Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGSC0003DMG400022861 Solanum tuberosum HOM05D002653 ORTHO05D002623 2.7e-28 127.9 61 100.0
Solyc11g045160.3 Solanum lycopersicum HOM05D002653 ORTHO05D002623 7.4e-18 93.2 43 100.0
Peaxi162Scf00126g00051 Petunia axillaris HOM05D002653 ORTHO05D002623 3.7e-17 90.9 43 95.3
Sopen11g020620 Solanum pennellii HOM05D002653 ORTHO05D002623 3.7e-17 90.9 43 97.7
Nitab4.5_0004202g0020 Nicotiana tabacum HOM05D002653 ORTHO05D002623 3.1e-16 87.8 43 90.7
DCAR_018920 Daucus carota HOM05D002653 ORTHO05D002623 1.2e-15 85.9 43 86.0
CAN.G690.1 Capsicum annuum HOM05D002653 ORTHO05D002623 2.0e-15 85.1 43 88.4
Cc11_g00290 Coffea canephora HOM05D002653 ORTHO05D007806 7.7e-15 83.2 43 86.0
Oeu013190.1 Olea europaea HOM05D002653 ORTHO05D002623 1.0e-14 82.8 42 88.1
Manes.11G165700 Manihot esculenta HOM05D002653 ORTHO05D002623 3.8e-14 80.9 41 87.8
Dinv38369 Davidia involucrata HOM05D002653 ORTHO05D002623 5.0e-14 80.5 41 85.4
Rhsim13G0127300 Rhododendron simsii HOM05D002653 ORTHO05D002623 1.4e-13 79.0 41 82.9
Cpa.g.c28352.2 Carica papaya HOM05D002653 ORTHO05D002623 1.9e-13 78.6 41 85.4
Migut.L00787 Erythranthe guttata HOM05D002653 ORTHO05D002623 1.9e-13 78.6 43 79.1
Migut.L00840 Erythranthe guttata HOM05D002653 ORTHO05D002623 1.9e-13 78.6 43 79.1
ECA233G1976 Erigeron canadensis HOM05D002653 ORTHO05D002623 3.2e-13 77.8 43 74.4
Lsat_1_v5_gn_6_56501 Lactuca sativa HOM05D002653 ORTHO05D002623 3.2e-13 77.8 43 76.7
Lsat_1_v5_gn_8_5081 Lactuca sativa HOM05D002653 ORTHO05D002623 3.2e-13 77.8 43 76.7
CSS0026519 Camellia sinensis var. sinensis HOM05D002653 ORTHO05D002623 4.2e-13 77.4 41 82.9
CSS0038262 Camellia sinensis var. sinensis HOM05D002653 ORTHO05D002623 4.2e-13 77.4 41 82.9
TWI34G1636 Tripterygium wilfordii HOM05D002653 ORTHO05D002623 4.2e-13 77.4 55 69.1
Cfa016258 Carpinus fangiana HOM05D002653 ORTHO05D002623 9.4e-13 76.3 41 78.0
Ciclev10013321m.g Citrus clementina HOM05D002653 ORTHO05D002623 9.4e-13 76.3 41 82.9
MSTRG.8096 Avicennia marina HOM05D002653 ORTHO05D002623 1.2e-12 75.9 42 81.0
Carub.0006s2259 Capsella rubella HOM05D002653 ORTHO05D002623 1.2e-12 75.9 55 69.1
vmacro03485 Vaccinium macrocarpon HOM05D002653 ORTHO05D002623 1.2e-12 75.9 41 80.5
Atru.chr8.1040 Acer truncatum HOM05D002653 ORTHO05D002623 1.6e-12 75.5 41 82.9
Aa31LG11G3960 Aethionema arabicum HOM05D002653 ORTHO05D002623 1.6e-12 75.5 41 78.0
CDE12G0934 Ceratophyllum demersum HOM05D002653 ORTHO05D002623 1.6e-12 75.5 54 68.5
PGR044G0026 Punica granatum HOM05D002653 ORTHO05D002623 1.6e-12 75.5 40 80.0
Sed0003631 Sechium edule HOM05D002653 ORTHO05D002623 1.6e-12 75.5 41 82.9
ClCG03G010410 Citrullus lanatus HOM05D002653 ORTHO05D002623 2.1e-12 75.1 41 82.9
THA.LOC104814962 Tarenaya hassleriana HOM05D002653 ORTHO05D002623 2.1e-12 75.1 41 78.0
C07p42990 Brassica napus HOM05D002653 ORTHO05D002623 2.7e-12 74.7 55 63.6
CANSAT01G2419 Cannabis sativa HOM05D002653 ORTHO05D002623 2.7e-12 74.7 41 75.6
MELO3C010033.2 Cucumis melo HOM05D002653 ORTHO05D002623 2.7e-12 74.7 41 82.9
CsaV3_1G044330 Cucumis sativus L. HOM05D002653 ORTHO05D002623 2.7e-12 74.7 41 82.9
Manes.09G076300 Manihot esculenta HOM05D002653 ORTHO05D002623 2.7e-12 74.7 41 80.5
Sabra16G0308200 Salix brachista HOM05D002653 ORTHO05D002623 2.7e-12 74.7 41 80.5
A06p35550 Brassica napus HOM05D002653 ORTHO05D002623 3.6e-12 74.3 44 72.7
Psat0s3513g0080 Pisum sativum HOM05D002653 ORTHO05D002623 3.6e-12 74.3 56 71.4
Potri.001G455600 Populus trichocarpa HOM05D002653 ORTHO05D002623 3.6e-12 74.3 41 80.5
Prupe.3G028500 Prunus persica HOM05D002653 ORTHO05D002623 3.6e-12 74.3 41 78.0
TAR624G0800 Trochodendron aralioides HOM05D002653 ORTHO05D002623 3.6e-12 74.3 41 78.0
Ca_14758_v3 Cicer arietinum L. HOM05D002653 ORTHO05D002623 4.6e-12 73.9 48 75.0
SalBow1G2769 Salvia bowleyana HOM05D002653 ORTHO05D002623 4.6e-12 73.9 43 76.7
Hma1.2p1_1074F.1_g254370 Hydrangea macrophylla HOM05D002653 ORTHO05D002623 6.1e-12 73.6 41 80.5
Hma1.2p1_1074F.1_g254376 Hydrangea macrophylla HOM05D002653 ORTHO05D002623 6.1e-12 73.6 41 80.5
Lj4g0020533 Lotus japonicus HOM05D002653 ORTHO05D002623 6.1e-12 73.6 56 69.6
LjContig00141g0016117 Lotus japonicus HOM05D002653 ORTHO05D002623 6.1e-12 73.6 56 69.6
MD17G1156800 Malus domestica HOM05D002653 ORTHO05D002623 6.1e-12 73.6 41 75.6
Medtr2g007250 Medicago truncatula HOM05D002653 ORTHO05D002623 6.1e-12 73.6 56 69.6
arahy.Tifrunner.gnm1.ann1.GW217K Arachis hypogaea HOM05D002653 ORTHO05D002623 7.9e-12 73.2 56 69.6
Thhalv10003500m.g Eutrema salsugineum HOM05D002653 ORTHO05D002623 7.9e-12 73.2 41 78.0
Glyma.13G174600 Glycine max HOM05D002653 ORTHO05D002623 7.9e-12 73.2 55 70.9
AUR62013467 Chenopodium quinoa HOM05D002653 ORTHO05D002623 1.0e-11 72.8 59 59.3
Lj4A824T16 Lonicera japonica HOM05D002653 ORTHO05D002623 1.0e-11 72.8 34 91.2
SGA_v2.0_scaffold131G34416 Striga asiatica HOM05D002653 ORTHO05D002623 1.0e-11 72.8 41 78.0
BcaNung01253 Brassica carinata HOM05D002653 ORTHO05D002623 1.4e-11 72.4 41 75.6
BolC7t44828H Brassica oleracea HOM05D002653 ORTHO05D002623 1.4e-11 72.4 41 75.6
HanXRQChr07g0186761 Helianthus annuus HOM05D002653 ORTHO05D002623 1.4e-11 72.4 36 86.1
Phvul.002G234304 Phaseolus vulgaris HOM05D002653 ORTHO05D002623 1.4e-11 72.4 55 70.9
Phvul.002G234312 Phaseolus vulgaris HOM05D002653 ORTHO05D002623 1.4e-11 72.4 55 70.9
SalBow1G3632 Salvia bowleyana HOM05D002653 ORTHO05D002623 1.4e-11 72.4 43 74.4
AL6G36330 Arabidopsis lyrata HOM05D002653 ORTHO05D002623 1.8e-11 72.0 41 78.0
AT5G24740 Arabidopsis thaliana HOM05D002653 ORTHO05D002623 1.8e-11 72.0 41 78.0
GSVIVG01019366001 Vitis vinifera HOM05D002653 ORTHO05D002623 1.8e-11 72.0 41 75.6
CiPaw.06G000500 Carya illinoinensis HOM05D002653 ORTHO05D002623 2.3e-11 71.6 41 73.2
Lalb_Chr01g0009381 Lupinus albus HOM05D002653 ORTHO05D002623 2.3e-11 71.6 48 68.8
QL04p064992 Quercus lobata HOM05D002653 ORTHO05D002623 2.3e-11 71.6 41 75.6
BraA06t26480Z Brassica rapa HOM05D002653 ORTHO05D002623 3.0e-11 71.2 42 71.4
Thecc.01G150000 Theobroma cacao HOM05D002653 ORTHO05D002623 3.0e-11 71.2 42 76.2
unitig_8.g3108 Utricularia gibba HOM05D002653 ORTHO05D002623 3.0e-11 71.2 48 66.7
Duzib114G0204 Durio zibethinus HOM05D002653 ORTHO05D002623 3.9e-11 70.9 42 73.8
VMungo0251G1383 Vigna mungo HOM05D002653 ORTHO05D002623 3.9e-11 70.9 55 69.1
EL10Ac1g01415 Beta vulgaris HOM05D002653 ORTHO05D002623 5.1e-11 70.5 41 73.2
Gohir.A05G394600 Gossypium hirsutum HOM05D002653 ORTHO05D002623 5.1e-11 70.5 41 78.0
Gohir.D04G020301 Gossypium hirsutum HOM05D002653 ORTHO05D002623 5.1e-11 70.5 41 78.0
Gorai.012G024100 Gossypium raimondii HOM05D002653 ORTHO05D002623 5.1e-11 70.5 41 78.0
AUR62026805 Chenopodium quinoa HOM05D002653 ORTHO05D002623 1.1e-10 69.3 59 59.3
Sc15g0007450 Simmondsia chinensis HOM05D002653 ORTHO05D002623 1.1e-10 69.3 41 73.2
SEGI_23454 Sequoiadendron giganteum HOM05D002653 ORTHO05D002623 1.5e-10 68.9 41 73.2
Ah.05g169290 Amaranthus hybridus HOM05D002653 ORTHO05D002623 2.6e-10 68.2 40 75.0
Psat6g120600 Pisum sativum HOM05D001580 ORTHO05D002623 2.6e-10 68.2 56 66.1
arahy.Tifrunner.gnm1.ann1.8RHS4X Arachis hypogaea HOM05D002653 ORTHO05D002623 3.3e-10 67.8 39 82.1
Nn7g37406 Nelumbo nucifera HOM05D002653 ORTHO05D002623 3.3e-10 67.8 41 73.2
HPP92_001360 Vanilla planifolia HOM05D002653 ORTHO05D002623 5.7e-10 67.0 41 70.7
TPR.G8155 Trifolium pratense HOM05D002653 ORTHO05D002623 9.7e-10 66.2 33 90.9
ATR1155G033 Amborella trichopoda HOM05D002653 ORTHO05D002623 1.3e-09 65.9 41 70.7
Aqoxy2G01525 Aquilegia oxysepala HOM05D002653 ORTHO05D002623 1.8e-08 62.0 40 67.5
RcHm_v2.0_Chr2g0148311 Rosa chinensis HOM05D002653 ORTHO05D002623 4.5e-07 57.4 39 69.2
FAN02G0462 Fragaria x ananassa HOM05D002653 ORTHO05D002623 2.2e-06 55.1 32 71.9
FvH4_6g36300 Fragaria vesca HOM05D002653 ORTHO05D002623 6.5e-06 53.5 32 68.8
FAN09G4442 Fragaria x ananassa HOM05D002653 ORTHO05D002623 6.5e-06 53.5 32 68.8
FAN14G0870 Fragaria x ananassa HOM05D002653 ORTHO05D002623 6.5e-06 53.5 32 68.8
FAN14G5588 Fragaria x ananassa HOM05D002653 ORTHO05D002623 6.5e-06 53.5 32 68.8
Os08g0116700 Oryza sativa ssp. japonica HOM05D002653 ORTHO05D002623 6.5e-06 53.5 41 58.5
PSO063G3289 Papaver somniferum HOM05D002653 ORTHO05D002623 8.5e-06 53.1 32 65.6


User provided reference genes

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