Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGSC0003DMG400047231 Solanum tuberosum HOM05D002095 ORTHO05D002058 1.9e-124 449.1 220 100.0
PGSC0003DMG400025671 Solanum tuberosum HOM05D002095 ORTHO05D002058 1.4e-66 256.9 224 61.2
PGSC0003DMG400025672 Solanum tuberosum HOM05D002095 ORTHO05D002058 3.1e-66 255.8 224 62.9
PGSC0003DMG400013911 Solanum tuberosum HOM05D002095 ORTHO05D002058 8.5e-64 247.7 241 56.4
PGSC0003DMG400003284 Solanum tuberosum HOM05D002095 ORTHO05D002058 1.3e-59 233.8 224 58.0
Sopen09g001140 Solanum pennellii HOM05D002095 ORTHO05D002058 2.4e-50 203.0 225 53.8
Sopen09g001130 Solanum pennellii HOM05D002095 ORTHO05D002058 3.1e-50 202.6 222 53.2
Nitab4.5_0000901g0010 Nicotiana tabacum HOM05D002095 ORTHO05D002058 7.2e-39 164.9 232 42.2
Nitab4.5_0000625g0060 Nicotiana tabacum HOM05D002095 ORTHO05D002058 1.2e-38 164.1 232 41.8
Nitab4.5_0000143g0150 Nicotiana tabacum HOM05D002095 ORTHO05D002058 1.2e-28 131.0 218 37.6
Nitab4.5_0003626g0030 Nicotiana tabacum HOM05D002095 ORTHO05D002058 1.7e-27 127.1 215 37.2
PGSC0003DMG400041262 Solanum tuberosum HOM05D002095 ORTHO05D394923 2.2e-27 126.7 129 55.8
Solyc05g054080.3 Solanum lycopersicum HOM05D002095 ORTHO05D002058 3.1e-26 122.9 243 33.7
Sopen05g032570 Solanum pennellii HOM05D002095 ORTHO05D002058 3.1e-26 122.9 243 33.7
PGSC0003DMG400008462 Solanum tuberosum HOM05D002095 ORTHO05D002058 4.1e-26 122.5 243 33.7
Nitab4.5_0012929g0020 Nicotiana tabacum HOM05D002095 ORTHO05D002058 2.3e-21 106.7 243 32.1
Peaxi162Scf00990g00013 Petunia axillaris HOM05D002095 ORTHO05D002058 2.3e-21 106.7 224 32.1
CAN.G449.14 Capsicum annuum HOM05D002095 ORTHO05D002058 5.2e-21 105.5 227 32.2
Nitab4.5_0000699g0090 Nicotiana tabacum HOM05D002095 ORTHO05D002058 5.7e-20 102.1 208 36.5
Dinv07410 Davidia involucrata HOM05D002095 ORTHO05D002058 7.5e-20 101.7 179 35.2
Nitab4.5_0009725g0010 Nicotiana tabacum HOM05D002095 ORTHO05D002058 1.3e-19 100.9 220 35.5
Nitab4.5_0027831g0010 Nicotiana tabacum HOM05D002095 ORTHO05D002058 1.3e-19 100.9 220 35.5
CSS0017522 Camellia sinensis var. sinensis HOM05D002095 ORTHO05D002058 1.1e-18 97.8 215 32.6
Lj1A1240G33 Lonicera japonica HOM05D002095 ORTHO05D002058 1.4e-18 97.4 238 28.6
CSS0046522 Camellia sinensis var. sinensis HOM05D002095 ORTHO05D002058 4.1e-18 95.9 212 31.1
Oeu007170.1 Olea europaea HOM05D002095 ORTHO05D002058 5.4e-18 95.5 208 31.7
Nitab4.5_0001735g0080 Nicotiana tabacum HOM05D002095 ORTHO05D002058 1.6e-17 94.0 245 30.2
Manes.09G077200 Manihot esculenta HOM05D002095 ORTHO05D002058 7.8e-17 91.7 217 30.0
Peaxi162Scf00070g00319 Petunia axillaris HOM05D002095 ORTHO05D002058 2.3e-16 90.1 213 31.5
PGSC0003DMG400039014 Solanum tuberosum HOM05D002095 ORTHO05D395102 2.3e-16 90.1 95 55.8
Hma1.2p1_0657F.1_g197090 Hydrangea macrophylla HOM05D002095 ORTHO05D002058 3.0e-16 89.7 215 30.2
Dinv13971 Davidia involucrata HOM05D002095 ORTHO05D002058 7.3e-15 85.1 215 28.8
COL.COLO4_31893 Corchorus olitorius HOM05D002095 ORTHO05D002058 4.7e-14 82.4 219 27.9
Manes.08G068300 Manihot esculenta HOM05D002095 ORTHO05D002058 6.2e-14 82.0 217 28.1
TWI38G0020 Tripterygium wilfordii HOM05D002095 ORTHO05D002058 6.2e-14 82.0 217 29.0
Glyma.17G008400 Glycine max HOM05D002095 ORTHO05D002058 1.0e-13 81.3 214 26.6
Gorai.010G186800 Gossypium raimondii HOM05D002095 ORTHO05D002058 1.4e-13 80.9 217 26.7
HanXRQChr16g0516591 Helianthus annuus HOM05D002095 ORTHO05D002058 1.4e-13 80.9 210 25.2
TWI38G0135 Tripterygium wilfordii HOM05D002095 ORTHO05D002058 1.4e-13 80.9 217 27.2
arahy.Tifrunner.gnm1.ann1.WNC7YQ Arachis hypogaea HOM05D002095 ORTHO05D002058 1.8e-13 80.5 214 28.5
arahy.Tifrunner.gnm1.ann1.YREA25 Arachis hypogaea HOM05D002095 ORTHO05D002058 1.8e-13 80.5 214 28.5
Duzib160G0921 Durio zibethinus HOM05D002095 ORTHO05D002058 1.8e-13 80.5 219 27.4
Gohir.A06G153300 Gossypium hirsutum HOM05D002095 ORTHO05D002058 1.8e-13 80.5 217 26.7
Gohir.D06G160100 Gossypium hirsutum HOM05D002095 ORTHO05D002058 1.8e-13 80.5 217 26.7
Ciclev10014213m.g Citrus clementina HOM05D002095 ORTHO05D002058 2.3e-13 80.1 210 27.1
Lsat_1_v5_gn_4_61921 Lactuca sativa HOM05D002095 ORTHO05D002058 2.3e-13 80.1 207 28.0
RhsimUnG0110400 Rhododendron simsii HOM05D002095 ORTHO05D002058 2.3e-13 80.1 226 27.9
SalBow8G5099 Salvia bowleyana HOM05D002095 ORTHO05D002058 2.3e-13 80.1 221 29.0
vmacro03639 Vaccinium macrocarpon HOM05D002095 ORTHO05D002058 3.1e-13 79.7 215 27.9
vmacro23370 Vaccinium macrocarpon HOM05D002095 ORTHO05D002058 3.1e-13 79.7 215 27.9
Cpa.g.sc3792.1 Carica papaya HOM05D002095 ORTHO05D002058 4.0e-13 79.3 221 29.9
Rhsim13G0145500 Rhododendron simsii HOM05D002095 ORTHO05D002058 5.2e-13 79.0 224 27.2
PGSC0003DMG400028257 Solanum tuberosum HOM05D002095 ORTHO05D002058 5.2e-13 79.0 236 30.5
MSTRG.7165 Avicennia marina HOM05D002095 ORTHO05D002058 1.2e-12 77.8 213 30.5
Haze_06939 Corylus avellana HOM05D002095 ORTHO05D002058 2.0e-12 77.0 216 30.1
Migut.M01403 Erythranthe guttata HOM05D002095 ORTHO05D002058 2.0e-12 77.0 217 28.1
Psat4g004840 Pisum sativum HOM05D002095 ORTHO05D002058 2.6e-12 76.6 210 28.1
Sopen10g032940 Solanum pennellii HOM05D002095 ORTHO05D002058 2.6e-12 76.6 236 30.9
ECA234G2065 Erigeron canadensis HOM05D002095 ORTHO05D002058 3.4e-12 76.3 225 26.2
Glyma.07G265600 Glycine max HOM05D002095 ORTHO05D002058 3.4e-12 76.3 216 27.8
Glyma.07G265700 Glycine max HOM05D002095 ORTHO05D002058 3.4e-12 76.3 216 27.8
Solyc12g094560.2 Solanum lycopersicum HOM05D002095 ORTHO05D002058 3.4e-12 76.3 200 32.5
Duzib192G0198 Durio zibethinus HOM05D002095 ORTHO05D002058 4.4e-12 75.9 217 26.7
Potri.006G011701 Populus trichocarpa HOM05D002095 ORTHO05D002058 4.4e-12 75.9 210 26.7
Ca_21042_v3 Cicer arietinum L. HOM05D002095 ORTHO05D002058 7.5e-12 75.1 216 27.3
Solyc10g083470.2 Solanum lycopersicum HOM05D002095 ORTHO05D002058 7.5e-12 75.1 236 29.7
Sopen12g031470 Solanum pennellii HOM05D002095 ORTHO05D002058 7.5e-12 75.1 200 32.0
Thecc.06G234100 Theobroma cacao HOM05D002095 ORTHO05D002058 7.5e-12 75.1 219 26.5
Medtr4g133120 Medicago truncatula HOM05D002095 ORTHO05D002058 1.3e-11 74.3 217 28.1
Phvul.003G084200 Phaseolus vulgaris HOM05D002095 ORTHO05D002058 1.7e-11 73.9 214 25.7
Duzib235G1530 Durio zibethinus HOM05D002095 ORTHO05D002058 2.2e-11 73.6 221 26.2
QL05p069565 Quercus lobata HOM05D002095 ORTHO05D002058 2.2e-11 73.6 211 25.1
Sopen12g031460 Solanum pennellii HOM05D002095 ORTHO05D002058 2.2e-11 73.6 200 31.0
Eucgr.D01415 Eucalyptus grandis HOM05D002095 ORTHO05D002058 3.7e-11 72.8 222 23.9
Lj4g0028234 Lotus japonicus HOM05D002095 ORTHO05D002058 3.7e-11 72.8 214 27.6
QL05p069479 Quercus lobata HOM05D002095 ORTHO05D002058 3.7e-11 72.8 173 27.7
TAR626G0534 Trochodendron aralioides HOM05D002095 ORTHO05D002058 6.4e-11 72.0 220 25.5
RcHm_v2.0_Chr5g0001431 Rosa chinensis HOM05D002095 ORTHO05D002058 1.1e-10 71.2 201 28.9
CiPaw.10G078500 Carya illinoinensis HOM05D002095 ORTHO05D002058 1.4e-10 70.9 217 26.7
TPR.G37019 Trifolium pratense HOM05D002095 ORTHO05D002058 1.4e-10 70.9 213 27.7
arahy.Tifrunner.gnm1.ann1.M240R0 Arachis hypogaea HOM05D002095 ORTHO05D002058 2.4e-10 70.1 209 25.8
arahy.Tifrunner.gnm1.ann1.U26HEC Arachis hypogaea HOM05D002095 ORTHO05D002058 2.4e-10 70.1 209 25.8
CAN.G1039.12 Capsicum annuum HOM05D002095 ORTHO05D002058 2.4e-10 70.1 220 28.2
PSO675G0057 Papaver somniferum HOM05D002095 ORTHO05D002058 3.2e-10 69.7 208 26.0
QL05p069442 Quercus lobata HOM05D002095 ORTHO05D002058 3.2e-10 69.7 207 25.1
HanXRQChr05g0129121 Helianthus annuus HOM05D002095 ORTHO05D002058 4.1e-10 69.3 207 27.1
THA.LOC104806332 Tarenaya hassleriana HOM05D002095 ORTHO05D002058 4.1e-10 69.3 209 26.3
CAN.G208.16 Capsicum annuum HOM05D002095 ORTHO05D002058 5.4e-10 68.9 158 28.5
MD05G1358400 Malus domestica HOM05D002095 ORTHO05D002058 5.4e-10 68.9 202 27.7
SGA_v2.0_scaffold7G03762 Striga asiatica HOM05D002095 ORTHO05D002058 5.4e-10 68.9 212 28.3
GSVIVG01003328001 Vitis vinifera HOM05D002095 ORTHO05D002058 5.4e-10 68.9 227 25.6
FvH4_3g00910 Fragaria vesca HOM05D002095 ORTHO05D002058 7.0e-10 68.6 226 26.5
THA.LOC104813609 Tarenaya hassleriana HOM05D002095 ORTHO05D002058 7.0e-10 68.6 220 25.5
Lalb_Chr18g0056991 Lupinus albus HOM05D002095 ORTHO05D002058 1.2e-09 67.8 229 28.4
PGSC0003DMG400029319 Solanum tuberosum HOM05D002095 ORTHO05D002058 1.2e-09 67.8 222 33.3
FAN25G0912 Fragaria x ananassa HOM05D002095 ORTHO05D002058 1.6e-09 67.4 224 25.0
Oeu009397.1 Olea europaea HOM05D002095 ORTHO05D002058 1.6e-09 67.4 213 26.3
CAN.G208.17 Capsicum annuum HOM05D002095 ORTHO05D002058 2.0e-09 67.0 212 30.2
CAN.G2440.1 Capsicum annuum HOM05D002095 ORTHO05D002058 2.0e-09 67.0 212 30.2
CiPaw.09G103000 Carya illinoinensis HOM05D002095 ORTHO05D002058 2.0e-09 67.0 216 28.7
Eucgr.D01414 Eucalyptus grandis HOM05D002095 ORTHO05D002058 2.0e-09 67.0 222 22.5
PSO541G2599 Papaver somniferum HOM05D002095 ORTHO05D002058 2.0e-09 67.0 208 26.0
PGSC0003DMG400036912 Solanum tuberosum HOM05D002095 ORTHO05D002058 2.0e-09 67.0 232 29.7
PGR004G2232 Punica granatum HOM05D002095 ORTHO05D002058 2.7e-09 66.6 218 24.8
Lj4g0004870 Lotus japonicus HOM05D002095 ORTHO05D002058 3.5e-09 66.2 210 27.6
CiPaw.12G015000 Carya illinoinensis HOM05D002095 ORTHO05D002058 6.0e-09 65.5 216 28.2
Potri.016G059800 Populus trichocarpa HOM05D002095 ORTHO05D002058 6.0e-09 65.5 210 25.2
Sopen11g007100 Solanum pennellii HOM05D002095 ORTHO05D002058 6.0e-09 65.5 182 27.5
Nn1g07412 Nelumbo nucifera HOM05D002095 ORTHO05D002058 1.0e-08 64.7 210 30.0
Sabra06G0009300 Salix brachista HOM05D002095 ORTHO05D002058 1.0e-08 64.7 209 27.8
ClCG01G021450 Citrullus lanatus HOM05D002095 ORTHO05D002058 1.7e-08 63.9 229 24.0
TWI63G1257 Tripterygium wilfordii HOM05D002095 ORTHO05D002058 1.7e-08 63.9 232 24.6
Eucgr.D01416 Eucalyptus grandis HOM05D002095 ORTHO05D002058 2.3e-08 63.5 222 23.4
MD10G1332500 Malus domestica HOM05D002095 ORTHO05D002058 2.3e-08 63.5 211 26.1
FAN21G3943 Fragaria x ananassa HOM05D002095 ORTHO05D002058 3.0e-08 63.2 226 24.3
Gohir.A05G174800 Gossypium hirsutum HOM05D002095 ORTHO05D002058 3.9e-08 62.8 207 25.6
Gohir.D05G177800 Gossypium hirsutum HOM05D002095 ORTHO05D002058 3.9e-08 62.8 209 25.4
Gorai.009G183200 Gossypium raimondii HOM05D002095 ORTHO05D002058 3.9e-08 62.8 209 25.4
Sabra16G0002500 Salix brachista HOM05D002095 ORTHO05D002058 3.9e-08 62.8 212 25.9
Prupe.4G009700 Prunus persica HOM05D002095 ORTHO05D002058 6.6e-08 62.0 211 25.6
Atru.chr1.2434 Acer truncatum HOM05D002095 ORTHO05D002058 8.6e-08 61.6 216 24.1
Cfa000093 Carpinus fangiana HOM05D002095 ORTHO05D002058 1.9e-07 60.5 193 28.0
MBI16_g31703_MAGBIO Magnolia biondii HOM05D002095 ORTHO05D002058 2.5e-07 60.1 232 22.8
Potri.016G012900 Populus trichocarpa HOM05D002095 ORTHO05D002058 2.5e-07 60.1 212 25.5
Sabra16G0015600 Salix brachista HOM05D002095 ORTHO05D002058 2.5e-07 60.1 210 25.7
QL05p069531 Quercus lobata HOM05D002095 ORTHO05D002058 3.3e-07 59.7 212 23.6
Cc09_g00830 Coffea canephora HOM05D002095 ORTHO05D002058 4.3e-07 59.3 178 29.8
MELO3C007439.2 Cucumis melo HOM05D002095 ORTHO05D002058 4.3e-07 59.3 231 23.8
unitig_32.g11053 Utricularia gibba HOM05D002095 ORTHO05D002058 9.5e-07 58.2 209 25.8
CsaV3_6G048470 Cucumis sativus L. HOM05D002095 ORTHO05D002058 1.6e-06 57.4 231 23.8
Solyc11g012340.1 Solanum lycopersicum HOM05D002095 ORTHO05D002058 1.6e-06 57.4 218 24.8
Eucgr.L02994 Eucalyptus grandis HOM05D002095 ORTHO05D002058 3.6e-06 56.2 195 24.6
CARHR253600 Cardamine hirsuta HOM05D002095 ORTHO05D002058 4.7e-06 55.8 206 25.2
AT4G12570 Arabidopsis thaliana HOM05D002095 ORTHO05D002058 6.2e-06 55.5 223 23.8


User provided reference genes

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