Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGSC0003DMG400032816 Solanum tuberosum HOM05D004354 ORTHO05D005409 0.0e+00 1171.4 566 100.0
Sopen07g027820 Solanum pennellii HOM05D004354 ORTHO05D005409 0.0e+00 1151.7 566 98.1
Solyc07g053850.3 Solanum lycopersicum HOM05D004354 ORTHO05D005409 0.0e+00 1148.7 566 97.9
Sopen12g001470 Solanum pennellii HOM05D004354 ORTHO05D005409 2.0e-298 1028.5 571 86.0
Solyc12g005470.2 Solanum lycopersicum HOM05D004354 ORTHO05D005409 1.3e-297 1025.8 571 86.0
Nitab4.5_0001184g0100 Nicotiana tabacum HOM05D004354 ORTHO05D005409 5.5e-293 1010.4 568 85.6
Cc05_g07440 Coffea canephora HOM05D004354 ORTHO05D005409 2.8e-292 1008.1 571 85.5
CSS0014582 Camellia sinensis var. sinensis HOM05D004354 ORTHO05D005409 6.1e-292 1006.9 566 85.3
Dinv04814 Davidia involucrata HOM05D004354 ORTHO05D005409 1.5e-290 1002.3 554 86.5
Dinv13394 Davidia involucrata HOM05D004354 ORTHO05D005409 8.3e-289 996.5 557 85.1
Rhsim06G0139400 Rhododendron simsii HOM05D004354 ORTHO05D005409 1.8e-288 995.3 552 85.1
Manes.13G144800 Manihot esculenta HOM05D004354 ORTHO05D005409 2.3e-286 988.4 568 83.6
QL08p039658 Quercus lobata HOM05D004354 ORTHO05D005409 6.6e-286 986.9 559 83.9
COL.COLO4_05947 Corchorus olitorius HOM05D004354 ORTHO05D005409 3.3e-285 984.6 558 83.3
Cfa014637 Carpinus fangiana HOM05D004354 ORTHO05D005409 5.6e-285 983.8 560 83.9
Hma1.2p1_0002F.1_g002080 Hydrangea macrophylla HOM05D004354 ORTHO05D005409 1.6e-284 982.2 562 84.5
Thecc.02G182400 Theobroma cacao HOM05D004354 ORTHO05D005409 3.6e-284 981.1 558 83.0
Gohir.A03G155600 Gossypium hirsutum HOM05D004354 ORTHO05D005409 4.7e-284 980.7 558 83.5
CSS0000262 Camellia sinensis var. sinensis HOM05D004354 ORTHO05D005409 4.0e-283 977.6 566 83.2
Ciclev10014745m.g Citrus clementina HOM05D004354 ORTHO05D005409 5.2e-283 977.2 564 82.4
Gorai.005G200400 Gossypium raimondii HOM05D004354 ORTHO05D005409 8.9e-283 976.5 558 83.2
Gohir.D02G178700 Gossypium hirsutum HOM05D004354 ORTHO05D005409 1.2e-282 976.1 558 83.2
CiPaw.03G179000 Carya illinoinensis HOM05D004354 ORTHO05D005409 5.8e-282 973.8 571 81.3
MSTRG.6802 Avicennia marina HOM05D004354 ORTHO05D005409 9.8e-282 973.0 568 82.4
Actinidia11091 Actinidia chinensis HOM05D004354 ORTHO05D005409 2.2e-281 971.8 524 87.8
Prupe.3G139300 Prunus persica HOM05D004354 ORTHO05D005409 2.7e-279 964.9 571 80.6
GSVIVG01020571001 Vitis vinifera HOM05D004354 ORTHO05D005409 1.0e-278 963.0 558 82.1
RcHm_v2.0_Chr2g0127681 Rosa chinensis HOM05D004354 ORTHO05D005409 2.5e-277 958.4 564 80.7
Potri.017G012600 Populus trichocarpa HOM05D004354 ORTHO05D005409 5.6e-277 957.2 559 81.2
FvH4_6g26490 Fragaria vesca HOM05D004354 ORTHO05D005409 7.3e-277 956.8 535 84.3
Potri.007G139300 Populus trichocarpa HOM05D004354 ORTHO05D005409 1.2e-276 956.1 549 82.3
Lj1A714G27 Lonicera japonica HOM05D004354 ORTHO05D005409 2.8e-276 954.9 557 82.2
TWI23G0225 Tripterygium wilfordii HOM05D004354 ORTHO05D005409 3.6e-276 954.5 554 81.9
FAN05G5576 Fragaria x ananassa HOM05D004354 ORTHO05D005409 8.0e-276 953.4 539 83.9
PGR142G0821 Punica granatum HOM05D004354 ORTHO05D005409 1.1e-275 953.0 546 82.8
MD09G1244500 Malus domestica HOM05D004354 ORTHO05D005409 6.8e-275 950.3 567 79.4
Lsat_1_v5_gn_4_66820 Lactuca sativa HOM05D004354 ORTHO05D005409 3.7e-273 944.5 551 82.0
FAN02G3736 Fragaria x ananassa HOM05D004354 ORTHO05D005409 8.3e-273 943.3 535 83.4
Peaxi162Scf01415g00030 Petunia axillaris HOM05D004354 ORTHO05D005409 8.3e-273 943.3 549 82.9
Eucgr.K01043 Eucalyptus grandis HOM05D004354 ORTHO05D005409 1.4e-272 942.6 555 80.0
MD17G1236500 Malus domestica HOM05D004354 ORTHO05D005409 2.4e-272 941.8 569 78.9
DCAR_009753 Daucus carota HOM05D004354 ORTHO05D005409 2.1e-271 938.7 535 83.2
Oeu036067.1 Olea europaea HOM05D004354 ORTHO05D005409 6.0e-271 937.2 555 79.8
Peaxi162Scf00008g00611 Petunia axillaris HOM05D004354 ORTHO05D005409 1.3e-270 936.0 571 79.5
vmacro12326 Vaccinium macrocarpon HOM05D004354 ORTHO05D005409 2.3e-270 935.3 535 82.4
VMungo1080G0203 Vigna mungo HOM05D004354 ORTHO05D005409 7.3e-269 930.2 535 80.9
Phvul.005G102100 Phaseolus vulgaris HOM05D004354 ORTHO05D005409 1.2e-268 929.5 558 78.3
Glyma.13G295600 Glycine max HOM05D004354 ORTHO05D005409 3.6e-268 927.9 558 78.5
Sc21g0003070 Simmondsia chinensis HOM05D004354 ORTHO05D005409 3.6e-268 927.9 535 82.1
MELO3C013588.2 Cucumis melo HOM05D004354 ORTHO05D005409 4.7e-268 927.5 556 79.5
CsaV3_6G015220 Cucumis sativus L. HOM05D004354 ORTHO05D005409 1.1e-267 926.4 536 81.5
CANSAT64G2319 Cannabis sativa HOM05D004354 ORTHO05D005409 1.4e-267 926.0 580 76.4
Glyma.12G205300 Glycine max HOM05D004354 ORTHO05D005409 1.8e-267 925.6 558 77.6
arahy.Tifrunner.gnm1.ann1.5TEV2E Arachis hypogaea HOM05D004354 ORTHO05D005409 3.1e-267 924.9 574 76.7
Medtr4g078525 Medicago truncatula HOM05D004354 ORTHO05D005409 5.2e-267 924.1 558 78.9
THA.LOC104804057 Tarenaya hassleriana HOM05D004354 ORTHO05D005409 2.6e-266 921.8 563 78.2
Sed0026522 Sechium edule HOM05D004354 ORTHO05D005409 3.4e-266 921.4 564 79.6
arahy.Tifrunner.gnm1.ann1.SG72Z3 Arachis hypogaea HOM05D004354 ORTHO05D005409 2.9e-265 918.3 590 74.6
Ca_18937_v3 Cicer arietinum L. HOM05D004354 ORTHO05D005409 3.7e-265 917.9 558 77.6
Aqoxy1G02375 Aquilegia oxysepala HOM05D004354 ORTHO05D005409 6.4e-265 917.1 550 79.5
Glyma.06G290800 Glycine max HOM05D004354 ORTHO05D005409 8.3e-265 916.8 558 77.8
TWI59G0686 Tripterygium wilfordii HOM05D004354 ORTHO05D005409 8.3e-265 916.8 564 78.5
Glyma.12G116100 Glycine max HOM05D004354 ORTHO05D005409 1.4e-264 916.0 554 78.2
Lj3g0017215 Lotus japonicus HOM05D004354 ORTHO05D005409 1.4e-264 916.0 562 77.4
Phvul.011G119730 Phaseolus vulgaris HOM05D004354 ORTHO05D005409 1.3e-262 909.4 561 77.4
Migut.M00279 Erythranthe guttata HOM05D004354 ORTHO05D005409 1.7e-262 909.1 549 77.8
HanXRQChr05g0143301 Helianthus annuus HOM05D004354 ORTHO05D005409 1.9e-261 905.6 551 78.6
AL3G53730 Arabidopsis lyrata HOM05D004354 ORTHO05D005409 2.5e-261 905.2 556 77.5
Lj3g0011593 Lotus japonicus HOM05D004354 ORTHO05D005409 2.5e-261 905.2 549 78.0
CARHR236110 Cardamine hirsuta HOM05D004354 ORTHO05D005409 5.6e-261 904.0 558 78.1
TPR.G2846 Trifolium pratense HOM05D004354 ORTHO05D005409 7.3e-261 903.7 564 76.6
EL10Ac9g20792 Beta vulgaris HOM05D004354 ORTHO05D005409 1.2e-260 902.9 517 82.8
PSO675G5152 Papaver somniferum HOM05D004354 ORTHO05D005409 1.6e-260 902.5 532 79.9
Thhalv10002192m.g Eutrema salsugineum HOM05D004354 ORTHO05D005409 2.8e-260 901.7 551 78.0
Nitab4.5_0000638g0120 Nicotiana tabacum HOM05D004354 ORTHO05D005409 2.8e-260 901.7 532 83.6
Lalb_Chr19g0135191 Lupinus albus HOM05D004354 ORTHO05D005409 1.1e-259 899.8 556 76.1
PSO541G1897 Papaver somniferum HOM05D004354 ORTHO05D005409 2.4e-259 898.7 532 79.7
Thhalv10024798m.g Eutrema salsugineum HOM05D004354 ORTHO05D005409 4.0e-259 897.9 550 77.8
Carub.0007s1237 Capsella rubella HOM05D004354 ORTHO05D005409 5.2e-259 897.5 564 75.5
Aa31LG8G17560 Aethionema arabicum HOM05D004354 ORTHO05D005409 6.8e-259 897.1 564 75.9
AT4G28370 Arabidopsis thaliana HOM05D004354 ORTHO05D005409 6.8e-259 897.1 550 77.3
AT2G20650 Arabidopsis thaliana HOM05D004354 ORTHO05D005409 8.9e-259 896.7 556 77.0
ECA234G2175 Erigeron canadensis HOM05D004354 ORTHO05D005409 1.5e-258 896.0 535 79.8
Psat7g168720 Pisum sativum HOM05D004354 ORTHO05D005409 5.8e-258 894.0 547 77.9
PGSC0003DMG400013734 Solanum tuberosum HOM05D004354 ORTHO05D005409 3.8e-257 891.3 555 79.5
TAR626G1453 Trochodendron aralioides HOM05D004354 ORTHO05D005409 1.1e-256 889.8 537 79.9
Aa31LG2G22230 Aethionema arabicum HOM05D004354 ORTHO05D005409 1.4e-256 889.4 553 77.6
Carub.0003s3517 Capsella rubella HOM05D004354 ORTHO05D005409 2.4e-256 888.6 557 76.5
Ca_09445_v3 Cicer arietinum L. HOM05D004354 ORTHO05D005409 4.2e-256 887.9 561 74.9
arahy.Tifrunner.gnm1.ann1.7S1AZB Arachis hypogaea HOM05D004354 ORTHO05D005409 5.4e-256 887.5 553 77.0
Cpa.g.sc83.63 Carica papaya HOM05D004354 ORTHO05D005409 5.4e-256 887.5 569 75.6
arahy.Tifrunner.gnm1.ann1.6AZK3P Arachis hypogaea HOM05D004354 ORTHO05D005409 2.7e-255 885.2 551 77.3
AL7G24220 Arabidopsis lyrata HOM05D004354 ORTHO05D005409 1.0e-254 883.2 550 76.0
Sp3g33900 Schrenkiella parvula HOM05D004354 ORTHO05D005409 3.0e-254 881.7 552 76.6
Lalb_Chr03g0029541 Lupinus albus HOM05D004354 ORTHO05D005409 7.3e-253 877.1 556 74.8
BraA08t33968Z Brassica rapa HOM05D004354 ORTHO05D005409 3.6e-252 874.8 553 75.9
Haze_13201 Corylus avellana HOM05D004354 ORTHO05D005409 3.6e-252 874.8 585 74.4
A08p20090 Brassica napus HOM05D004354 ORTHO05D005409 1.1e-251 873.2 553 75.9
BcaC07g38328 Brassica carinata HOM05D004354 ORTHO05D005409 2.4e-251 872.1 553 75.8
C08p10830 Brassica napus HOM05D004354 ORTHO05D005409 2.4e-251 872.1 553 75.8
BolC8t48758H Brassica oleracea HOM05D004354 ORTHO05D005409 4.0e-251 871.3 553 75.6
BcaB03g16858 Brassica carinata HOM05D004354 ORTHO05D005409 5.3e-251 870.9 538 76.6
BcaB03g12570 Brassica carinata HOM05D004354 ORTHO05D005409 1.2e-250 869.8 553 75.2
FAN14G3021 Fragaria x ananassa HOM05D004354 ORTHO05D005409 2.6e-250 868.6 511 81.6
MBI18_g19626_MAGBIO Magnolia biondii HOM05D004354 ORTHO05D005409 3.4e-250 868.2 550 76.5
Nitab4.5_0006194g0010 Nicotiana tabacum HOM05D004354 ORTHO05D005409 3.4e-250 868.2 568 75.5
BraA07t27805Z Brassica rapa HOM05D004354 ORTHO05D005409 6.4e-249 864.0 538 77.3
BcaC06g36756 Brassica carinata HOM05D004354 ORTHO05D005409 8.4e-249 863.6 537 76.7
BolC7t40478H Brassica oleracea HOM05D004354 ORTHO05D005409 8.4e-249 863.6 537 76.7
C07p00280 Brassica napus HOM05D004354 ORTHO05D005409 1.4e-248 862.8 538 77.0
Hund01030 Selenicereus undatus HOM05D004354 ORTHO05D005409 9.3e-248 860.1 572 73.6
Lalb_Chr01g0005151 Lupinus albus HOM05D004354 ORTHO05D005409 7.3e-245 850.5 556 73.6
FAN09G2589 Fragaria x ananassa HOM05D004354 ORTHO05D005409 3.6e-244 848.2 543 77.5
THA.LOC104824696 Tarenaya hassleriana HOM05D004354 ORTHO05D005409 2.4e-243 845.5 553 73.2
Sed0007610 Sechium edule HOM05D004354 ORTHO05D005409 9.0e-243 843.6 495 81.0
CARHR111300 Cardamine hirsuta HOM05D004354 ORTHO05D005409 3.4e-242 841.6 518 77.0
Nitab4.5_0001752g0070 Nicotiana tabacum HOM05D004354 ORTHO05D005409 1.1e-240 836.6 495 83.4
Nn1g06483 Nelumbo nucifera HOM05D004354 ORTHO05D005409 3.2e-240 835.1 528 77.5
A07p00120 Brassica napus HOM05D004354 ORTHO05D005409 1.6e-239 832.8 544 73.9
Sp7g26330 Schrenkiella parvula HOM05D004354 ORTHO05D005409 1.1e-235 820.1 549 73.0
ATR0763G074 Amborella trichopoda HOM05D004354 ORTHO05D005409 9.0e-235 817.0 517 74.9
ClCG02G017760 Citrullus lanatus HOM05D004354 ORTHO05D005409 5.1e-230 801.2 539 73.5
SGA_v2.0_scaffold70G23519 Striga asiatica HOM05D004354 ORTHO05D005409 6.7e-230 800.8 568 70.1
unitig_22.g5828 Utricularia gibba HOM05D004354 ORTHO05D005409 2.4e-219 765.8 559 67.8
Mapoly0093s0076 Marchantia polymorpha HOM05D004354 ORTHO05D005409 9.7e-197 690.6 543 64.1
SMO351G0175 Selaginella moellendorffii HOM05D004354 ORTHO05D005409 2.2e-196 689.5 562 62.3
Pp3c18_8870 Physcomitrium patens HOM05D004354 ORTHO05D005409 2.8e-196 689.1 590 59.2
Pp3c21_16510 Physcomitrium patens HOM05D004354 ORTHO05D005409 1.1e-195 687.2 548 61.9
Zm00001eb322160 Zea mays HOM05D004354 ORTHO05D005409 2.2e-193 679.5 416 79.3
Actinidia11016 Actinidia chinensis HOM05D004354 ORTHO05D005409 3.3e-152 542.7 316 83.2
CDE05G0895 Ceratophyllum demersum HOM05D004354 ORTHO05D005409 6.0e-138 495.4 278 82.4
TAR627G0070 Trochodendron aralioides HOM05D004354 ORTHO05D005409 1.8e-134 483.8 319 75.5
Atru.chr6.2897 Acer truncatum HOM05D004354 ORTHO05D005409 2.4e-131 473.4 263 86.3
AUR62033734 Chenopodium quinoa HOM05D004354 ORTHO05D005409 2.3e-129 466.8 348 67.8
CBR_g36920 Chara braunii HOM05D004354 ORTHO05D005409 1.2e-122 444.5 549 47.7
HPP92_012418 Vanilla planifolia HOM05D004354 ORTHO05D005409 3.1e-118 429.9 326 67.5
AUR62033735 Chenopodium quinoa HOM05D004354 ORTHO05D005409 4.3e-112 409.5 294 70.1
SEGI_11328 Sequoiadendron giganteum HOM05D004354 ORTHO05D005409 5.7e-104 382.5 217 76.0
SGA_v2.0_scaffold34G13945 Striga asiatica HOM05D004354 ORTHO05D005409 5.9e-101 372.5 295 65.1
AUR62038896 Chenopodium quinoa HOM05D004354 ORTHO05D005409 1.6e-98 364.4 217 81.1
Os07g0501900 Oryza sativa ssp. japonica HOM05D004354 ORTHO05D005409 1.6e-90 337.8 271 64.2
AUR62038895 Chenopodium quinoa HOM05D004354 ORTHO05D005409 1.7e-84 317.8 251 65.7
PRCOL_00005121 Prasinoderma coloniale HOM05D000722 ORTHO05D000590 9.7e-80 302.0 556 33.1
SGA_v2.0_scaffold4316G54468 Striga asiatica HOM05D004354 ORTHO05D005409 1.2e-77 295.0 198 72.2
CDE05G0163 Ceratophyllum demersum HOM05D004354 ORTHO05D005409 1.4e-73 281.6 200 69.0
SEGI_25482 Sequoiadendron giganteum HOM05D004354 ORTHO05D005409 4.4e-64 250.0 145 75.2
Cre08.g381900 Chlamydomonas reinhardtii HOM05D004354 ORTHO05D005409 2.0e-61 241.1 457 31.7
MCO03G390 Micromonas commoda HOM05D004354 ORTHO05D005409 5.9e-53 213.0 228 47.4
Atru.chr6.2898 Acer truncatum HOM05D004354 ORTHO05D005409 7.0e-46 189.5 136 69.1
CDE05G2312 Ceratophyllum demersum HOM05D004354 ORTHO05D005409 4.4e-32 143.7 128 53.1
LjContig00564g0000671 Lotus japonicus HOM05D000084 ORTHO05D000363 6.0e-29 133.3 111 62.2
SEGI_31944 Sequoiadendron giganteum HOM05D004354 ORTHO05D005409 2.3e-28 131.3 106 57.5
AUR62038894 Chenopodium quinoa HOM05D004354 ORTHO05D005409 6.6e-28 129.8 104 59.6
arahy.Tifrunner.gnm1.ann1.56HDLZ Arachis hypogaea HOM05D004354 ORTHO05D005409 1.5e-27 128.6 100 61.0
SGA_v2.0_scaffold70G23386 Striga asiatica HOM05D004354 ORTHO05D005409 1.5e-24 118.6 116 56.0
TPR.G10974 Trifolium pratense HOM05D004354 ORTHO05D005409 2.2e-23 114.8 170 41.8
TAR627G0937 Trochodendron aralioides HOM05D004354 ORTHO05D005409 1.1e-22 112.5 54 87.0
Nn1g04142 Nelumbo nucifera HOM05D004354 ORTHO05D005409 1.6e-18 98.6 56 80.4
Ciclev10013591m.g Citrus clementina HOM05D004354 ORTHO05D005409 1.6e-10 72.0 43 72.1
Potri.001G400600 Populus trichocarpa HOM05D004354 ORTHO05D001065 9.9e-08 62.8 63 39.7
PGSC0003DMG400000359 Solanum tuberosum HOM05D000634 ORTHO05D000517 2.2e-07 61.6 63 38.1
FvH4_6g11150 Fragaria vesca HOM05D009507 ORTHO05D022560 8.4e-07 59.7 77 29.9
FAN14G0535 Fragaria x ananassa HOM05D009507 ORTHO05D022560 8.4e-07 59.7 77 29.9
Glyma.14G107350 Glycine max HOM05D004354 ORTHO05D005409 1.1e-06 59.3 64 51.6
Cfa022079 Carpinus fangiana HOM05D004354 ORTHO05D124722 1.9e-06 58.5 70 34.3
FAN27G2732 Fragaria x ananassa HOM05D000082 ORTHO05D000038 2.4e-06 58.2 76 30.3
MBI11_g24782_MAGBIO Magnolia biondii HOM05D000341 ORTHO05D000557 2.4e-06 58.2 142 33.1
FAN08G0929 Fragaria x ananassa HOM05D007878 ORTHO05D010022 3.2e-06 57.8 60 40.0
Nn1g06293 Nelumbo nucifera HOM05D000086 ORTHO05D005495 3.2e-06 57.8 57 36.8
Ca_03846_v3 Cicer arietinum L. HOM05D000082 ORTHO05D008126 4.2e-06 57.4 78 32.1
FvH4_1g03410 Fragaria vesca HOM05D012452 ORTHO05D017950 4.2e-06 57.4 49 42.9
FAN19G1771 Fragaria x ananassa HOM05D012452 ORTHO05D017950 4.2e-06 57.4 49 42.9
Prupe.6G077000 Prunus persica HOM05D000086 ORTHO05D010990 4.2e-06 57.4 65 36.9
Solyc12g008480.3 Solanum lycopersicum HOM05D000082 ORTHO05D000038 4.2e-06 57.4 63 38.1
Os07g0631200 Oryza sativa ssp. japonica HOM05D000082 ORTHO05D000038 5.5e-06 57.0 57 42.1
TWI75G0506 Tripterygium wilfordii HOM05D000082 ORTHO05D000038 5.5e-06 57.0 102 32.4
FvH4_1g03372 Fragaria vesca HOM05D012452 ORTHO05D017950 7.1e-06 56.6 49 42.9
FAN23G2234 Fragaria x ananassa HOM05D012452 ORTHO05D017950 7.1e-06 56.6 49 42.9
FAN28G2875 Fragaria x ananassa HOM05D012452 ORTHO05D017950 7.1e-06 56.6 49 42.9
MBI15_g38537_MAGBIO Magnolia biondii HOM05D000341 ORTHO05D001197 7.1e-06 56.6 54 38.9
Zm00001eb146800 Zea mays HOM05D000440 ORTHO05D000295 7.1e-06 56.6 71 38.0
Ciclev10023831m.g Citrus clementina HOM05D000082 ORTHO05D000038 9.3e-06 56.2 75 33.3
MBI07_g28241_MAGBIO Magnolia biondii HOM05D000341 ORTHO05D001197 9.3e-06 56.2 54 38.9
unitig_748.g7202 Utricularia gibba HOM05D000086 ORTHO05D001065 9.3e-06 56.2 52 46.2
GSVIVG01030125001 Vitis vinifera HOM05D000341 ORTHO05D001197 9.3e-06 56.2 52 42.3


User provided reference genes

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