Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGSC0003DMG400043641 Solanum tuberosum HOM05D003084 ORTHO05D003580 8.7e-141 503.8 293 100.0
PGSC0003DMG400019022 Solanum tuberosum HOM05D003084 ORTHO05D003580 3.8e-104 382.1 243 96.7
Aa31LG1G17630 Aethionema arabicum HOM05D003084 ORTHO05D003580 8.8e-101 370.9 240 95.8
Ah.05g172970 Amaranthus hybridus HOM05D003084 ORTHO05D003580 8.8e-101 370.9 240 95.8
Ah.05g175190 Amaranthus hybridus HOM05D003084 ORTHO05D003580 8.8e-101 370.9 240 95.8
AL8G41630 Arabidopsis lyrata HOM05D003084 ORTHO05D003580 8.8e-101 370.9 240 95.8
AT5G64270 Arabidopsis thaliana HOM05D003084 ORTHO05D003580 8.8e-101 370.9 240 95.8
EL10Ac1g00935 Beta vulgaris HOM05D003084 ORTHO05D003580 8.8e-101 370.9 240 95.8
A09p08590 Brassica napus HOM05D003084 ORTHO05D003580 8.8e-101 370.9 240 95.8
C09p09710 Brassica napus HOM05D003084 ORTHO05D003580 8.8e-101 370.9 240 95.8
BolC9t53882H Brassica oleracea HOM05D003084 ORTHO05D003580 8.8e-101 370.9 240 95.8
BraA09t36508Z Brassica rapa HOM05D003084 ORTHO05D003580 8.8e-101 370.9 240 95.8
CAN.G128.100 Capsicum annuum HOM05D003084 ORTHO05D003580 8.8e-101 370.9 240 95.8
CARHR278180 Cardamine hirsuta HOM05D003084 ORTHO05D003580 8.8e-101 370.9 240 95.8
AUR62004235 Chenopodium quinoa HOM05D003084 ORTHO05D003580 8.8e-101 370.9 240 95.8
AUR62007850 Chenopodium quinoa HOM05D003084 ORTHO05D003580 8.8e-101 370.9 240 95.8
AUR62013613 Chenopodium quinoa HOM05D003084 ORTHO05D003580 8.8e-101 370.9 240 95.8
Cc02_g31230 Coffea canephora HOM05D003084 ORTHO05D003580 8.8e-101 370.9 240 95.8
Cc09_g09140 Coffea canephora HOM05D003084 ORTHO05D003580 8.8e-101 370.9 240 95.8
Thhalv10005618m.g Eutrema salsugineum HOM05D003084 ORTHO05D003580 8.8e-101 370.9 240 95.8
Nitab4.5_0000062g0290 Nicotiana tabacum HOM05D003084 ORTHO05D003580 8.8e-101 370.9 240 95.8
Nitab4.5_0003286g0010 Nicotiana tabacum HOM05D003084 ORTHO05D003580 8.8e-101 370.9 240 95.8
Oeu060755.1 Olea europaea HOM05D003084 ORTHO05D003580 8.8e-101 370.9 240 95.8
Peaxi162Scf00153g00138 Petunia axillaris HOM05D003084 ORTHO05D003580 8.8e-101 370.9 240 95.8
Sp2g27330 Schrenkiella parvula HOM05D003084 ORTHO05D003580 8.8e-101 370.9 240 95.8
Sc13g0006780 Simmondsia chinensis HOM05D003084 ORTHO05D003580 8.8e-101 370.9 240 95.8
Sopen10g031590 Solanum pennellii HOM05D003084 ORTHO05D003580 8.8e-101 370.9 240 95.8
PGSC0003DMG400028106 Solanum tuberosum HOM05D003084 ORTHO05D003580 8.8e-101 370.9 240 95.8
TWI23G0442 Tripterygium wilfordii HOM05D003084 ORTHO05D003580 8.8e-101 370.9 240 95.8
TWI59G0520 Tripterygium wilfordii HOM05D003084 ORTHO05D003580 8.8e-101 370.9 240 95.8
Carub.0008s2506 Capsella rubella HOM05D003084 ORTHO05D003580 1.2e-100 370.5 240 95.4
THA.LOC104799861 Tarenaya hassleriana HOM05D003084 ORTHO05D003580 2.0e-100 369.8 240 95.4
MD17G1162000 Malus domestica HOM05D003084 ORTHO05D003580 2.6e-100 369.4 241 95.4
MD17G1162100 Malus domestica HOM05D003084 ORTHO05D003580 2.6e-100 369.4 241 95.4
SGA_v2.0_scaffold106G30555 Striga asiatica HOM05D003084 ORTHO05D003580 4.4e-100 368.6 240 95.0
Atru.chr2.3187 Acer truncatum HOM05D003084 ORTHO05D003580 7.5e-100 367.9 240 95.4
Atru.chr2.3199 Acer truncatum HOM05D003084 ORTHO05D003580 7.5e-100 367.9 240 95.4
Actinidia38769 Actinidia chinensis HOM05D003084 ORTHO05D003580 7.5e-100 367.9 240 95.4
Actinidia38789 Actinidia chinensis HOM05D003084 ORTHO05D003580 7.5e-100 367.9 240 95.4
ATR0307G103 Amborella trichopoda HOM05D003084 ORTHO05D003580 7.5e-100 367.9 240 95.4
CSS0001529 Camellia sinensis var. sinensis HOM05D003084 ORTHO05D003580 7.5e-100 367.9 240 95.4
CiPaw.16G001600 Carya illinoinensis HOM05D003084 ORTHO05D003580 7.5e-100 367.9 240 95.4
CiPaw.16G001700 Carya illinoinensis HOM05D003084 ORTHO05D003580 7.5e-100 367.9 240 95.4
CDE02G2072 Ceratophyllum demersum HOM05D003084 ORTHO05D003580 7.5e-100 367.9 240 95.4
CDE09G0434 Ceratophyllum demersum HOM05D003084 ORTHO05D003580 7.5e-100 367.9 240 95.4
ClCG10G009340 Citrullus lanatus HOM05D003084 ORTHO05D003580 7.5e-100 367.9 240 95.4
Ciclev10010658m.g Citrus clementina HOM05D003084 ORTHO05D003580 7.5e-100 367.9 240 95.4
COL.COLO4_32309 Corchorus olitorius HOM05D003084 ORTHO05D003580 7.5e-100 367.9 240 95.4
Haze_17408 Corylus avellana HOM05D003084 ORTHO05D003580 7.5e-100 367.9 240 95.4
MELO3C024822.2 Cucumis melo HOM05D003084 ORTHO05D003580 7.5e-100 367.9 240 95.4
CsaV3_4G009520 Cucumis sativus L. HOM05D003084 ORTHO05D003580 7.5e-100 367.9 240 95.4
DCAR_026599 Daucus carota HOM05D003084 ORTHO05D003580 7.5e-100 367.9 240 95.4
Dinv23897 Davidia involucrata HOM05D003084 ORTHO05D003580 7.5e-100 367.9 240 95.4
Dinv23905 Davidia involucrata HOM05D003084 ORTHO05D003580 7.5e-100 367.9 240 95.4
Duzib052G0048 Durio zibethinus HOM05D003084 ORTHO05D003580 7.5e-100 367.9 240 95.4
ECA233G4363 Erigeron canadensis HOM05D003084 ORTHO05D003580 7.5e-100 367.9 240 95.4
FvH4_2g14010 Fragaria vesca HOM05D003084 ORTHO05D003580 7.5e-100 367.9 240 95.4
FAN20G2309 Fragaria x ananassa HOM05D003084 ORTHO05D003580 7.5e-100 367.9 240 95.4
FAN24G1613 Fragaria x ananassa HOM05D003084 ORTHO05D003580 7.5e-100 367.9 240 95.4
FAN27G2201 Fragaria x ananassa HOM05D003084 ORTHO05D003580 7.5e-100 367.9 240 95.4
Gohir.A12G015800 Gossypium hirsutum HOM05D003084 ORTHO05D003580 7.5e-100 367.9 240 95.4
Gohir.D12G016100 Gossypium hirsutum HOM05D003084 ORTHO05D003580 7.5e-100 367.9 240 95.4
Gorai.008G016300 Gossypium raimondii HOM05D003084 ORTHO05D003580 7.5e-100 367.9 240 95.4
Hma1.2p1_0996F.1_g245870 Hydrangea macrophylla HOM05D003084 ORTHO05D003580 7.5e-100 367.9 240 95.4
Lsat_1_v5_gn_6_59920 Lactuca sativa HOM05D003084 ORTHO05D003580 7.5e-100 367.9 240 95.4
Lj3P537T27 Lonicera japonica HOM05D003084 ORTHO05D003580 7.5e-100 367.9 240 95.4
Lj3P547T47 Lonicera japonica HOM05D003084 ORTHO05D003580 7.5e-100 367.9 240 95.4
MBI14_g36930_MAGBIO Magnolia biondii HOM05D003084 ORTHO05D003580 7.5e-100 367.9 240 95.4
Manes.10G104400 Manihot esculenta HOM05D003084 ORTHO05D003580 7.5e-100 367.9 240 95.4
Nn4g23295 Nelumbo nucifera HOM05D003084 ORTHO05D003580 7.5e-100 367.9 240 95.4
PSO063G3636 Papaver somniferum HOM05D003084 ORTHO05D003580 7.5e-100 367.9 240 95.4
PSO832G0894 Papaver somniferum HOM05D003084 ORTHO05D003580 7.5e-100 367.9 240 95.4
Potri.001G310900 Populus trichocarpa HOM05D003084 ORTHO05D003580 7.5e-100 367.9 240 95.4
Potri.017G050800 Populus trichocarpa HOM05D003084 ORTHO05D003580 7.5e-100 367.9 240 95.4
Prupe.8G065000 Prunus persica HOM05D003084 ORTHO05D003580 7.5e-100 367.9 240 95.4
PGR142G4455 Punica granatum HOM05D003084 ORTHO05D003580 7.5e-100 367.9 240 95.4
QL12p003834 Quercus lobata HOM05D003084 ORTHO05D003580 7.5e-100 367.9 240 95.4
RhsimUnG0019800 Rhododendron simsii HOM05D003084 ORTHO05D003580 7.5e-100 367.9 240 95.4
RcHm_v2.0_Chr6g0275901 Rosa chinensis HOM05D003084 ORTHO05D003580 7.5e-100 367.9 240 95.4
Sabra16G0196500 Salix brachista HOM05D003084 ORTHO05D003580 7.5e-100 367.9 240 95.4
SEGI_22402 Sequoiadendron giganteum HOM05D003084 ORTHO05D003580 7.5e-100 367.9 240 95.4
Thecc.02G134200 Theobroma cacao HOM05D003084 ORTHO05D003580 7.5e-100 367.9 240 95.4
MBI04_g36083_MAGBIO Magnolia biondii HOM05D003084 ORTHO05D003580 9.8e-100 367.5 240 95.0
Os02g0146400 Oryza sativa ssp. japonica HOM05D003084 ORTHO05D003580 9.8e-100 367.5 240 95.0
Sabra17G0037200 Salix brachista HOM05D003084 ORTHO05D003580 9.8e-100 367.5 240 95.0
Sabra17G0042500 Salix brachista HOM05D003084 ORTHO05D003580 9.8e-100 367.5 240 95.0
vmacro07762 Vaccinium macrocarpon HOM05D003084 ORTHO05D003580 9.8e-100 367.5 240 95.0
Zm00001eb208060 Zea mays HOM05D003084 ORTHO05D003580 9.8e-100 367.5 240 95.0
Zm00001eb232170 Zea mays HOM05D003084 ORTHO05D003580 9.8e-100 367.5 240 95.0
AagrBONN_evm.TU.Sc2ySwM_362.2841 Anthoceros agrestis HOM05D003084 ORTHO05D003580 1.7e-99 366.7 240 95.0
Aqoxy2G00351 Aquilegia oxysepala HOM05D003084 ORTHO05D003580 1.7e-99 366.7 240 95.0
arahy.Tifrunner.gnm1.ann1.4W8ZMG Arachis hypogaea HOM05D003084 ORTHO05D003580 1.7e-99 366.7 240 95.0
arahy.Tifrunner.gnm1.ann1.PVIH4H Arachis hypogaea HOM05D003084 ORTHO05D003580 1.7e-99 366.7 240 95.0
CBR_g38933 Chara braunii HOM05D003084 ORTHO05D003580 1.7e-99 366.7 240 95.0
Ca_00144_v3 Cicer arietinum L. HOM05D003084 ORTHO05D003580 1.7e-99 366.7 240 95.0
Glyma.15G083300 Glycine max HOM05D003084 ORTHO05D003580 1.7e-99 366.7 240 95.0
Lj6g0000948 Lotus japonicus HOM05D003084 ORTHO05D003580 1.7e-99 366.7 240 95.0
Lalb_Chr15g0090381 Lupinus albus HOM05D003084 ORTHO05D003580 1.7e-99 366.7 240 95.0
Lalb_Chr18g0060491 Lupinus albus HOM05D003084 ORTHO05D003580 1.7e-99 366.7 240 95.0
Mapoly0134s0023 Marchantia polymorpha HOM05D003084 ORTHO05D003580 1.7e-99 366.7 240 95.0
Medtr2g009110 Medicago truncatula HOM05D003084 ORTHO05D003580 1.7e-99 366.7 240 95.0
Phvul.006G175600 Phaseolus vulgaris HOM05D003084 ORTHO05D003580 1.7e-99 366.7 240 95.0
Psat1g216360 Pisum sativum HOM05D003084 ORTHO05D003580 1.7e-99 366.7 240 95.0
Psat4g019320 Pisum sativum HOM05D003084 ORTHO05D003580 1.7e-99 366.7 240 95.0
Sed0019948 Sechium edule HOM05D003084 ORTHO05D003580 1.7e-99 366.7 240 95.0
TAR629G3161 Trochodendron aralioides HOM05D003084 ORTHO05D003580 1.7e-99 366.7 240 95.0
TAR636G3251 Trochodendron aralioides HOM05D003084 ORTHO05D003580 1.7e-99 366.7 240 95.0
CANSAT01G3215 Cannabis sativa HOM05D003084 ORTHO05D003580 2.2e-99 366.3 240 95.0
Migut.D02560 Erythranthe guttata HOM05D003084 ORTHO05D003580 2.2e-99 366.3 240 94.2
HanXRQChr02g0058761 Helianthus annuus HOM05D003084 ORTHO05D003580 2.8e-99 365.9 240 86.2
SMO134G0059 Selaginella moellendorffii HOM05D003084 ORTHO05D003580 2.8e-99 365.9 243 93.4
Migut.J01608 Erythranthe guttata HOM05D003084 ORTHO05D003580 3.7e-99 365.5 240 94.6
HPP92_010409 Vanilla planifolia HOM05D003084 ORTHO05D003580 4.8e-99 365.2 240 94.6
COL.COLO4_32308 Corchorus olitorius HOM05D003084 ORTHO05D003580 1.4e-98 363.6 240 94.2
arahy.Tifrunner.gnm1.ann1.6856EH Arachis hypogaea HOM05D003084 ORTHO05D003580 1.8e-98 363.2 240 94.2
BolC3t18459H Brassica oleracea HOM05D003084 ORTHO05D003580 1.8e-98 363.2 240 91.2
SHI54885 Sapria himalayana HOM05D003084 ORTHO05D003580 2.4e-98 362.8 240 94.2
HanXRQChr07g0185681 Helianthus annuus HOM05D003084 ORTHO05D003580 3.1e-98 362.5 240 93.8
VMungo0540G2012 Vigna mungo HOM05D003084 ORTHO05D003580 5.4e-98 361.7 240 94.2
Eucgr.I02637 Eucalyptus grandis HOM05D003084 ORTHO05D003580 7.0e-98 361.3 240 94.2
Pp3c11_14450 Physcomitrium patens HOM05D003084 ORTHO05D003580 7.0e-98 361.3 240 94.2
MSTRG.6294 Avicennia marina HOM05D003084 ORTHO05D003580 9.1e-98 360.9 238 94.1
unitig_744.g24164 Utricularia gibba HOM05D003084 ORTHO05D003580 1.6e-97 360.1 241 93.4
A06p30960 Brassica napus HOM05D003084 ORTHO05D003580 2.7e-97 359.4 240 90.4
BraA06t26038Z Brassica rapa HOM05D003084 ORTHO05D003580 2.7e-97 359.4 240 90.4
Carub.0013s0010 Capsella rubella HOM05D003084 ORTHO05D003580 7.7e-97 357.8 240 92.5
DCAR_017867 Daucus carota HOM05D003084 ORTHO05D003580 8.6e-96 354.4 240 91.7
C03p62000 Brassica napus HOM05D003084 ORTHO05D003580 1.0e-93 347.4 248 87.5
vmacro02485 Vaccinium macrocarpon HOM05D003084 ORTHO05D003580 3.0e-93 345.9 235 76.2
RcHm_v2.0_Chr5g0043941 Rosa chinensis HOM05D003084 ORTHO05D003580 1.2e-92 344.0 240 90.8
MCO09G793 Micromonas commoda HOM05D003084 ORTHO05D003580 1.5e-92 343.6 240 90.0
FvH4_3g24440 Fragaria vesca HOM05D003084 ORTHO05D003580 7.5e-92 341.3 240 89.6
FAN11G1592 Fragaria x ananassa HOM05D003084 ORTHO05D003580 7.5e-92 341.3 240 89.6
FAN21G2367 Fragaria x ananassa HOM05D003084 ORTHO05D003580 1.7e-91 340.1 240 89.6
DCAR_026292 Daucus carota HOM05D003084 ORTHO05D003580 2.2e-91 339.7 240 89.2
Cre12.g494100 Chlamydomonas reinhardtii HOM05D003084 ORTHO05D003580 4.1e-90 335.5 240 86.2
Os02g0478900 Oryza sativa ssp. japonica HOM05D003084 ORTHO05D003580 5.9e-89 331.6 240 86.2
ATR0618G025 Amborella trichopoda HOM05D003084 ORTHO05D003580 1.0e-88 330.9 237 73.8
Aqoxy3G02504 Aquilegia oxysepala HOM05D003084 ORTHO05D003580 5.0e-88 328.6 240 86.2
HPP92_019915 Vanilla planifolia HOM05D003084 ORTHO05D003580 3.3e-87 325.9 177 92.7
PGSC0003DMG400009195 Solanum tuberosum HOM05D003084 ORTHO05D003580 9.5e-87 324.3 290 75.5
HPP92_010380 Vanilla planifolia HOM05D003084 ORTHO05D003580 1.0e-85 320.9 177 91.0
PRCOL_00002641 Prasinoderma coloniale HOM05D003084 ORTHO05D003580 1.4e-85 320.5 240 81.7
SMO361G0072 Selaginella moellendorffii HOM05D003084 ORTHO05D003580 1.2e-84 317.4 240 77.1
SMO361G0653 Selaginella moellendorffii HOM05D003084 ORTHO05D003580 5.8e-84 315.1 240 77.1
Thhalv10024248m.g Eutrema salsugineum HOM05D003084 ORTHO05D003580 1.1e-82 310.8 240 84.6
Cfa022297 Carpinus fangiana HOM05D003084 ORTHO05D003580 2.0e-81 306.6 240 76.7
Haze_07018 Corylus avellana HOM05D003084 ORTHO05D003580 1.2e-76 290.8 246 65.9
Haze_26699 Corylus avellana HOM05D003084 ORTHO05D003580 2.6e-76 289.7 234 81.2
AUR62032335 Chenopodium quinoa HOM05D003084 ORTHO05D003580 1.1e-69 267.7 240 79.2
CBR_g21841 Chara braunii HOM05D003084 ORTHO05D003580 4.9e-67 258.8 234 76.9
HPP92_010359 Vanilla planifolia HOM05D003084 ORTHO05D003580 1.9e-66 256.9 136 92.6
QL09p053393 Quercus lobata HOM05D003084 ORTHO05D003580 2.7e-65 253.1 177 76.3
Glyma.13G229200 Glycine max HOM05D003084 ORTHO05D003580 1.9e-63 246.9 131 93.9
Actinidia28117 Actinidia chinensis HOM05D003084 ORTHO05D003580 2.0e-60 236.9 169 95.9
Dinv04118 Davidia involucrata HOM05D003084 ORTHO05D003580 2.6e-60 236.5 135 87.4
Atru.chr7.2124 Acer truncatum HOM05D003084 ORTHO05D003580 8.1e-54 214.9 155 96.8
MD12G1233800 Malus domestica HOM05D003084 ORTHO05D003580 1.4e-50 204.1 173 65.9
FAN15G1682 Fragaria x ananassa HOM05D003084 ORTHO05D003580 9.0e-45 184.9 138 97.1
BcaB04g19963 Brassica carinata HOM05D003084 ORTHO05D003580 1.8e-37 160.6 84 95.2
DCAR_028101 Daucus carota HOM05D003084 ORTHO05D003580 4.3e-31 139.4 122 63.1
TPR.G36215 Trifolium pratense HOM05D003084 ORTHO05D003580 5.3e-29 132.5 159 46.5
Atru.chr7.2125 Acer truncatum HOM05D003084 ORTHO05D003580 1.4e-26 124.4 64 93.8
BcaB04g19964 Brassica carinata HOM05D003084 ORTHO05D003580 2.7e-25 120.2 108 96.3
Sopen07g021280 Solanum pennellii HOM05D003084 ORTHO05D003580 1.9e-23 114.0 91 65.9
GSVIVG01025852001 Vitis vinifera HOM05D003084 ORTHO05D003580 6.3e-22 109.0 88 61.4
DCAR_024485 Daucus carota HOM05D003084 ORTHO05D003580 5.0e-19 99.4 77 67.5
Cc02_g08750 Coffea canephora HOM05D003084 ORTHO05D003580 2.5e-18 97.1 65 75.4
PGSC0003DMG400008051 Solanum tuberosum HOM05D006634 ORTHO05D008282 8.8e-08 62.0 37 78.4


User provided reference genes

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