Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGSC0003DMG400040737 Solanum tuberosum HOM05D004187 ORTHO05D004890 2.2e-63 245.4 115 100.0
PGSC0003DMG400039476 Solanum tuberosum HOM05D004187 ORTHO05D004890 1.6e-58 229.2 115 93.0
PGSC0003DMG400039782 Solanum tuberosum HOM05D004187 ORTHO05D004890 2.1e-53 212.2 110 90.9
PGSC0003DMG401028774 Solanum tuberosum HOM05D004187 ORTHO05D004890 9.6e-51 203.4 115 82.6
PGSC0003DMG402028774 Solanum tuberosum HOM05D004187 ORTHO05D004890 9.6e-51 203.4 115 82.6
Sopen10g014270 Solanum pennellii HOM05D004187 ORTHO05D004890 1.6e-50 202.6 115 82.6
Solyc10g045190.3 Solanum lycopersicum HOM05D004187 ORTHO05D004890 2.4e-49 198.7 115 81.7
Nitab4.5_0001792g0010 Nicotiana tabacum HOM05D004187 ORTHO05D004890 5.6e-43 177.6 115 69.6
Nitab4.5_0000050g0260 Nicotiana tabacum HOM05D004187 ORTHO05D004890 4.8e-42 174.5 115 68.7
Dinv25939 Davidia involucrata HOM05D004187 ORTHO05D004890 1.9e-38 162.5 109 65.1
Rhsim04G0199500 Rhododendron simsii HOM05D004187 ORTHO05D004890 3.2e-38 161.8 109 62.4
RcHm_v2.0_Chr4g0407591 Rosa chinensis HOM05D004187 ORTHO05D004890 2.7e-37 158.7 113 61.9
MSTRG.4047 Avicennia marina HOM05D004187 ORTHO05D004890 4.6e-37 157.9 109 64.2
FvH4_4g00760 Fragaria vesca HOM05D004187 ORTHO05D004890 4.6e-37 157.9 113 60.2
FAN12G2319 Fragaria x ananassa HOM05D004187 ORTHO05D004890 4.6e-37 157.9 113 60.2
FvH4_5g32450 Fragaria vesca HOM05D004187 ORTHO05D004890 2.3e-36 155.6 113 58.4
FAN18G3642 Fragaria x ananassa HOM05D004187 ORTHO05D004890 2.3e-36 155.6 113 58.4
FAN22G0369 Fragaria x ananassa HOM05D004187 ORTHO05D004890 2.3e-36 155.6 112 59.8
FAN13G2545 Fragaria x ananassa HOM05D004187 ORTHO05D004890 6.7e-36 154.1 113 58.4
Hma1.2p1_0207F.1_g088010 Hydrangea macrophylla HOM05D004187 ORTHO05D004890 6.7e-36 154.1 109 60.6
Thecc.04G235800 Theobroma cacao HOM05D002650 ORTHO05D002924 8.7e-36 153.7 109 56.9
MD16G1197500 Malus domestica HOM05D004187 ORTHO05D004890 1.1e-35 153.3 113 58.4
BcaB06g26379 Brassica carinata HOM05D004187 ORTHO05D004890 1.5e-35 152.9 112 61.6
Prupe.1G018500 Prunus persica HOM05D004187 ORTHO05D004890 1.9e-35 152.5 113 59.3
Thhalv10021679m.g Eutrema salsugineum HOM05D004187 ORTHO05D004890 2.5e-35 152.1 111 60.4
Actinidia40129 Actinidia chinensis HOM05D004187 ORTHO05D004890 3.3e-35 151.8 109 61.5
MELO3C006513.2 Cucumis melo HOM05D004187 ORTHO05D004890 4.3e-35 151.4 109 57.8
CsaV3_3G013040 Cucumis sativus L. HOM05D004187 ORTHO05D004890 4.3e-35 151.4 109 57.8
Rhsim02G0027200 Rhododendron simsii HOM05D004187 ORTHO05D004890 4.3e-35 151.4 107 59.8
Sed0024336 Sechium edule HOM05D004187 ORTHO05D004890 4.3e-35 151.4 109 57.8
Nitab4.5_0001547g0030 Nicotiana tabacum HOM05D004187 ORTHO05D004890 7.4e-35 150.6 115 60.9
SalBow2G2347 Salvia bowleyana HOM05D004187 ORTHO05D004890 7.4e-35 150.6 109 60.6
AL3G36980 Arabidopsis lyrata HOM05D004187 ORTHO05D004890 9.6e-35 150.2 113 58.4
THA.LOC104803042 Tarenaya hassleriana HOM05D004187 ORTHO05D004890 9.6e-35 150.2 109 58.7
TWI73G1209 Tripterygium wilfordii HOM05D004187 ORTHO05D004890 9.6e-35 150.2 109 59.6
Nitab4.5_0000085g0360 Nicotiana tabacum HOM05D004187 ORTHO05D004890 1.3e-34 149.8 115 60.0
Solyc09g082480.2 Solanum lycopersicum HOM05D004187 ORTHO05D004890 1.3e-34 149.8 115 57.4
Carub.0003s2284 Capsella rubella HOM05D004187 ORTHO05D004890 1.6e-34 149.4 108 61.1
Ca_24413_v3 Cicer arietinum L. HOM05D004187 ORTHO05D004890 1.6e-34 149.4 113 56.6
ClCG05G004990 Citrullus lanatus HOM05D004187 ORTHO05D004890 1.6e-34 149.4 109 56.9
TAR362G0393 Trochodendron aralioides HOM05D004187 ORTHO05D004890 1.6e-34 149.4 109 60.6
Haze_11210 Corylus avellana HOM05D004187 ORTHO05D004890 2.8e-34 148.7 109 61.5
Nn1g02390 Nelumbo nucifera HOM05D004187 ORTHO05D004890 2.8e-34 148.7 109 59.6
Sabra08G0118600 Salix brachista HOM05D004187 ORTHO05D004890 2.8e-34 148.7 109 56.9
QL06p001566 Quercus lobata HOM05D004187 ORTHO05D004890 3.7e-34 148.3 109 57.8
Atru.chr4.2417 Acer truncatum HOM05D004187 ORTHO05D004890 4.8e-34 147.9 111 55.9
CAN.G1402.3 Capsicum annuum HOM05D004187 ORTHO05D004890 4.8e-34 147.9 115 59.1
Phvul.002G043400 Phaseolus vulgaris HOM05D004187 ORTHO05D004890 4.8e-34 147.9 113 58.4
VMungo0251G0090 Vigna mungo HOM05D004187 ORTHO05D004890 4.8e-34 147.9 113 57.5
AUR62001090 Chenopodium quinoa HOM05D004187 ORTHO05D004890 6.2e-34 147.5 109 60.6
Eucgr.H03428 Eucalyptus grandis HOM05D004187 ORTHO05D004890 6.2e-34 147.5 109 60.6
Gohir.A10G118400 Gossypium hirsutum HOM05D004187 ORTHO05D004890 6.2e-34 147.5 109 56.0
Gorai.011G165600 Gossypium raimondii HOM05D004187 ORTHO05D004890 6.2e-34 147.5 109 56.0
SalBow2G0844 Salvia bowleyana HOM05D004187 ORTHO05D004890 8.1e-34 147.1 109 58.7
Aqoxy2G03437 Aquilegia oxysepala HOM05D004187 ORTHO05D004890 1.1e-33 146.7 109 59.6
Cfa008463 Carpinus fangiana HOM05D004187 ORTHO05D004890 1.1e-33 146.7 109 60.6
BcaC05g28028 Brassica carinata HOM05D004187 ORTHO05D004890 1.4e-33 146.4 112 58.9
C05p40440 Brassica napus HOM05D004187 ORTHO05D004890 1.4e-33 146.4 112 58.9
BolC5t32785H Brassica oleracea HOM05D004187 ORTHO05D004890 1.4e-33 146.4 112 58.9
Glyma.01G235900 Glycine max HOM05D004187 ORTHO05D004890 1.4e-33 146.4 113 55.8
Medtr5g006610 Medicago truncatula HOM05D004187 ORTHO05D004890 1.4e-33 146.4 113 54.9
Peaxi162Scf00092g00016 Petunia axillaris HOM05D004187 ORTHO05D004890 1.4e-33 146.4 108 61.1
CSS0045006 Camellia sinensis var. sinensis HOM05D004187 ORTHO05D004890 1.8e-33 146.0 109 58.7
Cc10_g08560 Coffea canephora HOM05D004187 ORTHO05D004890 1.8e-33 146.0 115 55.7
Lj3A731T58 Lonicera japonica HOM05D004187 ORTHO05D004890 1.8e-33 146.0 113 56.6
Sopen09g031340 Solanum pennellii HOM05D004187 ORTHO05D004890 1.8e-33 146.0 115 55.7
BcaC01g03429 Brassica carinata HOM05D004187 ORTHO05D004890 2.4e-33 145.6 112 59.8
BcaC01g03430 Brassica carinata HOM05D004187 ORTHO05D004890 2.4e-33 145.6 112 59.8
A03p42920 Brassica napus HOM05D004187 ORTHO05D004890 2.4e-33 145.6 112 59.8
C03p52670 Brassica napus HOM05D004187 ORTHO05D004890 2.4e-33 145.6 112 59.8
BolC3t17535H Brassica oleracea HOM05D004187 ORTHO05D004890 2.4e-33 145.6 112 59.8
BraA03t13436Z Brassica rapa HOM05D004187 ORTHO05D004890 2.4e-33 145.6 112 59.8
CSS0034976 Camellia sinensis var. sinensis HOM05D004187 ORTHO05D004890 2.4e-33 145.6 109 56.0
Atru.chr4.2392 Acer truncatum HOM05D004187 ORTHO05D004890 3.1e-33 145.2 111 55.0
arahy.Tifrunner.gnm1.ann1.Q4QH0F Arachis hypogaea HOM05D004187 ORTHO05D004890 3.1e-33 145.2 112 59.8
Glyma.11G007300 Glycine max HOM05D004187 ORTHO05D004890 3.1e-33 145.2 113 55.8
Sp3g20440 Schrenkiella parvula HOM05D004187 ORTHO05D004890 3.1e-33 145.2 112 58.0
AT3G22680 Arabidopsis thaliana HOM05D004187 ORTHO05D004890 4.0e-33 144.8 108 59.3
MBI11_g32998_MAGBIO Magnolia biondii HOM05D002650 ORTHO05D002924 4.0e-33 144.8 109 57.8
vmacro15360 Vaccinium macrocarpon HOM05D004187 ORTHO05D004890 4.0e-33 144.8 107 57.9
A05p26020 Brassica napus HOM05D004187 ORTHO05D004890 5.3e-33 144.4 112 58.9
Ciclev10005993m.g Citrus clementina HOM05D004187 ORTHO05D004890 5.3e-33 144.4 117 53.8
Duzib212G0360 Durio zibethinus HOM05D004187 ORTHO05D004890 5.3e-33 144.4 109 55.0
Manes.15G031200 Manihot esculenta HOM05D004187 ORTHO05D004890 5.3e-33 144.4 109 56.0
Sed0012407 Sechium edule HOM05D004187 ORTHO05D004890 5.3e-33 144.4 109 55.0
CANSAT78G1519 Cannabis sativa HOM05D004187 ORTHO05D004890 6.9e-33 144.1 109 56.0
Gohir.D10G148300 Gossypium hirsutum HOM05D004187 ORTHO05D004890 6.9e-33 144.1 109 56.0
Psat2g190440 Pisum sativum HOM05D004187 ORTHO05D004890 6.9e-33 144.1 113 55.8
Potri.008G155800 Populus trichocarpa HOM05D004187 ORTHO05D004890 9.0e-33 143.7 109 55.0
arahy.Tifrunner.gnm1.ann1.LSRC2Y Arachis hypogaea HOM05D004187 ORTHO05D004890 1.2e-32 143.3 112 58.9
CiPaw.02G122700 Carya illinoinensis HOM05D004187 ORTHO05D004890 2.0e-32 142.5 109 56.9
SGA_v2.0_scaffold191G40487 Striga asiatica HOM05D004187 ORTHO05D004890 2.0e-32 142.5 109 57.8
BraA05t21487Z Brassica rapa HOM05D004187 ORTHO05D004890 4.5e-32 141.4 112 58.0
LjContig00408g0013113 Lotus japonicus HOM05D004187 ORTHO05D004890 4.5e-32 141.4 113 56.6
Lalb_Chr05g0211101 Lupinus albus HOM05D004187 ORTHO05D004890 4.5e-32 141.4 113 54.9
TWI53G1349 Tripterygium wilfordii HOM05D004187 ORTHO05D004890 5.8e-32 141.0 108 57.4
arahy.Tifrunner.gnm1.ann1.8FXP11 Arachis hypogaea HOM05D004187 ORTHO05D004890 7.6e-32 140.6 109 59.6
COL.COLO4_21526 Corchorus olitorius HOM05D004187 ORTHO05D004890 7.6e-32 140.6 108 55.6
ECA233G0410 Erigeron canadensis HOM05D004187 ORTHO05D004890 7.6e-32 140.6 109 58.7
Migut.G00365 Erythranthe guttata HOM05D004187 ORTHO05D004890 7.6e-32 140.6 109 51.4
arahy.Tifrunner.gnm1.ann1.Q6C7EF Arachis hypogaea HOM05D004187 ORTHO05D004890 1.0e-31 140.2 111 58.6
CARHR098560 Cardamine hirsuta HOM05D004187 ORTHO05D004890 1.0e-31 140.2 107 55.1
ECA247G0434 Erigeron canadensis HOM05D000045 ORTHO05D004890 1.0e-31 140.2 109 58.7
FAN08G0419 Fragaria x ananassa HOM05D004187 ORTHO05D004890 1.0e-31 140.2 107 56.1
PGR129G0008 Punica granatum HOM05D004187 ORTHO05D004890 1.3e-31 139.8 115 52.2
PGR142G1722 Punica granatum HOM05D004187 ORTHO05D004890 1.3e-31 139.8 115 52.2
GSVIVG01018017001 Vitis vinifera HOM05D004187 ORTHO05D004890 1.3e-31 139.8 109 54.1
Sopen09g031300 Solanum pennellii HOM05D004187 ORTHO05D004890 2.2e-31 139.0 115 53.9
AUR62008916 Chenopodium quinoa HOM05D004187 ORTHO05D004890 3.8e-31 138.3 109 58.7
TPR.G37887 Trifolium pratense HOM05D004187 ORTHO05D004890 3.8e-31 138.3 113 54.9
Peaxi162Scf00245g00106 Petunia axillaris HOM05D004187 ORTHO05D004890 4.9e-31 137.9 101 62.4
Sc19g0004030 Simmondsia chinensis HOM05D004187 ORTHO05D004890 6.5e-31 137.5 109 53.2
Dinv03045 Davidia involucrata HOM05D004187 ORTHO05D004890 1.1e-30 136.7 108 55.6
ECA247G1582 Erigeron canadensis HOM05D004187 ORTHO05D004890 1.1e-30 136.7 109 56.9
Manes.03G175300 Manihot esculenta HOM05D004187 ORTHO05D004890 1.1e-30 136.7 109 53.2
Thhalv10017318m.g Eutrema salsugineum HOM05D004187 ORTHO05D004890 3.2e-30 135.2 112 54.5
Lsat_1_v5_gn_8_21341 Lactuca sativa HOM05D004187 ORTHO05D004890 3.2e-30 135.2 109 54.1
TAR633G0827 Trochodendron aralioides HOM05D004187 ORTHO05D004890 4.2e-30 134.8 109 57.8
Medtr5g006600 Medicago truncatula HOM05D004187 ORTHO05D004890 5.5e-30 134.4 113 53.1
HanXRQChr08g0219391 Helianthus annuus HOM05D004187 ORTHO05D004890 7.1e-30 134.0 109 56.0
THA.LOC104808564 Tarenaya hassleriana HOM05D004187 ORTHO05D004890 7.1e-30 134.0 109 51.4
Aa31LG3G2350 Aethionema arabicum HOM05D004187 ORTHO05D004890 2.1e-29 132.5 111 55.9
Psat2g190480 Pisum sativum HOM05D004187 ORTHO05D004890 3.5e-29 131.7 113 51.3
Ca_24412_v3 Cicer arietinum L. HOM05D004187 ORTHO05D004890 4.6e-29 131.3 113 52.2
Ca_30960_v3 Cicer arietinum L. HOM05D004187 ORTHO05D004890 4.6e-29 131.3 113 52.2
TPR.G37866 Trifolium pratense HOM05D004187 ORTHO05D004890 1.3e-28 129.8 113 50.4
Actinidia32414 Actinidia chinensis HOM05D004187 ORTHO05D004890 1.8e-28 129.4 105 52.4
AUR62001087 Chenopodium quinoa HOM05D004187 ORTHO05D004890 8.7e-28 127.1 92 59.8
DCAR_031726 Daucus carota HOM05D004187 ORTHO05D004890 8.7e-28 127.1 103 53.4
PSO210G5857 Papaver somniferum HOM05D004187 ORTHO05D004890 1.5e-27 126.3 109 48.6
unitig_22.g6822 Utricularia gibba HOM05D004187 ORTHO05D004890 1.5e-27 126.3 109 51.4
PSO170G4884 Papaver somniferum HOM05D004187 ORTHO05D004890 3.3e-27 125.2 109 48.6
PGSC0003DMG400013771 Solanum tuberosum HOM05D004187 ORTHO05D004890 3.3e-27 125.2 63 92.1
Thhalv10029384m.g Eutrema salsugineum HOM05D004187 ORTHO05D004890 7.4e-27 124.0 114 51.8
PGSC0003DMG400032269 Solanum tuberosum HOM05D004187 ORTHO05D004890 9.6e-27 123.6 90 61.1
HPP92_009615 Vanilla planifolia HOM05D004187 ORTHO05D004890 1.8e-25 119.4 103 48.5
ATR0665G390 Amborella trichopoda HOM05D004187 ORTHO05D004890 2.4e-25 119.0 111 47.7
QL08p059729 Quercus lobata HOM05D004187 ORTHO05D004890 9.0e-25 117.1 107 50.5
Rhsim03G0003800 Rhododendron simsii HOM05D004187 ORTHO05D004890 9.0e-25 117.1 107 48.6
CDE07G0031 Ceratophyllum demersum HOM05D004187 ORTHO05D004890 1.2e-24 116.7 103 49.5
Solyc09g082430.1 Solanum lycopersicum HOM05D004187 ORTHO05D004890 2.6e-24 115.5 90 55.6
Cfa001472 Carpinus fangiana HOM05D004187 ORTHO05D004890 1.7e-23 112.8 111 48.6
Prupe.2G235500 Prunus persica HOM05D004187 ORTHO05D004890 6.5e-23 110.9 107 45.8
Haze_17068 Corylus avellana HOM05D004187 ORTHO05D004890 8.4e-23 110.5 116 46.6
Solyc09g082420.1 Solanum lycopersicum HOM05D004187 ORTHO05D004890 1.4e-22 109.8 87 54.0
Sopen09g031290 Solanum pennellii HOM05D004187 ORTHO05D004890 1.4e-22 109.8 84 57.1
Potri.008G076500 Populus trichocarpa HOM05D004187 ORTHO05D004890 4.2e-22 108.2 108 45.4
RcHm_v2.0_Chr1g0367131 Rosa chinensis HOM05D004187 ORTHO05D004890 1.6e-21 106.3 98 51.0
Atru.chr7.913 Acer truncatum HOM05D004187 ORTHO05D004890 7.9e-21 104.0 114 43.9
COL.COLO4_15044 Corchorus olitorius HOM05D004187 ORTHO05D004890 1.8e-20 102.8 107 43.9
Manes.12G002301 Manihot esculenta HOM05D004187 ORTHO05D004890 3.0e-20 102.1 109 44.0
Atru.chr1.2916 Acer truncatum HOM05D004187 ORTHO05D004890 6.7e-20 100.9 105 44.8
Duzib114G0324 Durio zibethinus HOM05D004187 ORTHO05D004890 6.7e-20 100.9 107 42.1
PGSC0003DMG400032265 Solanum tuberosum HOM05D004187 ORTHO05D004890 1.9e-19 99.4 74 59.5
Solyc09g082440.1 Solanum lycopersicum HOM05D004187 ORTHO05D004890 5.7e-19 97.8 72 59.7
Lalb_Chr10g0091621 Lupinus albus HOM05D004187 ORTHO05D004890 6.3e-18 94.4 107 42.1
VMungo1383G1788 Vigna mungo HOM05D004187 ORTHO05D004890 2.6e-16 89.0 113 37.2
Nn6g35138 Nelumbo nucifera HOM05D004187 ORTHO05D004890 2.2e-15 85.9 109 42.2
Lj1g0009372 Lotus japonicus HOM05D004187 ORTHO05D004890 2.9e-15 85.5 107 38.3
Lj1g0019332 Lotus japonicus HOM05D004187 ORTHO05D004890 2.9e-15 85.5 107 38.3
Ca_12246_v3 Cicer arietinum L. HOM05D004187 ORTHO05D004890 3.8e-15 85.1 107 39.3
Phvul.008G010500 Phaseolus vulgaris HOM05D004187 ORTHO05D004890 6.5e-15 84.3 106 37.7
Atru.chr1.2920 Acer truncatum HOM05D004187 ORTHO05D004890 1.2e-13 80.1 106 40.6
Lj1g0011366 Lotus japonicus HOM05D004187 ORTHO05D004890 3.6e-13 78.6 107 35.5
Medtr5g006580 Medicago truncatula HOM05D004187 ORTHO05D004890 2.0e-11 72.8 114 34.2
Sabra10G0059200 Salix brachista HOM05D004187 ORTHO05D004890 2.0e-08 62.8 86 39.5
Lalb_Chr16g0376451 Lupinus albus HOM05D004187 ORTHO05D004890 2.5e-06 55.8 36 58.3


User provided reference genes

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