Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGSC0003DMG400022705 Solanum tuberosum HOM05D005180 ORTHO05D006136 3.7e-121 438.3 243 100.0
Solyc01g008990.4 Solanum lycopersicum HOM05D005180 ORTHO05D006136 1.6e-116 422.9 242 96.3
Sopen01g004480 Solanum pennellii HOM05D005180 ORTHO05D006136 4.4e-114 414.8 243 95.1
CAN.G714.6 Capsicum annuum HOM05D005180 ORTHO05D006136 1.5e-109 399.8 243 91.8
Nitab4.5_0000428g0030 Nicotiana tabacum HOM05D005180 ORTHO05D006136 1.4e-107 393.3 243 86.4
Nitab4.5_0002915g0060 Nicotiana tabacum HOM05D005180 ORTHO05D006136 1.8e-107 392.9 243 89.7
Peaxi162Scf00050g01910 Petunia axillaris HOM05D005180 ORTHO05D006136 2.6e-106 389.0 243 88.5
Sopen11g029830 Solanum pennellii HOM05D005180 ORTHO05D006136 4.6e-103 378.3 243 86.0
Nitab4.5_0002161g0010 Nicotiana tabacum HOM05D005180 ORTHO05D006136 1.1e-101 373.6 243 85.6
CAN.G1085.4 Capsicum annuum HOM05D005180 ORTHO05D006136 3.6e-100 368.6 243 83.5
Nitab4.5_0002567g0080 Nicotiana tabacum HOM05D005180 ORTHO05D006136 4.7e-100 368.2 243 83.5
PGSC0003DMG400027389 Solanum tuberosum HOM05D005180 ORTHO05D006136 1.1e-99 367.1 242 84.3
vmacro07270 Vaccinium macrocarpon HOM05D005180 ORTHO05D006136 6.9e-99 364.4 243 79.4
Cc01_g07100 Coffea canephora HOM05D005180 ORTHO05D006136 1.0e-94 350.5 243 81.5
Ciclev10021949m.g Citrus clementina HOM05D005180 ORTHO05D006136 1.3e-94 350.1 243 78.2
Hma1.2p1_1711F.1_g298680 Hydrangea macrophylla HOM05D005180 ORTHO05D006136 1.7e-94 349.7 205 87.8
Actinidia07010 Actinidia chinensis HOM05D005180 ORTHO05D006136 3.9e-94 348.6 243 80.7
HanXRQChr01g0020751 Helianthus annuus HOM05D005180 ORTHO05D006136 2.5e-93 345.9 245 75.1
Rhsim04G0005300 Rhododendron simsii HOM05D005180 ORTHO05D006136 4.3e-93 345.1 206 85.4
GSVIVG01037378001 Vitis vinifera HOM05D005180 ORTHO05D006136 4.3e-93 345.1 243 79.4
CSS0011166 Camellia sinensis var. sinensis HOM05D005180 ORTHO05D006136 9.6e-93 344.0 243 79.4
MSTRG.18479 Avicennia marina HOM05D005180 ORTHO05D006136 1.3e-92 343.6 242 79.8
Rhsim13G0203300 Rhododendron simsii HOM05D005180 ORTHO05D006136 1.3e-92 343.6 243 79.4
MD10G1023900 Malus domestica HOM05D005180 ORTHO05D006136 2.1e-92 342.8 243 74.1
Dinv35897 Davidia involucrata HOM05D005180 ORTHO05D006136 2.8e-92 342.4 227 84.6
Prupe.8G027400 Prunus persica HOM05D005180 ORTHO05D006136 2.8e-92 342.4 243 74.1
Gorai.003G054000 Gossypium raimondii HOM05D005180 ORTHO05D006136 6.2e-92 341.3 243 78.6
SGA_v2.0_scaffold29G12131 Striga asiatica HOM05D005180 ORTHO05D006136 6.2e-92 341.3 244 79.1
Potri.013G080200 Populus trichocarpa HOM05D005180 ORTHO05D006136 8.1e-92 340.9 242 74.0
ClCG09G016930 Citrullus lanatus HOM05D005180 ORTHO05D006136 1.1e-91 340.5 243 78.2
Gohir.D03G052000 Gossypium hirsutum HOM05D005180 ORTHO05D006136 1.4e-91 340.1 243 78.6
Lalb_Chr20g0121321 Lupinus albus HOM05D005180 ORTHO05D006136 3.1e-91 339.0 244 72.1
RcHm_v2.0_Chr6g0275831 Rosa chinensis HOM05D005180 ORTHO05D006136 4.0e-91 338.6 243 72.0
Sed0003176 Sechium edule HOM05D005180 ORTHO05D006136 5.3e-91 338.2 240 73.8
CsaV3_2G036420 Cucumis sativus L. HOM05D005180 ORTHO05D006136 1.5e-90 336.7 243 73.3
Haze_00396 Corylus avellana HOM05D005180 ORTHO05D006136 2.0e-90 336.3 243 77.8
Sabra13G0072900 Salix brachista HOM05D005180 ORTHO05D006136 2.0e-90 336.3 238 74.4
CiPaw.06G034400 Carya illinoinensis HOM05D005180 ORTHO05D006136 2.6e-90 335.9 243 77.4
SalBow6G2568 Salvia bowleyana HOM05D005180 ORTHO05D006136 2.6e-90 335.9 242 78.5
Eucgr.D02531 Eucalyptus grandis HOM05D005180 ORTHO05D006136 3.4e-90 335.5 209 80.9
FAN27G2246 Fragaria x ananassa HOM05D005180 ORTHO05D006136 3.4e-90 335.5 244 72.1
MELO3C021887.2 Cucumis melo HOM05D005180 ORTHO05D006136 4.5e-90 335.1 243 72.8
FvH4_2g13990 Fragaria vesca HOM05D005180 ORTHO05D006136 4.5e-90 335.1 244 72.5
FAN20G0932 Fragaria x ananassa HOM05D005180 ORTHO05D006136 4.5e-90 335.1 244 72.1
unitig_64.g29770 Utricularia gibba HOM05D005180 ORTHO05D006136 7.6e-90 334.3 243 74.9
Ca_00419_v3 Cicer arietinum L. HOM05D005180 ORTHO05D006136 1.7e-89 333.2 242 76.4
FAN24G0415 Fragaria x ananassa HOM05D005180 ORTHO05D006136 1.7e-89 333.2 244 72.1
Oeu032043.1 Olea europaea HOM05D005180 ORTHO05D006136 1.7e-89 333.2 242 78.1
Duzib106G0272 Durio zibethinus HOM05D005180 ORTHO05D006136 2.9e-89 332.4 243 78.2
PSO063G1868 Papaver somniferum HOM05D005180 ORTHO05D006136 3.8e-89 332.0 246 70.3
TAR374G0042 Trochodendron aralioides HOM05D005180 ORTHO05D006136 3.8e-89 332.0 243 77.4
unitig_62.g23868 Utricularia gibba HOM05D005180 ORTHO05D006136 3.8e-89 332.0 242 74.8
Actinidia24488 Actinidia chinensis HOM05D005180 ORTHO05D006136 6.4e-89 331.3 227 83.3
Migut.D00701 Erythranthe guttata HOM05D005180 ORTHO05D006136 6.4e-89 331.3 242 78.9
FAN15G0398 Fragaria x ananassa HOM05D005180 ORTHO05D006136 8.4e-89 330.9 244 71.7
Cfa016051 Carpinus fangiana HOM05D005180 ORTHO05D006136 1.1e-88 330.5 243 77.0
Aqoxy5G01637 Aquilegia oxysepala HOM05D005180 ORTHO05D006136 1.9e-88 329.7 243 71.2
TPR.G11750 Trifolium pratense HOM05D005180 ORTHO05D006136 1.9e-88 329.7 242 75.6
Manes.08G064700 Manihot esculenta HOM05D005180 ORTHO05D006136 2.4e-88 329.3 242 76.4
Thecc.05G216000 Theobroma cacao HOM05D005180 ORTHO05D006136 3.2e-88 328.9 243 77.4
QL09p023193 Quercus lobata HOM05D005180 ORTHO05D006136 7.1e-88 327.8 241 76.3
PGR004G2116 Punica granatum HOM05D005180 ORTHO05D006136 9.3e-88 327.4 252 70.6
Nn8g41146 Nelumbo nucifera HOM05D005180 ORTHO05D006136 2.1e-87 326.2 206 81.1
DCAR_016143 Daucus carota HOM05D005180 ORTHO05D006136 2.7e-87 325.9 242 76.0
Oeu025945.2 Olea europaea HOM05D005180 ORTHO05D006136 2.7e-87 325.9 199 83.9
VMungo0540G0753 Vigna mungo HOM05D005180 ORTHO05D006136 2.7e-87 325.9 242 75.2
ECA240G0118 Erigeron canadensis HOM05D005180 ORTHO05D006136 3.5e-87 325.5 240 71.7
Glyma.15G080600 Glycine max HOM05D005180 ORTHO05D006136 7.9e-87 324.3 243 74.9
Phvul.006G178100 Phaseolus vulgaris HOM05D005180 ORTHO05D006136 7.9e-87 324.3 242 74.8
Gohir.A02G141500 Gossypium hirsutum HOM05D005180 ORTHO05D006136 1.3e-86 323.6 243 76.1
Sc24g0001580 Simmondsia chinensis HOM05D005180 ORTHO05D006136 1.3e-86 323.6 242 71.1
COL.COLO4_15239 Corchorus olitorius HOM05D005180 ORTHO05D006136 1.8e-86 323.2 243 76.1
Os08g0160000 Oryza sativa ssp. japonica HOM05D005180 ORTHO05D006136 2.3e-86 322.8 243 74.5
Lsat_1_v5_gn_1_93761 Lactuca sativa HOM05D005180 ORTHO05D006136 8.7e-86 320.9 250 69.2
Psat1g199720 Pisum sativum HOM05D005180 ORTHO05D006136 1.1e-85 320.5 242 74.4
Duzib177G0947 Durio zibethinus HOM05D005180 ORTHO05D006136 1.5e-85 320.1 243 76.1
Lj2P827T12 Lonicera japonica HOM05D005180 ORTHO05D006136 1.5e-85 320.1 199 82.4
arahy.Tifrunner.gnm1.ann1.F0IXSY Arachis hypogaea HOM05D005180 ORTHO05D006136 1.9e-85 319.7 242 74.0
arahy.Tifrunner.gnm1.ann1.ZTB6Z9 Arachis hypogaea HOM05D005180 ORTHO05D006136 1.9e-85 319.7 242 74.0
arahy.Tifrunner.gnm1.ann1.ZY7ZXH Arachis hypogaea HOM05D005180 ORTHO05D006136 2.5e-85 319.3 242 74.0
AUR62005241 Chenopodium quinoa HOM05D005180 ORTHO05D006136 5.6e-85 318.2 242 71.1
Aqoxy3G02241 Aquilegia oxysepala HOM05D005180 ORTHO05D006136 1.3e-84 317.0 243 74.1
AUR62000723 Chenopodium quinoa HOM05D005180 ORTHO05D006136 1.3e-84 317.0 242 71.9
TWI32G1096 Tripterygium wilfordii HOM05D005180 ORTHO05D006136 1.6e-84 316.6 206 79.6
EL10Ac6g14989 Beta vulgaris HOM05D005180 ORTHO05D006136 2.1e-84 316.2 242 75.6
arahy.Tifrunner.gnm1.ann1.T3IE7U Arachis hypogaea HOM05D005180 ORTHO05D006136 2.8e-84 315.8 233 76.4
MBI19_g22663_MAGBIO Magnolia biondii HOM05D005180 ORTHO05D006136 2.8e-84 315.8 243 74.9
PSO782G2417 Papaver somniferum HOM05D005180 ORTHO05D006136 6.2e-84 314.7 243 72.4
TWI60G1377 Tripterygium wilfordii HOM05D005180 ORTHO05D006136 8.1e-84 314.3 205 79.5
Glyma.13G232100 Glycine max HOM05D005180 ORTHO05D006136 1.4e-83 313.5 244 73.0
Dinv16767 Davidia involucrata HOM05D005180 ORTHO05D006136 1.8e-83 313.2 211 85.8
Ah.04g161260 Amaranthus hybridus HOM05D005180 ORTHO05D006136 6.9e-83 311.2 242 69.8
CARHR196370 Cardamine hirsuta HOM05D005180 ORTHO05D006136 6.9e-83 311.2 244 68.0
HPP92_017562 Vanilla planifolia HOM05D005180 ORTHO05D006136 9.0e-83 310.8 226 75.2
Atru.chr5.727 Acer truncatum HOM05D005180 ORTHO05D006136 1.5e-82 310.1 202 80.2
Medtr2g015520 Medicago truncatula HOM05D005180 ORTHO05D006136 2.0e-82 309.7 242 71.9
Aa31LG5G13450 Aethionema arabicum HOM05D005180 ORTHO05D006136 4.5e-82 308.5 244 72.1
CANSAT56G1354 Cannabis sativa HOM05D005180 ORTHO05D006136 4.5e-82 308.5 246 72.0
AL3G12410 Arabidopsis lyrata HOM05D005180 ORTHO05D006136 7.6e-82 307.8 245 68.2
Thhalv10021437m.g Eutrema salsugineum HOM05D005180 ORTHO05D006136 7.6e-82 307.8 245 68.2
Lj6g0006583 Lotus japonicus HOM05D005180 ORTHO05D006136 7.6e-82 307.8 209 76.1
AT5G16790 Arabidopsis thaliana HOM05D005180 ORTHO05D006136 6.4e-81 304.7 214 74.8
Zm00001eb403820 Zea mays HOM05D005180 ORTHO05D006136 6.4e-81 304.7 243 70.4
AL6G27810 Arabidopsis lyrata HOM05D005180 ORTHO05D006136 8.4e-81 304.3 214 74.8
AT3G02950 Arabidopsis thaliana HOM05D005180 ORTHO05D006136 1.1e-80 303.9 245 67.3
Os05g0569800 Oryza sativa ssp. japonica HOM05D005180 ORTHO05D006136 1.1e-80 303.9 244 70.1
CDE02G3757 Ceratophyllum demersum HOM05D005180 ORTHO05D006136 5.5e-80 301.6 226 72.1
THA.LOC104820896 Tarenaya hassleriana HOM05D005180 ORTHO05D006136 5.5e-80 301.6 205 75.1
ATR0829G067 Amborella trichopoda HOM05D005180 ORTHO05D006136 9.3e-80 300.8 243 69.5
Potri.013G082900 Populus trichocarpa HOM05D005180 ORTHO05D006136 9.3e-80 300.8 193 79.8
CARHR076980 Cardamine hirsuta HOM05D005180 ORTHO05D006136 1.2e-79 300.4 245 66.9
Sp3g02010 Schrenkiella parvula HOM05D005180 ORTHO05D006136 2.7e-79 299.3 245 66.9
Carub.0003s0208 Capsella rubella HOM05D005180 ORTHO05D006136 6.0e-79 298.1 245 66.1
Zm00001eb001480 Zea mays HOM05D005180 ORTHO05D006136 8.7e-78 294.3 243 67.9
C05p63850 Brassica napus HOM05D005180 ORTHO05D006136 2.5e-77 292.7 215 70.7
BolC5t35050H Brassica oleracea HOM05D005180 ORTHO05D006136 2.5e-77 292.7 215 70.7
Hund05844 Selenicereus undatus HOM05D005180 ORTHO05D006136 7.4e-77 291.2 205 75.6
A05p44170 Brassica napus HOM05D005180 ORTHO05D006136 1.3e-76 290.4 215 70.2
BraSC90t46693Z Brassica rapa HOM05D005180 ORTHO05D006136 1.3e-76 290.4 215 70.2
Cpa.g.sc14.58 Carica papaya HOM05D005180 ORTHO05D006136 1.3e-73 280.4 183 77.6
SMO356G0075 Selaginella moellendorffii HOM05D005180 ORTHO05D006136 2.7e-71 272.7 209 67.0
AagrBONN_evm.TU.Sc2ySwM_344.1992 Anthoceros agrestis HOM05D005180 ORTHO05D006136 6.1e-71 271.6 195 71.8
Mapoly0076s0002 Marchantia polymorpha HOM05D005180 ORTHO05D006136 1.0e-70 270.8 226 63.7
CDE11G0176 Ceratophyllum demersum HOM05D005180 ORTHO05D006136 5.7e-69 265.0 176 73.9
Pp3c15_21620 Physcomitrium patens HOM05D005180 ORTHO05D006136 9.4e-64 247.7 196 64.3
Prupe.8G026900 Prunus persica HOM05D005180 ORTHO05D006136 4.8e-60 235.3 213 62.4
Carub.0006s1501 Capsella rubella HOM05D005180 ORTHO05D006136 5.3e-59 231.9 157 75.2
SEGI_37847 Sequoiadendron giganteum HOM05D005180 ORTHO05D006136 1.7e-57 226.9 188 64.9
SHI53994 Sapria himalayana HOM05D005180 ORTHO05D006136 4.7e-55 218.8 213 57.3
MD05G1022700 Malus domestica HOM05D005180 ORTHO05D006136 3.9e-54 215.7 171 70.2
MD00G1125800 Malus domestica HOM05D005180 ORTHO05D006136 2.7e-47 193.0 133 72.9
MD05G1023000 Malus domestica HOM05D005180 ORTHO05D006136 1.1e-45 187.6 243 51.0
Prupe.8G027200 Prunus persica HOM05D005180 ORTHO05D006136 2.4e-43 179.9 111 76.6
CBR_g51237 Chara braunii HOM05D005180 ORTHO05D006136 2.1e-39 166.8 176 51.7
CBR_g4125 Chara braunii HOM05D005180 ORTHO05D006136 1.3e-36 157.5 173 49.7
Glyma.07G081200 Glycine max HOM05D005180 ORTHO05D006136 5.9e-34 148.7 105 68.6
Solyc11g072180.3 Solanum lycopersicum HOM05D005180 ORTHO05D006136 4.0e-30 136.0 91 92.3
MCO09G003 Micromonas commoda HOM05D005180 ORTHO05D006136 1.4e-27 127.5 188 40.4
SHI47254 Sapria himalayana HOM05D005180 ORTHO05D006136 2.4e-27 126.7 99 66.7
Prupe.8G026600 Prunus persica HOM05D005180 ORTHO05D006136 7.0e-27 125.2 86 67.4
FvH4_4g00100 Fragaria vesca HOM05D005180 ORTHO05D006136 9.8e-21 104.8 91 65.9
Cre03.g182350 Chlamydomonas reinhardtii HOM05D005180 ORTHO05D006136 2.3e-17 93.6 189 31.2
SHI47253 Sapria himalayana HOM05D005180 ORTHO05D006136 5.2e-14 82.4 54 74.1
PRCOL_00001653 Prasinoderma coloniale HOM05D005180 ORTHO05D006136 5.4e-11 72.4 188 28.7
FAN23G1155 Fragaria x ananassa HOM05D001255 ORTHO05D011996 7.0e-11 72.0 80 56.2
FAN20G1163 Fragaria x ananassa HOM05D001255 ORTHO05D006136 3.9e-09 66.2 83 48.2
FAN23G1307 Fragaria x ananassa HOM05D005180 ORTHO05D006136 1.6e-07 60.8 63 57.1
FAN23G2223 Fragaria x ananassa HOM05D001255 ORTHO05D006136 1.1e-06 58.2 55 60.0


User provided reference genes

Program Settings