Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGSC0003DMG400024356 Solanum tuberosum HOM05D005307 ORTHO05D006695 0.0e+00 1193.3 901 100.0
Solyc09g092250.3 Solanum lycopersicum HOM05D005307 ORTHO05D006695 2.0e-281 972.6 853 91.9
Sopen09g035180 Solanum pennellii HOM05D005307 ORTHO05D006695 2.3e-280 969.1 854 91.9
Nitab4.5_0002223g0040 Nicotiana tabacum HOM05D005307 ORTHO05D006695 6.8e-261 904.4 697 83.6
Nitab4.5_0000697g0080 Nicotiana tabacum HOM05D005307 ORTHO05D006695 2.2e-259 899.4 698 83.8
CAN.G1155.22 Capsicum annuum HOM05D005307 ORTHO05D006695 2.1e-246 856.3 808 83.4
Peaxi162Scf00047g00141 Petunia axillaris HOM05D005307 ORTHO05D006695 3.4e-228 795.8 905 73.4
Actinidia35846 Actinidia chinensis HOM05D005307 ORTHO05D006695 9.0e-213 744.6 691 70.2
Haze_11645 Corylus avellana HOM05D005307 ORTHO05D006695 6.9e-205 718.4 672 70.4
Dinv38181 Davidia involucrata HOM05D005307 ORTHO05D006695 2.0e-204 716.8 700 70.1
CSS0004168 Camellia sinensis var. sinensis HOM05D005307 ORTHO05D006695 2.6e-199 699.9 625 72.8
HanXRQChr01g0022201 Helianthus annuus HOM05D005307 ORTHO05D006695 5.3e-197 692.2 689 68.4
Potri.017G058300 Populus trichocarpa HOM05D005307 ORTHO05D006695 8.5e-195 684.9 704 65.8
Sed0024269 Sechium edule HOM05D005307 ORTHO05D006695 1.9e-194 683.7 627 66.7
Sabra17G0051900 Salix brachista HOM05D005307 ORTHO05D006695 4.7e-193 679.1 715 66.4
CsaV3_3G010790 Cucumis sativus L. HOM05D005307 ORTHO05D006695 8.0e-193 678.3 687 64.8
MELO3C006297.2 Cucumis melo HOM05D005307 ORTHO05D006695 1.0e-192 677.9 680 64.6
Migut.G00755 Erythranthe guttata HOM05D005307 ORTHO05D006695 1.0e-192 677.9 695 67.3
DCAR_005485 Daucus carota HOM05D005307 ORTHO05D006695 1.8e-192 677.2 695 62.4
ECA248G0158 Erigeron canadensis HOM05D005307 ORTHO05D006695 1.8e-192 677.2 690 67.0
Manes.03G144900 Manihot esculenta HOM05D005307 ORTHO05D006695 8.8e-192 674.9 695 67.6
Prupe.1G163200 Prunus persica HOM05D005307 ORTHO05D006695 1.5e-191 674.1 630 67.8
Cfa014955 Carpinus fangiana HOM05D005307 ORTHO05D006695 2.0e-191 673.7 588 73.0
Sabra16G0201900 Salix brachista HOM05D005307 ORTHO05D006695 3.3e-191 672.9 701 63.5
MD04G1016500 Malus domestica HOM05D005307 ORTHO05D006695 1.7e-190 670.6 690 64.9
Atru.chr3.1814 Acer truncatum HOM05D005307 ORTHO05D006695 2.6e-188 663.3 710 63.8
QL06p026221 Quercus lobata HOM05D005307 ORTHO05D006695 5.9e-188 662.1 691 65.8
Lj3C779T0 Lonicera japonica HOM05D005307 ORTHO05D006695 1.0e-187 661.4 679 64.5
TAR636G0868 Trochodendron aralioides HOM05D005307 ORTHO05D006695 2.2e-187 660.2 670 68.7
MSTRG.4240 Avicennia marina HOM05D005307 ORTHO05D006695 2.9e-187 659.8 622 69.3
Ciclev10004448m.g Citrus clementina HOM05D005307 ORTHO05D006695 3.8e-187 659.4 683 65.6
SalBow8G0791 Salvia bowleyana HOM05D005307 ORTHO05D006695 8.5e-187 658.3 731 63.7
Cc03_g08380 Coffea canephora HOM05D005307 ORTHO05D006695 1.1e-186 657.9 640 66.9
Oeu002923.1 Olea europaea HOM05D005307 ORTHO05D006695 1.5e-186 657.5 691 64.3
Glyma.08G109600 Glycine max HOM05D005307 ORTHO05D006695 1.9e-186 657.1 682 63.9
RcHm_v2.0_Chr4g0413751 Rosa chinensis HOM05D005307 ORTHO05D006695 2.5e-186 656.8 696 65.5
Glyma.05G152900 Glycine max HOM05D005307 ORTHO05D006695 3.6e-185 652.9 695 63.2
Gohir.D10G137900 Gossypium hirsutum HOM05D005307 ORTHO05D006695 4.7e-185 652.5 639 66.5
Gorai.011G153100 Gossypium raimondii HOM05D005307 ORTHO05D006695 1.4e-184 651.0 639 66.4
Lsat_1_v5_gn_1_73301 Lactuca sativa HOM05D005307 ORTHO05D006695 3.0e-184 649.8 622 67.8
VMungo0251G3181 Vigna mungo HOM05D005307 ORTHO05D006695 6.8e-184 648.7 623 67.7
GSVIVG01001478001 Vitis vinifera HOM05D005307 ORTHO05D006695 4.4e-183 646.0 616 70.8
Ca_17978_v3 Cicer arietinum L. HOM05D005307 ORTHO05D006695 1.3e-182 644.4 606 69.1
Eucgr.H02691 Eucalyptus grandis HOM05D005307 ORTHO05D006695 2.0e-180 637.1 693 61.9
Gohir.A10G128100 Gossypium hirsutum HOM05D005307 ORTHO05D006695 5.9e-180 635.6 671 63.5
Lj4g0027601 Lotus japonicus HOM05D005307 ORTHO05D006695 7.7e-180 635.2 708 60.2
Lalb_Chr12g0205581 Lupinus albus HOM05D005307 ORTHO05D006695 7.7e-180 635.2 682 62.2
TPR.G11920 Trifolium pratense HOM05D005307 ORTHO05D006695 2.2e-179 633.6 683 62.7
COL.COLO4_20217 Corchorus olitorius HOM05D005307 ORTHO05D006695 6.5e-179 632.1 648 65.1
TAR365G0199 Trochodendron aralioides HOM05D005307 ORTHO05D006695 1.0e-176 624.8 666 64.4
Potri.001G319000 Populus trichocarpa HOM05D005307 ORTHO05D006695 1.4e-176 624.4 593 67.5
FvH4_4g13380 Fragaria vesca HOM05D005307 ORTHO05D006695 1.8e-176 624.0 691 64.4
FAN07G1190 Fragaria x ananassa HOM05D005307 ORTHO05D006695 1.8e-176 624.0 692 64.3
arahy.Tifrunner.gnm1.ann1.GBN5SF Arachis hypogaea HOM05D005307 ORTHO05D006695 2.3e-176 623.6 687 65.6
FAN17G0194 Fragaria x ananassa HOM05D005307 ORTHO05D006695 4.0e-176 622.9 691 64.4
Gorai.005G028400 Gossypium raimondii HOM05D005307 ORTHO05D006695 1.2e-175 621.3 709 64.7
FAN12G2903 Fragaria x ananassa HOM05D005307 ORTHO05D006695 1.5e-175 620.9 691 64.3
Psat7g074720 Pisum sativum HOM05D005307 ORTHO05D006695 1.5e-175 620.9 687 62.6
FAN22G0006 Fragaria x ananassa HOM05D005307 ORTHO05D006695 3.4e-175 619.8 625 68.8
Medtr8g081640 Medicago truncatula HOM05D005307 ORTHO05D006695 3.4e-175 619.8 638 65.4
Gohir.D02G023000 Gossypium hirsutum HOM05D005307 ORTHO05D006695 7.5e-175 618.6 707 64.9
Oeu043443.2 Olea europaea HOM05D005307 ORTHO05D006695 3.7e-174 616.3 627 66.3
arahy.Tifrunner.gnm1.ann1.C718TQ Arachis hypogaea HOM05D005307 ORTHO05D006695 1.4e-173 614.4 607 67.1
Thecc.04G196200 Theobroma cacao HOM05D005307 ORTHO05D006695 3.5e-172 609.8 685 66.3
SGA_v2.0_scaffold19G08778 Striga asiatica HOM05D005307 ORTHO05D006695 5.9e-172 609.0 688 61.6
vmacro00443 Vaccinium macrocarpon HOM05D005307 ORTHO05D006695 1.7e-171 607.4 624 67.1
Sc13g0000330 Simmondsia chinensis HOM05D005307 ORTHO05D006695 5.5e-170 602.4 700 58.3
Aqoxy2G03944 Aquilegia oxysepala HOM05D005307 ORTHO05D006695 2.8e-169 600.1 617 65.3
Sed0018547 Sechium edule HOM05D005307 ORTHO05D006695 3.6e-169 599.7 572 65.4
Gohir.A02G019700 Gossypium hirsutum HOM05D005307 ORTHO05D006695 8.0e-169 598.6 707 63.6
SHI06461 Sapria himalayana HOM05D005307 ORTHO05D006695 6.8e-168 595.5 630 58.4
EL10Ac3g07462 Beta vulgaris HOM05D005307 ORTHO05D006695 4.4e-167 592.8 642 58.6
Thhalv10002398m.g Eutrema salsugineum HOM05D005307 ORTHO05D006695 9.8e-167 591.7 582 62.2
THA.LOC104808701 Tarenaya hassleriana HOM05D005307 ORTHO05D006695 1.4e-165 587.8 676 62.3
ClCG05G003160 Citrullus lanatus HOM05D005307 ORTHO05D006695 2.0e-164 583.9 710 58.7
Eucgr.L00037 Eucalyptus grandis HOM05D005307 ORTHO05D006695 5.9e-164 582.4 693 58.2
Sp3g21580 Schrenkiella parvula HOM05D005307 ORTHO05D006695 1.0e-163 581.6 582 62.9
HPP92_024208 Vanilla planifolia HOM05D005307 ORTHO05D006695 2.3e-163 580.5 689 61.2
AUR62018565 Chenopodium quinoa HOM05D005307 ORTHO05D006695 2.5e-162 577.0 719 57.2
CDE05G3407 Ceratophyllum demersum HOM05D005307 ORTHO05D006695 4.7e-161 572.8 506 69.8
Phvul.003G050400 Phaseolus vulgaris HOM05D005307 ORTHO05D006695 1.5e-159 567.8 684 60.8
AUR62020854 Chenopodium quinoa HOM05D005307 ORTHO05D006695 9.8e-159 565.1 719 58.8
ATR0561G218 Amborella trichopoda HOM05D005307 ORTHO05D006695 1.9e-157 560.8 690 55.9
AL3G38890 Arabidopsis lyrata HOM05D005307 ORTHO05D006695 9.2e-157 558.5 621 60.5
CARHR099860 Cardamine hirsuta HOM05D005307 ORTHO05D006695 1.2e-156 558.1 627 59.0
AT3G23900 Arabidopsis thaliana HOM05D005307 ORTHO05D006695 3.5e-156 556.6 613 60.0
Nn1g08214 Nelumbo nucifera HOM05D005307 ORTHO05D006695 1.3e-155 554.7 692 61.3
PSO017G6801 Papaver somniferum HOM05D005307 ORTHO05D006695 1.6e-153 547.7 631 62.9
BraA07t28636Z Brassica rapa HOM05D005307 ORTHO05D006695 2.8e-153 547.0 502 62.0
PSO063G4654 Papaver somniferum HOM05D005307 ORTHO05D006695 3.6e-153 546.6 631 62.6
BcaB06g26551 Brassica carinata HOM05D005307 ORTHO05D006695 4.7e-153 546.2 621 56.0
A07p08510 Brassica napus HOM05D005307 ORTHO05D006695 4.7e-153 546.2 502 62.5
C07p13250 Brassica napus HOM05D005307 ORTHO05D006695 4.0e-152 543.1 502 61.8
BolC7t41817H Brassica oleracea HOM05D005307 ORTHO05D006695 4.0e-152 543.1 502 61.8
CDE05G2932 Ceratophyllum demersum HOM05D005307 ORTHO05D006695 5.2e-152 542.7 694 59.8
BcaC06g35584 Brassica carinata HOM05D005307 ORTHO05D006695 1.2e-151 541.6 502 61.6
Aa31LG8G10470 Aethionema arabicum HOM05D005307 ORTHO05D006695 5.8e-151 539.3 691 57.7
Carub.0003s2420 Capsella rubella HOM05D005307 ORTHO05D006695 2.4e-149 533.9 620 58.1
unitig_899.g14865 Utricularia gibba HOM05D005307 ORTHO05D006695 4.1e-149 533.1 513 63.4
Lalb_Chr07g0186791 Lupinus albus HOM05D005307 ORTHO05D006695 1.3e-142 511.5 681 55.9
CiPaw.01G117700 Carya illinoinensis HOM05D005307 ORTHO05D006695 4.9e-126 456.4 449 70.2
Os01g0101600 Oryza sativa ssp. japonica HOM05D005307 ORTHO05D006695 3.0e-115 420.6 603 54.6
Zm00001eb127130 Zea mays HOM05D005307 ORTHO05D006695 3.9e-115 420.2 509 56.0
Cpa.g.sc83.42 Carica papaya HOM05D005307 ORTHO05D006695 1.5e-114 418.3 505 64.0
Zm00001eb334080 Zea mays HOM05D005307 ORTHO05D006695 3.2e-109 400.6 624 50.0
SalBow8G0142 Salvia bowleyana HOM05D005307 ORTHO05D006695 5.3e-104 383.3 306 67.0
MBI07_g27653_MAGBIO Magnolia biondii HOM05D005307 ORTHO05D006695 1.3e-97 362.1 326 63.8
Mapoly0002s0028 Marchantia polymorpha HOM05D005307 ORTHO05D006695 2.5e-85 321.2 494 47.4
TAR625G1365 Trochodendron aralioides HOM05D005307 ORTHO05D006695 5.5e-85 320.1 213 75.6
SalBow8G1782 Salvia bowleyana HOM05D005307 ORTHO05D006695 7.0e-80 303.1 355 68.2
CBR_g48000 Chara braunii HOM05D005307 ORTHO05D006695 3.5e-79 300.8 541 41.8
Actinidia33177 Actinidia chinensis HOM05D005307 ORTHO05D006695 1.0e-78 299.3 369 61.5
Lj3A756G29 Lonicera japonica HOM05D005307 ORTHO05D006695 1.5e-74 285.4 339 63.1
Pp3c24_4280 Physcomitrium patens HOM05D005307 ORTHO05D006695 3.3e-74 284.3 485 46.0
Pp3c8_5960 Physcomitrium patens HOM05D005307 ORTHO05D006695 5.0e-70 270.4 609 45.3
C01p39750 Brassica napus HOM05D005307 ORTHO05D006695 9.4e-69 266.2 457 42.5
BolC1t03929H Brassica oleracea HOM05D005307 ORTHO05D006695 1.1e-64 252.7 294 55.8
Hund24403 Selenicereus undatus HOM05D005307 ORTHO05D006695 1.6e-63 248.8 187 67.9
A01p31200 Brassica napus HOM05D005307 ORTHO05D006695 1.7e-57 228.8 276 58.0
SEGI_03012 Sequoiadendron giganteum HOM05D005307 ORTHO05D006695 2.2e-57 228.4 292 48.3
Cpa.g.sc83.41 Carica papaya HOM05D005307 ORTHO05D006695 7.0e-56 223.4 188 67.6
arahy.Tifrunner.gnm1.ann1.K4I8TV Arachis hypogaea HOM05D005307 ORTHO05D006695 2.3e-54 218.4 201 61.2
BcaC03g15749 Brassica carinata HOM05D005307 ORTHO05D006695 1.8e-19 102.4 76 60.5
Actinidia33176 Actinidia chinensis HOM05D005307 ORTHO05D006695 4.0e-19 101.3 152 48.0
arahy.Tifrunner.gnm1.ann1.H01PAW Arachis hypogaea HOM05D005307 ORTHO05D006695 5.2e-19 100.9 58 77.6
BolC2t09503H Brassica oleracea HOM05D005307 ORTHO05D006695 8.9e-19 100.1 84 58.3
BraA02t07152Z Brassica rapa HOM05D005307 ORTHO05D006695 8.4e-17 93.6 104 54.8
MCO02G402 Micromonas commoda HOM05D005307 ORTHO05D006695 1.9e-16 92.4 343 29.4
BolC2t09502H Brassica oleracea HOM05D005307 ORTHO05D006695 4.2e-16 91.3 101 55.4
Lj3A756G30 Lonicera japonica HOM05D005307 ORTHO05D006695 1.2e-15 89.7 69 63.8
Lj3C756T3 Lonicera japonica HOM05D005307 ORTHO05D006695 2.7e-15 88.6 82 68.3
Cre16.g672150 Chlamydomonas reinhardtii HOM05D005307 ORTHO05D006695 6.0e-15 87.4 419 29.6
C02p34830 Brassica napus HOM05D005307 ORTHO05D006695 6.6e-14 84.0 104 51.9
Psat7g074680 Pisum sativum HOM05D005307 ORTHO05D006695 5.3e-11 74.3 261 31.4
BraA02t07151Z Brassica rapa HOM05D005307 ORTHO05D027550 1.2e-10 73.2 313 33.2
arahy.Tifrunner.gnm1.ann1.V8QUIX Arachis hypogaea HOM05D000659 ORTHO05D006695 5.8e-10 70.9 78 71.8
Lalb_Chr11g0067341 Lupinus albus HOM05D001023 ORTHO05D000912 6.0e-07 60.8 97 37.1
Phvul.009G046200 Phaseolus vulgaris HOM05D001023 ORTHO05D000912 7.9e-07 60.5 93 37.6
arahy.Tifrunner.gnm1.ann1.6LH71N Arachis hypogaea HOM05D005307 ORTHO05D006695 1.0e-06 60.1 141 53.2
arahy.Tifrunner.gnm1.ann1.6FDN0X Arachis hypogaea HOM05D001023 ORTHO05D000912 1.7e-06 59.3 103 36.9
arahy.Tifrunner.gnm1.ann1.8WSJ5E Arachis hypogaea HOM05D001023 ORTHO05D000912 1.7e-06 59.3 103 36.9
Glyma.06G135300 Glycine max HOM05D001023 ORTHO05D000912 1.7e-06 59.3 93 36.6
Gohir.A01G041600 Gossypium hirsutum HOM05D001023 ORTHO05D000912 1.7e-06 59.3 91 36.3
Gorai.002G038400 Gossypium raimondii HOM05D001023 ORTHO05D000912 1.7e-06 59.3 91 36.3
Medtr3g092510 Medicago truncatula HOM05D001023 ORTHO05D000912 1.7e-06 59.3 93 35.5
Phvul.009G046100 Phaseolus vulgaris HOM05D001023 ORTHO05D000912 1.7e-06 59.3 93 36.6
Glyma.04G229400 Glycine max HOM05D001023 ORTHO05D000912 2.3e-06 58.9 93 35.5
Lalb_Chr08g0239731 Lupinus albus HOM05D001023 ORTHO05D000912 2.3e-06 58.9 93 36.6
Lalb_Chr23g0271881 Lupinus albus HOM05D001023 ORTHO05D000912 2.3e-06 58.9 102 37.3
Ca_16768_v3 Cicer arietinum L. HOM05D001023 ORTHO05D000912 3.9e-06 58.2 93 35.5
Gohir.A04G047000 Gossypium hirsutum HOM05D001023 ORTHO05D000912 3.9e-06 58.2 91 34.1
Gohir.D05G333200 Gossypium hirsutum HOM05D001023 ORTHO05D000912 3.9e-06 58.2 91 34.1
Gorai.009G358300 Gossypium raimondii HOM05D001023 ORTHO05D000912 3.9e-06 58.2 91 34.1
Lalb_Chr23g0271891 Lupinus albus HOM05D001023 ORTHO05D000912 3.9e-06 58.2 90 37.8
VMungo1309G1740 Vigna mungo HOM05D001023 ORTHO05D000912 3.9e-06 58.2 93 35.5
Ah.04g163800 Amaranthus hybridus HOM05D001023 ORTHO05D000912 5.1e-06 57.8 91 37.4
arahy.Tifrunner.gnm1.ann1.863Y68 Arachis hypogaea HOM05D001023 ORTHO05D000912 5.1e-06 57.8 104 32.7
arahy.Tifrunner.gnm1.ann1.LLV436 Arachis hypogaea HOM05D001023 ORTHO05D000912 5.1e-06 57.8 104 32.7
EL10Ac4g08496 Beta vulgaris HOM05D001023 ORTHO05D000912 5.1e-06 57.8 91 35.2
BraA01t03245Z Brassica rapa HOM05D005307 ORTHO05D006695 5.1e-06 57.8 43 69.8
Carub.0001s4292 Capsella rubella HOM05D001023 ORTHO05D000912 5.1e-06 57.8 93 35.5
Gohir.A11G291200 Gossypium hirsutum HOM05D001023 ORTHO05D000912 6.6e-06 57.4 91 35.2
Gohir.D11G301400 Gossypium hirsutum HOM05D001023 ORTHO05D000912 6.6e-06 57.4 91 35.2
Gorai.007G335300 Gossypium raimondii HOM05D001023 ORTHO05D000912 6.6e-06 57.4 91 35.2
RcHm_v2.0_Chr7g0210041 Rosa chinensis HOM05D000142 ORTHO05D003173 6.6e-06 57.4 98 37.8
Sc03g0007750 Simmondsia chinensis HOM05D001023 ORTHO05D000912 6.6e-06 57.4 95 34.7
Ah.04g163810 Amaranthus hybridus HOM05D001023 ORTHO05D000912 8.7e-06 57.0 91 36.3
Cfa019452 Carpinus fangiana HOM05D001023 ORTHO05D000912 8.7e-06 57.0 104 34.6
AUR62043090 Chenopodium quinoa HOM05D001023 ORTHO05D000912 8.7e-06 57.0 91 35.2
Glyma.06G135200 Glycine max HOM05D001023 ORTHO05D000912 8.7e-06 57.0 93 36.6
Lalb_Chr19g0133581 Lupinus albus HOM05D001023 ORTHO05D000912 8.7e-06 57.0 91 36.3
Psat5g072840 Pisum sativum HOM05D001023 ORTHO05D000912 8.7e-06 57.0 93 34.4


User provided reference genes

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