255 70.2
Cpa.g.sc84.16 Carica papaya HOM05D005815 ORTHO05D007023 3.0e-108 396.0 250 73.6
unitig_21.g20897 Utricularia gibba HOM05D005815 ORTHO05D007023 1.5e-107 393.7 335 55.5
AL3G20230 Arabidopsis lyrata HOM05D005815 ORTHO05D007023 9.6e-107 391.0 284 62.7
CARHR083510 Cardamine hirsuta HOM05D005815 ORTHO05D007023 1.3e-106 390.6 284 63.4
MD03G1169100 Malus domestica HOM05D005815 ORTHO05D007023 1.3e-106 390.6 249 71.5
C03p43800 Brassica napus HOM05D005815 ORTHO05D007023 3.7e-106 389.0 284 62.3
BcaB04g18547 Brassica carinata HOM05D005815 ORTHO05D007023 4.8e-106 388.7 337 55.8
DCAR_023769 Daucus carota HOM05D005815 ORTHO05D007023 4.8e-106 388.7 256 68.0
BcaC01g04214 Brassica carinata HOM05D005815 ORTHO05D007023 1.1e-105 387.5 284 62.0
BolC5t34532H Brassica oleracea HOM05D005815 ORTHO05D007023 1.1e-105 387.5 284 62.3
ATR0721G178 Amborella trichopoda HOM05D005815 ORTHO05D007023 1.4e-105 387.1 261 65.5
AT3G09150 Arabidopsis thaliana HOM05D005815 ORTHO05D007023 1.8e-105 386.7 335 56.4
A03p36140 Brassica napus HOM05D005815 ORTHO05D007023 1.8e-105 386.7 284 62.0
Aa31LG3G1660 Aethionema arabicum HOM05D005815 ORTHO05D007023 3.1e-105 386.0 284 61.6
Thhalv10011657m.g Eutrema salsugineum HOM05D005815 ORTHO05D007023 3.1e-105 386.0 284 61.6
Carub.0003s0829 Capsella rubella HOM05D005815 ORTHO05D007023 9.0e-105 384.4 325 57.2
SGA_v2.0_scaffold271G46330 Striga asiatica HOM05D005815 ORTHO05D007023 1.2e-104 384.0 320 60.0
BcaC05g29644 Brassica carinata HOM05D005815 ORTHO05D007023 2.0e-104 383.3 284 60.9
C05p58790 Brassica napus HOM05D005815 ORTHO05D007023 2.6e-104 382.9 284 61.3
Lj1A304T23 Lonicera japonica HOM05D005815 ORTHO05D007023 3.4e-104 382.5 219 77.2
BraA05t22757Z Brassica rapa HOM05D005815 ORTHO05D007023 4.5e-104 382.1 284 61.6
Ca_06446_v3 Cicer arietinum L. HOM05D005815 ORTHO05D007023 3.5e-101 372.5 247 69.2
Zm00001eb363080 Zea mays HOM05D005815 ORTHO05D007023 1.0e-100 370.9 295 60.7
Phvul.008G284200 Phaseolus vulgaris HOM05D005815 ORTHO05D007023 2.5e-99 366.3 247 67.2
BraA03t12785Z Brassica rapa HOM05D005815 ORTHO05D007023 1.4e-94 350.5 264 61.0
BolC3t16647H Brassica oleracea HOM05D001932 ORTHO05D007023 2.5e-94 349.7 258 61.6
AUR62012030 Chenopodium quinoa HOM05D005815 ORTHO05D007023 4.2e-94 349.0 324 54.6
Psat2g004880 Pisum sativum HOM05D005815 ORTHO05D007023 9.7e-91 337.8 235 68.9
A05p39740 Brassica napus HOM05D005815 ORTHO05D007023 3.1e-89 332.8 284 55.6
FAN21G0849 Fragaria x ananassa HOM05D005815 ORTHO05D007023 3.1e-89 332.8 285 56.5
FAN16G3704 Fragaria x ananassa HOM05D005815 ORTHO05D007023 9.1e-89 331.3 285 56.5
Glyma.14G009100 Glycine max HOM05D005815 ORTHO05D007023 1.5e-88 330.5 286 57.7
ECA240G4129 Erigeron canadensis HOM05D000005 ORTHO05D000012 2.1e-85 320.1 203 71.4
Duzib150G0890 Durio zibethinus HOM05D005815 ORTHO05D007023 7.9e-85 318.2 264 60.2
AUR62040930 Chenopodium quinoa HOM05D005815 ORTHO05D007023 1.1e-83 314.3 307 52.8
Pp3c13_10580 Physcomitrium patens HOM05D005815 ORTHO05D007023 2.0e-83 313.5 278 50.4
Hma1.2p1_2660F.1_g326395 Hydrangea macrophylla HOM05D005815 ORTHO05D007023 1.1e-81 307.8 189 72.5
Duzib150G1254 Durio zibethinus HOM05D005815 ORTHO05D007023 1.5e-80 303.9 339 47.8
AagrBONN_evm.TU.Sc2ySwM_344.3747 Anthoceros agrestis HOM05D005815 ORTHO05D007023 1.0e-79 301.2 292 48.6
MELO3C029500.2 Cucumis melo HOM05D005815 ORTHO05D007023 2.2e-79 300.1 285 53.0
Nitab4.5_0009172g0010 Nicotiana tabacum HOM05D005815 ORTHO05D007023 2.9e-79 299.7 208 76.9
ClCG03G012900 Citrullus lanatus HOM05D005815 ORTHO05D007023 1.4e-78 297.4 564 33.5
AUR62015366 Chenopodium quinoa HOM05D005815 ORTHO05D007023 2.5e-78 296.6 189 69.3
Mapoly0015s0102 Marchantia polymorpha HOM05D005815 ORTHO05D007023 1.8e-76 290.4 284 47.5
Nitab4.5_0009172g0020 Nicotiana tabacum HOM05D005815 ORTHO05D007023 3.9e-76 289.3 153 86.3
SMO353G0322 Selaginella moellendorffii HOM05D005815 ORTHO05D007023 3.9e-76 289.3 256 50.8
Dinv36196 Davidia involucrata HOM05D005815 ORTHO05D007023 3.1e-73 279.6 163 75.5
FAN25G3713 Fragaria x ananassa HOM05D005815 ORTHO05D007023 7.2e-70 268.5 297 48.1
QL01p017754 Quercus lobata HOM05D005815 ORTHO05D007023 8.5e-63 245.0 154 70.1
VMungo0647G0340 Vigna mungo HOM05D005815 ORTHO05D007023 7.2e-62 241.9 297 47.5
Nn2g14749 Nelumbo nucifera HOM05D005815 ORTHO05D007023 2.6e-59 233.4 245 51.4
vmacro04007 Vaccinium macrocarpon HOM05D005815 ORTHO05D007023 5.7e-59 232.3 166 65.7
Nn2g15997 Nelumbo nucifera HOM05D005815 ORTHO05D007023 2.2e-58 230.3 244 50.4
Hma1.2p1_1115F.1_g258840 Hydrangea macrophylla HOM05D005815 ORTHO05D007023 4.1e-57 226.1 179 59.8
arahy.Tifrunner.gnm1.ann1.9N81UM Arachis hypogaea HOM05D005815 ORTHO05D007023 7.7e-56 221.9 148 67.6
Eucgr.G00241 Eucalyptus grandis HOM05D005815 ORTHO05D007023 4.5e-48 196.1 232 48.7
CBR_g29537 Chara braunii HOM05D005815 ORTHO05D007023 6.8e-44 182.2 216 38.4
Eucgr.G00240 Eucalyptus grandis HOM05D005815 ORTHO05D007023 8.9e-44 181.8 195 50.3
SEGI_10447 Sequoiadendron giganteum HOM05D005815 ORTHO05D007023 9.8e-43 178.3 127 61.4
arahy.Tifrunner.gnm1.ann1.GN5QKJ Arachis hypogaea HOM05D005815 ORTHO05D007023 2.0e-40 170.6 148 56.1
Hund08152 Selenicereus undatus HOM05D005815 ORTHO05D007023 4.6e-40 169.5 115 65.2
Os01g0949400 Oryza sativa ssp. japonica HOM05D005815 ORTHO05D007023 1.8e-36 157.5 132 58.3
Ah.04g152490 Amaranthus hybridus HOM05D005815 ORTHO05D007023 5.8e-35 152.5 277 34.3
HanXRQChr09g0261041 Helianthus annuus HOM05D005815 ORTHO05D007023 2.2e-34 150.6 113 63.7
arahy.Tifrunner.gnm1.ann1.1FY4ZR Arachis hypogaea HOM05D004738 ORTHO05D007023 2.5e-30 137.1 100 63.0
arahy.Tifrunner.gnm1.ann1.24D4KD Arachis hypogaea HOM05D005815 ORTHO05D007023 2.1e-29 134.0 100 62.0
vmacro04006 Vaccinium macrocarpon HOM05D005815 ORTHO05D007023 4.0e-28 129.8 78 70.5
QL01p017749 Quercus lobata HOM05D005815 ORTHO05D007023 2.6e-27 127.1 100 63.0
Hma1.2p1_2660F.1_g326390 Hydrangea macrophylla HOM05D005815 ORTHO05D007023 1.9e-22 110.9 67 73.1
AL3G20260 Arabidopsis lyrata HOM05D005815 ORTHO05D007023 8.1e-21 105.5 76 59.2
Haze_13921 Corylus avellana HOM05D005815 ORTHO05D007023 3.4e-19 100.1 161 39.8
Actinidia24333 Actinidia chinensis HOM05D005815 ORTHO05D007023 1.7e-18 97.8 70 68.6
Eucgr.G00239 Eucalyptus grandis HOM05D005815 ORTHO05D007023 1.1e-14 85.1 85 51.8
Glyma.14G136300 Glycine max HOM05D005815 ORTHO05D007023 5.8e-11 72.8 71 57.7


User provided reference genes

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