Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGSC0003DMG400026839 Solanum tuberosum HOM05D005962 ORTHO05D007325 1.5e-141 506.1 252 100.0
Solyc12g044640.2 Solanum lycopersicum HOM05D005962 ORTHO05D007325 3.2e-131 471.9 252 92.5
Sopen12g023060 Solanum pennellii HOM05D005962 ORTHO05D007325 1.2e-130 469.9 252 93.7
Nitab4.5_0002423g0030 Nicotiana tabacum HOM05D005962 ORTHO05D007325 2.1e-122 442.6 250 88.8
Nitab4.5_0001172g0180 Nicotiana tabacum HOM05D005962 ORTHO05D007325 7.8e-122 440.7 251 88.8
PGSC0003DMG401002516 Solanum tuberosum HOM05D005962 ORTHO05D007325 1.7e-116 422.9 252 84.1
Peaxi162Scf00038g01151 Petunia axillaris HOM05D005962 ORTHO05D007325 1.9e-112 409.5 252 81.0
Sopen03g040020 Solanum pennellii HOM05D005962 ORTHO05D007325 3.3e-112 408.7 252 81.7
TAR623G1297 Trochodendron aralioides HOM05D005962 ORTHO05D007325 3.1e-110 402.1 258 77.9
CAN.G1143.30 Capsicum annuum HOM05D005962 ORTHO05D007325 4.0e-110 401.7 230 85.7
Cc00_g23930 Coffea canephora HOM05D005962 ORTHO05D007325 9.9e-109 397.1 255 78.4
vmacro18833 Vaccinium macrocarpon HOM05D005962 ORTHO05D007325 1.7e-108 396.4 259 77.2
DCAR_007600 Daucus carota HOM05D005962 ORTHO05D007325 1.1e-107 393.7 253 75.9
Oeu024256.1 Olea europaea HOM05D005962 ORTHO05D007325 1.2e-106 390.2 259 76.8
Rhsim08G0229500 Rhododendron simsii HOM05D005962 ORTHO05D007325 1.6e-106 389.8 259 76.4
MBI01_g35895_MAGBIO Magnolia biondii HOM05D005962 ORTHO05D007325 3.5e-106 388.7 252 77.0
CiPaw.02G144100 Carya illinoinensis HOM05D005962 ORTHO05D007325 1.0e-105 387.1 245 78.8
Nn4g25123 Nelumbo nucifera HOM05D005962 ORTHO05D007325 1.7e-105 386.3 256 75.8
Haze_15888 Corylus avellana HOM05D005962 ORTHO05D007325 2.3e-105 386.0 240 80.8
Thecc.06G103400 Theobroma cacao HOM05D005962 ORTHO05D007325 3.0e-105 385.6 256 77.3
COL.COLO4_30547 Corchorus olitorius HOM05D005962 ORTHO05D007325 3.9e-105 385.2 257 75.9
CsaV3_3G023410 Cucumis sativus L. HOM05D005962 ORTHO05D007325 1.9e-104 382.9 253 77.9
Actinidia32123 Actinidia chinensis HOM05D005962 ORTHO05D007325 2.5e-104 382.5 246 76.0
Phvul.010G143300 Phaseolus vulgaris HOM05D005962 ORTHO05D007325 2.5e-104 382.5 254 76.0
QL08p056642 Quercus lobata HOM05D005962 ORTHO05D007325 7.3e-104 380.9 250 77.2
Rhsim08G0229700 Rhododendron simsii HOM05D005962 ORTHO05D007325 7.3e-104 380.9 272 72.8
ECA248G1573 Erigeron canadensis HOM05D005962 ORTHO05D007325 1.6e-103 379.8 247 76.5
arahy.Tifrunner.gnm1.ann1.FEFU12 Arachis hypogaea HOM05D005962 ORTHO05D007325 2.8e-103 379.0 255 74.5
Sed0025844 Sechium edule HOM05D005962 ORTHO05D007325 2.8e-103 379.0 254 77.6
Atru.chr12.732 Acer truncatum HOM05D005962 ORTHO05D007325 4.8e-103 378.3 249 75.9
VMungo0331G0822 Vigna mungo HOM05D005962 ORTHO05D007325 4.8e-103 378.3 257 75.1
Glyma.08G199200 Glycine max HOM05D005962 ORTHO05D007325 6.2e-103 377.9 254 75.6
Manes.04G136400 Manihot esculenta HOM05D005962 ORTHO05D007325 6.2e-103 377.9 247 77.7
ClCG07G013490 Citrullus lanatus HOM05D005962 ORTHO05D007325 1.1e-102 377.1 253 77.5
MSTRG.11013 Avicennia marina HOM05D005962 ORTHO05D007325 2.4e-102 375.9 259 73.7
Sabra17G0126400 Salix brachista HOM05D005962 ORTHO05D007325 5.3e-102 374.8 258 75.6
Manes.11G030300 Manihot esculenta HOM05D005962 ORTHO05D007325 6.9e-102 374.4 248 75.0
CANSAT21G1984 Cannabis sativa HOM05D005962 ORTHO05D007325 1.5e-101 373.2 248 75.0
Migut.I00971 Erythranthe guttata HOM05D005962 ORTHO05D007325 1.5e-101 373.2 257 75.1
Dinv37956 Davidia involucrata HOM05D005962 ORTHO05D007325 2.6e-101 372.5 225 82.2
Psat4g195960 Pisum sativum HOM05D005962 ORTHO05D007325 2.6e-101 372.5 248 76.2
Aqoxy2G04031 Aquilegia oxysepala HOM05D005962 ORTHO05D007325 3.4e-101 372.1 262 72.5
Lalb_Chr01g0013231 Lupinus albus HOM05D005962 ORTHO05D007325 3.4e-101 372.1 254 73.6
Gohir.A10G063800 Gossypium hirsutum HOM05D005962 ORTHO05D007325 4.5e-101 371.7 255 74.9
TWI12G1051 Tripterygium wilfordii HOM05D005962 ORTHO05D007325 4.5e-101 371.7 253 73.1
SalBow6G5073 Salvia bowleyana HOM05D005962 ORTHO05D007325 7.6e-101 370.9 252 73.8
Sc19g0007830 Simmondsia chinensis HOM05D005962 ORTHO05D007325 1.3e-100 370.2 257 73.2
Ciclev10026335m.g Citrus clementina HOM05D005962 ORTHO05D007325 1.7e-100 369.8 252 73.4
unitig_32.g10986 Utricularia gibba HOM05D005962 ORTHO05D007325 1.7e-100 369.8 261 73.6
Hma1.2p1_0764F.1_g214960 Hydrangea macrophylla HOM05D005962 ORTHO05D007325 2.9e-100 369.0 259 74.5
Lsat_1_v5_gn_5_181040 Lactuca sativa HOM05D005962 ORTHO05D007325 2.9e-100 369.0 247 76.5
Lj3g0005277 Lotus japonicus HOM05D005962 ORTHO05D007325 4.9e-100 368.2 245 76.3
Gohir.D01G215700 Gossypium hirsutum HOM05D005962 ORTHO05D007325 6.4e-100 367.9 247 75.7
MELO3C013015.2 Cucumis melo HOM05D005962 ORTHO05D007325 8.4e-100 367.5 277 70.8
Hma1.2p1_2308F.1_g319480 Hydrangea macrophylla HOM05D005962 ORTHO05D007325 8.4e-100 367.5 259 74.1
Medtr8g015230 Medicago truncatula HOM05D005962 ORTHO05D007325 1.1e-99 367.1 248 74.6
Gohir.D10G065400 Gossypium hirsutum HOM05D005962 ORTHO05D007325 1.4e-99 366.7 255 74.1
Prupe.3G054900 Prunus persica HOM05D005962 ORTHO05D007325 1.9e-99 366.3 255 74.5
CSS0027495 Camellia sinensis var. sinensis HOM05D005962 ORTHO05D007325 2.4e-99 365.9 227 79.3
Duzib192G0276 Durio zibethinus HOM05D005962 ORTHO05D007325 3.2e-99 365.5 254 74.4
Gorai.002G261900 Gossypium raimondii HOM05D005962 ORTHO05D007325 4.2e-99 365.2 247 75.3
GSVIVG01016927001 Vitis vinifera HOM05D005962 ORTHO05D007325 4.2e-99 365.2 225 80.4
PSO210G0258 Papaver somniferum HOM05D005962 ORTHO05D007325 7.1e-99 364.4 250 72.8
HPP92_007682 Vanilla planifolia HOM05D005962 ORTHO05D007325 1.2e-98 363.6 256 71.9
PSO210G7608 Papaver somniferum HOM05D005962 ORTHO05D007325 7.9e-98 360.9 250 71.6
Gorai.011G069400 Gossypium raimondii HOM05D005962 ORTHO05D007325 1.0e-97 360.5 228 79.4
arahy.Tifrunner.gnm1.ann1.M52QXX Arachis hypogaea HOM05D005962 ORTHO05D007325 1.3e-97 360.1 230 77.4
Eucgr.J02602 Eucalyptus grandis HOM05D005962 ORTHO05D007325 6.7e-97 357.8 250 71.6
EL10Ac3g07358 Beta vulgaris HOM05D005962 ORTHO05D007325 1.6e-95 353.2 255 69.8
Solyc03g121210.4 Solanum lycopersicum HOM05D005962 ORTHO05D007325 6.2e-95 351.3 236 75.8
AUR62020986 Chenopodium quinoa HOM05D005962 ORTHO05D007325 1.4e-94 350.1 255 69.0
Ca_23283_v3 Cicer arietinum L. HOM05D005962 ORTHO05D007325 2.6e-93 345.9 252 72.2
AUR62018448 Chenopodium quinoa HOM05D005962 ORTHO05D007325 5.8e-93 344.7 255 68.6
Os06g0217500 Oryza sativa ssp. japonica HOM05D005962 ORTHO05D007325 9.9e-93 344.0 249 69.9
PGR102G2175 Punica granatum HOM05D005962 ORTHO05D007325 2.2e-92 342.8 235 72.8
HanXRQChr15g0489361 Helianthus annuus HOM05D005962 ORTHO05D007325 5.5e-91 338.2 248 69.8
RcHm_v2.0_Chr2g0141751 Rosa chinensis HOM05D005962 ORTHO05D007325 1.6e-90 336.7 242 71.5
FvH4_6g32730 Fragaria vesca HOM05D005962 ORTHO05D007325 3.5e-90 335.5 242 71.5
Aa31LG8G8050 Aethionema arabicum HOM05D005962 ORTHO05D007325 6.0e-90 334.7 243 70.0
FAN05G1114 Fragaria x ananassa HOM05D005962 ORTHO05D007325 6.0e-90 334.7 242 71.1
FAN02G1749 Fragaria x ananassa HOM05D005962 ORTHO05D007325 1.0e-89 334.0 242 70.7
Zm00001eb372970 Zea mays HOM05D005962 ORTHO05D007325 2.3e-89 332.8 250 68.8
SGA_v2.0_scaffold45G16998 Striga asiatica HOM05D005962 ORTHO05D007325 3.9e-89 332.0 207 80.2
THA.LOC104805924 Tarenaya hassleriana HOM05D005962 ORTHO05D007325 1.9e-88 329.7 248 69.0
FAN09G1055 Fragaria x ananassa HOM05D005962 ORTHO05D007325 1.5e-85 320.1 242 68.2
Sp3g19410 Schrenkiella parvula HOM05D005962 ORTHO05D007325 2.0e-85 319.7 235 68.5
AL3G35400 Arabidopsis lyrata HOM05D005962 ORTHO05D007325 2.6e-85 319.3 245 67.3
SHI11207 Sapria himalayana HOM05D005962 ORTHO05D007325 1.7e-84 316.6 249 64.3
CARHR097270 Cardamine hirsuta HOM05D005962 ORTHO05D007325 3.8e-84 315.5 244 66.0
Carub.0003s2138 Capsella rubella HOM05D005962 ORTHO05D007325 1.1e-83 313.9 243 67.9
Thhalv10021373m.g Eutrema salsugineum HOM05D005962 ORTHO05D007325 1.9e-83 313.2 235 68.5
BcaB06g26231 Brassica carinata HOM05D005962 ORTHO05D007325 1.6e-82 310.1 248 64.9
Gohir.A01G226000 Gossypium hirsutum HOM05D005962 ORTHO05D007325 4.6e-82 308.5 195 77.9
BcaC05g28175 Brassica carinata HOM05D005962 ORTHO05D007325 3.0e-81 305.8 236 67.8
AT3G21350 Arabidopsis thaliana HOM05D005962 ORTHO05D007325 5.1e-81 305.1 243 67.5
C05p42110 Brassica napus HOM05D005962 ORTHO05D007325 5.1e-81 305.1 236 66.9
A05p27250 Brassica napus HOM05D005962 ORTHO05D007325 1.9e-80 303.1 236 66.9
BraA05t21615Z Brassica rapa HOM05D005962 ORTHO05D007325 4.8e-79 298.5 248 65.7
BolC5t32941H Brassica oleracea HOM05D005962 ORTHO05D007325 3.8e-76 288.9 273 58.2
Cpa.g.sc131.1 Carica papaya HOM05D005962 ORTHO05D007325 1.5e-72 276.9 161 82.0
ATR0705G221 Amborella trichopoda HOM05D005962 ORTHO05D007325 1.3e-71 273.9 172 79.1
Ah.04g150140 Amaranthus hybridus HOM05D005962 ORTHO05D007325 1.8e-70 270.0 165 78.8
TPR.G39766 Trifolium pratense HOM05D005962 ORTHO05D007325 4.5e-69 265.4 182 75.8
Migut.O00801 Erythranthe guttata HOM05D005962 ORTHO05D007325 5.9e-69 265.0 171 76.0
Migut.I00969 Erythranthe guttata HOM05D005962 ORTHO05D007325 8.5e-68 261.2 172 75.0
Cfa019373 Carpinus fangiana HOM05D005962 ORTHO05D007325 1.0e-65 254.2 171 77.2
Lj5A50T68 Lonicera japonica HOM05D005962 ORTHO05D007325 2.3e-65 253.1 169 76.9
Pp3c11_22580 Physcomitrium patens HOM05D005962 ORTHO05D007325 5.3e-62 241.9 243 54.3
Mapoly0012s0176 Marchantia polymorpha HOM05D005962 ORTHO05D007325 1.0e-60 237.7 246 53.7
AagrBONN_evm.TU.Sc2ySwM_362.1658 Anthoceros agrestis HOM05D005962 ORTHO05D007325 3.2e-59 232.6 216 57.4
MD14G1079700 Malus domestica HOM05D005962 ORTHO05D007325 1.1e-56 224.2 175 70.3
SMO143G0120 Selaginella moellendorffii HOM05D005962 ORTHO05D007325 2.6e-56 223.0 186 61.3
CBR_g22489 Chara braunii HOM05D005962 ORTHO05D007325 3.8e-44 182.6 254 46.1
Dinv30416 Davidia involucrata HOM05D005962 ORTHO05D007325 3.3e-35 152.9 215 43.7
Medtr0361s0030 Medicago truncatula HOM05D005962 ORTHO05D007325 5.5e-35 152.1 103 73.8
Lj5C50T14 Lonicera japonica HOM05D005962 ORTHO05D007325 2.1e-34 150.2 88 80.7
QL05p018100 Quercus lobata HOM05D005962 ORTHO05D007325 9.8e-32 141.4 93 78.5
Lj3g0016976 Lotus japonicus HOM05D005962 ORTHO05D007325 1.4e-30 137.5 192 47.9
SEGI_18792 Sequoiadendron giganteum HOM05D005962 ORTHO05D007325 1.3e-28 131.0 80 76.2
Lsat_1_v5_gn_2_99820 Lactuca sativa HOM05D005962 ORTHO05D007325 3.3e-27 126.3 88 71.6
Cfa019374 Carpinus fangiana HOM05D005962 ORTHO05D007325 1.8e-25 120.6 73 76.7
Nitab4.5_0008212g0010 Nicotiana tabacum HOM05D005962 ORTHO05D007325 2.2e-23 113.6 198 42.9
RcHm_v2.0_Chr5g0064381 Rosa chinensis HOM05D005962 ORTHO05D007325 1.0e-20 104.8 90 56.7
TAR623G1541 Trochodendron aralioides HOM05D005962 ORTHO05D007325 3.9e-20 102.8 58 84.5
Ah.04g150130 Amaranthus hybridus HOM05D000535 ORTHO05D000427 3.3e-19 99.8 91 59.3
TAR624G0741 Trochodendron aralioides HOM05D005962 ORTHO05D007325 4.7e-18 95.9 143 44.8
Zm00001eb084330 Zea mays HOM05D005962 ORTHO05D007325 6.8e-17 92.0 56 76.8
Zm00001eb192830 Zea mays HOM05D005962 ORTHO05D007325 4.4e-16 89.4 60 70.0
Pp3c7_2870 Physcomitrium patens HOM05D005962 ORTHO05D007325 2.4e-14 83.6 229 32.8
TAR636G3265 Trochodendron aralioides HOM05D005962 ORTHO05D007325 5.4e-14 82.4 61 67.2
BraA09t39590Z Brassica rapa HOM05D002393 ORTHO05D002845 8.9e-09 65.1 64 53.1
Cpa.g.c26718.1 Carica papaya HOM05D005962 ORTHO05D007325 9.9e-08 61.6 51 60.8
GSVIVG01016925001 Vitis vinifera HOM05D000106 ORTHO05D000160 2.9e-07 60.1 42 59.5
Dinv30417 Davidia involucrata HOM05D000106 ORTHO05D000160 1.1e-06 58.2 56 58.9


User provided reference genes

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