Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGSC0003DMG400036178 Solanum tuberosum HOM05D009449 ORTHO05D011243 6.0e-142 507.7 293 100.0
PGSC0003DMG400034504 Solanum tuberosum HOM05D009449 ORTHO05D011243 1.7e-88 330.1 201 78.6
Solyc12g042790.1 Solanum lycopersicum HOM05D009449 ORTHO05D011243 6.6e-80 301.6 194 71.6
Sopen00g005000 Solanum pennellii HOM05D009449 ORTHO05D011243 1.5e-79 300.4 243 75.3
PGSC0003DMG400035045 Solanum tuberosum HOM05D009449 ORTHO05D011243 2.9e-75 286.2 194 69.6
PGSC0003DMG400046216 Solanum tuberosum HOM05D009449 ORTHO05D011243 1.1e-61 241.1 169 71.6
CAN.G941.37 Capsicum annuum HOM05D009449 ORTHO05D011243 1.0e-48 198.0 184 51.6
CAN.G790.74 Capsicum annuum HOM05D009449 ORTHO05D011243 5.4e-42 175.6 186 47.3
Sopen12g020310 Solanum pennellii HOM05D009449 ORTHO05D011243 1.0e-40 171.4 120 69.2
PGSC0003DMG400047009 Solanum tuberosum HOM05D009449 ORTHO05D011243 4.3e-39 166.0 100 76.0
Sopen12g020450 Solanum pennellii HOM05D009449 ORTHO05D011243 6.9e-37 158.7 241 58.5
PGSC0003DMG400041716 Solanum tuberosum HOM05D009449 ORTHO05D011243 9.3e-34 148.3 100 69.0
CAN.G3147.1 Capsicum annuum HOM05D009449 ORTHO05D011243 3.9e-32 142.9 189 40.2
CAN.G941.40 Capsicum annuum HOM05D009449 ORTHO05D011243 3.9e-32 142.9 189 40.2
CAN.G941.41 Capsicum annuum HOM05D009449 ORTHO05D011243 3.9e-32 142.9 189 40.2
CAN.G941.38 Capsicum annuum HOM05D000541 ORTHO05D011243 1.1e-31 141.4 146 48.6
Sopen12g020440 Solanum pennellii HOM05D009449 ORTHO05D011243 8.2e-30 135.2 307 45.3
PGSC0003DMG400029062 Solanum tuberosum HOM05D009449 ORTHO05D011243 1.4e-29 134.4 263 50.2
Peaxi162Scf00038g02120 Petunia axillaris HOM05D009449 ORTHO05D011243 2.2e-27 127.1 165 43.0
Solyc12g040780.1 Solanum lycopersicum HOM05D009449 ORTHO05D011243 2.3e-24 117.1 147 46.9
PGSC0003DMG400043445 Solanum tuberosum HOM05D009449 ORTHO05D011243 9.7e-23 111.7 153 39.2
Solyc06g063080.1 Solanum lycopersicum HOM05D009449 ORTHO05D011243 1.6e-22 110.9 181 36.5
Sopen06g022530 Solanum pennellii HOM05D009449 ORTHO05D011243 2.2e-22 110.5 176 37.5
PGSC0003DMG400038160 Solanum tuberosum HOM05D009449 ORTHO05D011243 4.8e-22 109.4 174 36.2
PGSC0003DMG400038886 Solanum tuberosum HOM05D009449 ORTHO05D011243 5.1e-16 89.4 193 31.6
Sopen12g020330 Solanum pennellii HOM05D009449 ORTHO05D011243 8.8e-16 88.6 51 76.5
PGSC0003DMG400036778 Solanum tuberosum HOM05D009449 ORTHO05D011243 2.5e-15 87.0 51 72.5
Cc04_g00820 Coffea canephora HOM05D000327 ORTHO05D011243 3.3e-15 86.7 133 34.6
DCAR_016173 Daucus carota HOM05D000327 ORTHO05D011243 5.3e-13 79.3 137 35.0
PGSC0003DMG400040907 Solanum tuberosum HOM05D009449 ORTHO05D011243 1.7e-11 74.3 51 62.7
Rhsim08G0243700 Rhododendron simsii HOM05D000327 ORTHO05D011243 3.8e-11 73.2 127 33.1
Prupe.3G031900 Prunus persica HOM05D000327 ORTHO05D000218 5.0e-11 72.8 155 32.3
Lalb_Chr02g0144621 Lupinus albus HOM05D000327 ORTHO05D000218 1.4e-10 71.2 159 29.6
PGSC0003DMG400044849 Solanum tuberosum HOM05D009449 ORTHO05D011243 1.6e-09 67.8 181 30.9
Nn8g38526 Nelumbo nucifera HOM05D000327 ORTHO05D000218 2.1e-09 67.4 182 28.0
PSO455G0021 Papaver somniferum HOM05D000327 ORTHO05D000218 2.1e-09 67.4 132 34.8
arahy.Tifrunner.gnm1.ann1.DJ8HM4 Arachis hypogaea HOM05D000327 ORTHO05D000218 6.1e-09 65.9 186 28.0
Thecc.06G132300 Theobroma cacao HOM05D000327 ORTHO05D000218 6.1e-09 65.9 146 27.4
TWI63G1013 Tripterygium wilfordii HOM05D000327 ORTHO05D000218 7.9e-09 65.5 135 31.9
PSO170G4720 Papaver somniferum HOM05D000327 ORTHO05D000218 1.4e-08 64.7 132 34.1
Hma1.2p1_1208F.1_g267170 Hydrangea macrophylla HOM05D000327 ORTHO05D000218 1.8e-08 64.3 180 26.1
Nitab4.5_0004890g0030 Nicotiana tabacum HOM05D000327 ORTHO05D000218 1.8e-08 64.3 164 29.3
FAN26G1720 Fragaria x ananassa HOM05D000327 ORTHO05D000218 3.0e-08 63.5 135 31.9
TAR383G0224 Trochodendron aralioides HOM05D000327 ORTHO05D000218 3.0e-08 63.5 134 32.1
FvH4_1g09500 Fragaria vesca HOM05D000327 ORTHO05D000218 3.9e-08 63.2 120 34.2
FAN19G0157 Fragaria x ananassa HOM05D002094 ORTHO05D002113 3.9e-08 63.2 120 34.2
FAN26G0328 Fragaria x ananassa HOM05D000259 ORTHO05D000155 3.9e-08 63.2 120 34.2
FAN26G1366 Fragaria x ananassa HOM05D000259 ORTHO05D000155 3.9e-08 63.2 120 34.2
MBI19_g40831_MAGBIO Magnolia biondii HOM05D000327 ORTHO05D000218 3.9e-08 63.2 126 33.3
arahy.Tifrunner.gnm1.ann1.ZQY6UL Arachis hypogaea HOM05D000327 ORTHO05D000218 5.1e-08 62.8 137 30.7
Dinv25502 Davidia involucrata HOM05D000327 ORTHO05D000218 5.1e-08 62.8 143 32.2
FvH4_1g09510 Fragaria vesca HOM05D000327 ORTHO05D000218 6.7e-08 62.4 135 31.1
Eucgr.E03579 Eucalyptus grandis HOM05D000327 ORTHO05D000218 8.8e-08 62.0 183 26.8
FAN19G2624 Fragaria x ananassa HOM05D000327 ORTHO05D000218 1.1e-07 61.6 135 31.1
FAN26G2072 Fragaria x ananassa HOM05D000327 ORTHO05D000218 1.1e-07 61.6 135 31.1
Actinidia21827 Actinidia chinensis HOM05D000327 ORTHO05D011243 1.5e-07 61.2 95 34.7
Medtr2g044420 Medicago truncatula HOM05D000327 ORTHO05D000218 1.5e-07 61.2 144 31.9
RcHm_v2.0_Chr2g0096041 Rosa chinensis HOM05D000327 ORTHO05D000218 1.5e-07 61.2 198 27.3
TPR.G36737 Trifolium pratense HOM05D000327 ORTHO05D000218 2.6e-07 60.5 136 30.1
MD09G1173800 Malus domestica HOM05D000327 ORTHO05D000218 3.3e-07 60.1 134 30.6
TWI14G0739 Tripterygium wilfordii HOM05D000327 ORTHO05D000218 5.7e-07 59.3 126 32.5
arahy.Tifrunner.gnm1.ann1.K4MJKS Arachis hypogaea HOM05D000327 ORTHO05D000218 7.4e-07 58.9 172 26.2
Solyc06g068640.3 Solanum lycopersicum HOM05D000327 ORTHO05D000218 1.3e-06 58.2 137 31.4
Eucgr.E03590 Eucalyptus grandis HOM05D000327 ORTHO05D000218 2.2e-06 57.4 184 23.4
Zm00001eb177170 Zea mays HOM05D000327 ORTHO05D000218 2.2e-06 57.4 121 29.8
Nitab4.5_0007835g0020 Nicotiana tabacum HOM05D009449 ORTHO05D011243 2.8e-06 57.0 156 29.5
Eucgr.E03057 Eucalyptus grandis HOM05D000327 ORTHO05D000218 3.7e-06 56.6 184 23.4
Os08g0451800 Oryza sativa ssp. japonica HOM05D000327 ORTHO05D000218 3.7e-06 56.6 122 30.3
Atru.chr1.2754 Acer truncatum HOM05D000327 ORTHO05D000218 6.3e-06 55.8 167 25.1
CAN.G1089.4 Capsicum annuum HOM05D000327 ORTHO05D000218 6.3e-06 55.8 127 27.6
Duzib160G0693 Durio zibethinus HOM05D000327 ORTHO05D000218 6.3e-06 55.8 129 27.9
Eucgr.E03058 Eucalyptus grandis HOM05D000327 ORTHO05D000218 6.3e-06 55.8 161 26.7
Eucgr.E03591 Eucalyptus grandis HOM05D000327 ORTHO05D000218 6.3e-06 55.8 161 26.1
Medtr2g044290 Medicago truncatula HOM05D000327 ORTHO05D000218 6.3e-06 55.8 138 30.4


User provided reference genes

Program Settings