Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGSC0003DMG400022434 Solanum tuberosum HOM05D003743 ORTHO05D004311 0.0e+00 1115.5 653 100.0
Sopen02g023440 Solanum pennellii HOM05D003743 ORTHO05D004311 0.0e+00 1080.9 653 97.2
Solyc02g078580.1 Solanum lycopersicum HOM05D003743 ORTHO05D004311 0.0e+00 1080.5 653 97.1
Nitab4.5_0003668g0110 Nicotiana tabacum HOM05D003743 ORTHO05D004311 2.2e-285 985.3 659 87.3
Nitab4.5_0003347g0010 Nicotiana tabacum HOM05D003743 ORTHO05D004311 3.5e-283 978.0 659 87.3
CAN.G1627.16 Capsicum annuum HOM05D003743 ORTHO05D004311 4.5e-278 961.1 677 83.9
Peaxi162Scf00379g00092 Petunia axillaris HOM05D003743 ORTHO05D004311 2.3e-266 922.2 660 82.4
Dinv07531 Davidia involucrata HOM05D003743 ORTHO05D004311 3.5e-230 802.0 659 70.9
Hma1.2p1_0126F.1_g059170 Hydrangea macrophylla HOM05D003743 ORTHO05D004311 4.8e-224 781.6 659 72.2
Cc02_g12930 Coffea canephora HOM05D003743 ORTHO05D004311 1.2e-219 766.9 653 67.5
CSS0028072 Camellia sinensis var. sinensis HOM05D003743 ORTHO05D004311 1.0e-213 747.3 646 66.7
Manes.16G024900 Manihot esculenta HOM05D003743 ORTHO05D004311 6.8e-210 734.6 661 64.6
MELO3C017564.2 Cucumis melo HOM05D003743 ORTHO05D004311 4.1e-207 725.3 663 64.6
Thecc.06G191600 Theobroma cacao HOM05D003743 ORTHO05D004311 5.9e-206 721.5 662 63.4
CsaV3_4G005020 Cucumis sativus L. HOM05D003743 ORTHO05D004311 7.8e-206 721.1 663 62.9
COL.COLO4_31510 Corchorus olitorius HOM05D003743 ORTHO05D004311 2.3e-205 719.5 662 65.3
CiPaw.10G046600 Carya illinoinensis HOM05D003743 ORTHO05D004311 2.1e-203 713.0 662 65.1
Gorai.011G025800 Gossypium raimondii HOM05D003743 ORTHO05D004311 3.6e-203 712.2 661 66.0
Gohir.D10G024500 Gossypium hirsutum HOM05D003743 ORTHO05D004311 1.4e-202 710.3 662 65.6
Duzib160G0164 Durio zibethinus HOM05D003743 ORTHO05D004311 2.3e-202 709.5 664 62.8
Prupe.3G050300 Prunus persica HOM05D003743 ORTHO05D004311 3.1e-202 709.1 659 62.2
MD10G1061800 Malus domestica HOM05D003743 ORTHO05D004311 5.2e-202 708.4 660 63.2
Haze_06507 Corylus avellana HOM05D003743 ORTHO05D004311 6.8e-202 708.0 665 64.1
Gohir.A10G023800 Gossypium hirsutum HOM05D003743 ORTHO05D004311 6.8e-202 708.0 662 65.6
Oeu050830.1 Olea europaea HOM05D003743 ORTHO05D004311 2.6e-201 706.1 653 63.1
Cpa.g.sc27.76 Carica papaya HOM05D003743 ORTHO05D004311 9.8e-201 704.1 665 60.9
Duzib235G1026 Durio zibethinus HOM05D003743 ORTHO05D004311 9.8e-201 704.1 664 65.2
Glyma.07G194200 Glycine max HOM05D003743 ORTHO05D004311 9.8e-201 704.1 660 62.0
RcHm_v2.0_Chr5g0007801 Rosa chinensis HOM05D003743 ORTHO05D004311 3.7e-200 702.2 660 61.4
RhsimUnG0044100 Rhododendron simsii HOM05D003743 ORTHO05D004311 1.1e-199 700.7 673 66.1
Glyma.13G182500 Glycine max HOM05D003743 ORTHO05D004311 3.2e-199 699.1 660 61.8
VMungo0251G3484 Vigna mungo HOM05D003743 ORTHO05D004311 3.2e-199 699.1 661 62.3
Phvul.002G226300 Phaseolus vulgaris HOM05D003743 ORTHO05D004311 5.4e-199 698.4 661 61.9
HanXRQChr10g0285841 Helianthus annuus HOM05D003743 ORTHO05D004311 9.2e-199 697.6 612 64.4
Rhsim07G0025200 Rhododendron simsii HOM05D003743 ORTHO05D004311 1.2e-198 697.2 671 65.7
Eucgr.E03353 Eucalyptus grandis HOM05D003743 ORTHO05D004311 2.7e-198 696.0 658 61.1
FAN16G2290 Fragaria x ananassa HOM05D003743 ORTHO05D004311 6.0e-198 694.9 660 61.1
FAN21G0113 Fragaria x ananassa HOM05D003743 ORTHO05D004311 7.8e-198 694.5 660 61.1
Migut.M01180 Erythranthe guttata HOM05D003743 ORTHO05D004311 1.3e-197 693.7 660 63.8
FAN14G3620 Fragaria x ananassa HOM05D003743 ORTHO05D004311 1.3e-197 693.7 660 61.1
Ca_25733_v3 Cicer arietinum L. HOM05D003743 ORTHO05D004311 8.6e-197 691.0 661 62.5
FAN03G0627 Fragaria x ananassa HOM05D003743 ORTHO05D004311 1.5e-196 690.3 659 62.2
Sed0012938 Sechium edule HOM05D003743 ORTHO05D004311 1.5e-196 690.3 660 60.9
Psat7g112160 Pisum sativum HOM05D003743 ORTHO05D004311 2.5e-196 689.5 662 60.9
Potri.004G039500 Populus trichocarpa HOM05D003743 ORTHO05D004311 7.3e-196 688.0 675 59.1
FvH4_3g04783 Fragaria vesca HOM05D003743 ORTHO05D004311 3.6e-195 685.6 660 60.6
QL05p039342 Quercus lobata HOM05D003743 ORTHO05D004311 3.6e-195 685.6 667 63.3
QL10p057179 Quercus lobata HOM05D003743 ORTHO05D004311 3.6e-195 685.6 667 63.3
PGR042G1300 Punica granatum HOM05D003743 ORTHO05D004311 8.0e-195 684.5 666 58.6
DCAR_008049 Daucus carota HOM05D003743 ORTHO05D004311 1.4e-194 683.7 665 63.6
Medtr4g089070 Medicago truncatula HOM05D003743 ORTHO05D004311 1.4e-194 683.7 666 60.2
Lsat_1_v5_gn_2_40361 Lactuca sativa HOM05D003743 ORTHO05D004311 8.9e-194 681.0 658 61.6
THA.LOC104819165 Tarenaya hassleriana HOM05D003743 ORTHO05D004311 1.2e-193 680.6 667 58.5
Lalb_Chr05g0218341 Lupinus albus HOM05D003743 ORTHO05D004311 1.5e-193 680.2 660 60.8
TAR627G0572 Trochodendron aralioides HOM05D003743 ORTHO05D004311 4.4e-193 678.7 665 60.0
Potri.011G047900 Populus trichocarpa HOM05D003743 ORTHO05D004311 1.3e-192 677.2 664 59.0
Ciclev10028000m.g Citrus clementina HOM05D003743 ORTHO05D004311 6.4e-192 674.9 654 60.4
CSS0027200 Camellia sinensis var. sinensis HOM05D003743 ORTHO05D004311 8.3e-192 674.5 673 60.2
Sabra04G0024300 Salix brachista HOM05D003743 ORTHO05D004311 1.4e-191 673.7 665 60.2
TPR.G12063 Trifolium pratense HOM05D003743 ORTHO05D004311 5.4e-191 671.8 659 61.0
TWI23G0181 Tripterygium wilfordii HOM05D003743 ORTHO05D004311 4.6e-190 668.7 667 58.5
Lj4g0023106 Lotus japonicus HOM05D003743 ORTHO05D004311 7.8e-190 667.9 662 63.0
Sabra11G0033300 Salix brachista HOM05D003743 ORTHO05D004311 6.6e-189 664.8 662 57.7
Atru.chr7.2377 Acer truncatum HOM05D003743 ORTHO05D004311 1.6e-187 660.2 655 64.0
arahy.Tifrunner.gnm1.ann1.I4CLDN Arachis hypogaea HOM05D003743 ORTHO05D004311 3.6e-187 659.1 660 58.8
Nn1g07800 Nelumbo nucifera HOM05D003743 ORTHO05D004311 1.1e-186 657.5 662 63.4
CANSAT35G0257 Cannabis sativa HOM05D003743 ORTHO05D004311 3.1e-186 656.0 686 61.2
TAR629G2996 Trochodendron aralioides HOM05D003743 ORTHO05D004311 3.1e-186 656.0 662 59.1
Lj8P171T25 Lonicera japonica HOM05D003743 ORTHO05D004311 2.6e-185 652.9 542 66.8
SGA_v2.0_scaffold100G29640 Striga asiatica HOM05D003743 ORTHO05D004311 3.7e-184 649.0 655 61.8
unitig_748.g8020 Utricularia gibba HOM05D003743 ORTHO05D004311 3.7e-184 649.0 654 61.3
DCAR_004097 Daucus carota HOM05D003743 ORTHO05D004311 1.4e-183 647.1 663 61.8
Aa31LG2G9550 Aethionema arabicum HOM05D003743 ORTHO05D004311 1.3e-181 640.6 659 55.7
SalBow8G3648 Salvia bowleyana HOM05D003743 ORTHO05D004311 1.5e-180 637.1 564 65.1
A01p29850 Brassica napus HOM05D003743 ORTHO05D004311 1.2e-179 634.0 659 59.2
Thhalv10023338m.g Eutrema salsugineum HOM05D003743 ORTHO05D004311 1.1e-178 630.9 668 54.3
Carub.0002s0416 Capsella rubella HOM05D003743 ORTHO05D004311 1.8e-178 630.2 657 54.6
Prupe.6G309900 Prunus persica HOM05D003743 ORTHO05D004311 6.8e-178 628.2 657 56.2
Sc05g0007850 Simmondsia chinensis HOM05D003743 ORTHO05D004311 1.2e-177 627.5 657 56.3
BcaC06g31829 Brassica carinata HOM05D003743 ORTHO05D004311 4.4e-177 625.5 665 54.7
QL03p016879 Quercus lobata HOM05D003743 ORTHO05D004311 7.6e-177 624.8 660 55.6
BcaB04g20309 Brassica carinata HOM05D003743 ORTHO05D004311 1.7e-176 623.6 669 58.7
AT1G61040 Arabidopsis thaliana HOM05D003743 ORTHO05D004311 2.9e-176 622.9 660 54.5
Sp2g03480 Schrenkiella parvula HOM05D003743 ORTHO05D004311 2.9e-176 622.9 661 54.8
AL2G15400 Arabidopsis lyrata HOM05D003743 ORTHO05D004311 4.9e-176 622.1 660 54.5
MBI04_g36401_MAGBIO Magnolia biondii HOM05D003743 ORTHO05D004311 1.9e-175 620.2 659 58.4
CARHR052180 Cardamine hirsuta HOM05D003743 ORTHO05D004311 3.2e-175 619.4 661 54.3
BraA01t03113Z Brassica rapa HOM05D003743 ORTHO05D004311 2.7e-174 616.3 658 57.9
EL10Ac8g20336 Beta vulgaris HOM05D003743 ORTHO05D004311 7.8e-174 614.8 662 55.4
DCAR_004099 Daucus carota HOM05D003743 ORTHO05D004311 3.0e-173 612.8 661 59.5
C01p37700 Brassica napus HOM05D003743 ORTHO05D004311 6.6e-173 611.7 660 54.2
RcHm_v2.0_Chr3g0457571 Rosa chinensis HOM05D003743 ORTHO05D004311 6.6e-173 611.7 661 55.2
Ah.09g235750 Amaranthus hybridus HOM05D003743 ORTHO05D004311 1.5e-172 610.5 664 54.2
BcaC02g10594 Brassica carinata HOM05D003743 ORTHO05D004311 1.5e-172 610.5 661 55.4
C04p25600 Brassica napus HOM05D003743 ORTHO05D004311 1.5e-172 610.5 661 55.4
Glyma.03G168800 Glycine max HOM05D003743 ORTHO05D004311 2.5e-172 609.8 660 57.3
FAN25G1603 Fragaria x ananassa HOM05D003743 ORTHO05D004311 3.3e-172 609.4 613 59.2
Aqoxy1G03805 Aquilegia oxysepala HOM05D003743 ORTHO05D004311 1.2e-171 607.4 663 55.4
Glyma.19G170200 Glycine max HOM05D003743 ORTHO05D004311 2.1e-171 606.7 662 57.1
PSO170G2796 Papaver somniferum HOM05D003743 ORTHO05D004311 3.6e-171 605.9 672 56.7
Lj1g0019037 Lotus japonicus HOM05D003743 ORTHO05D004311 4.7e-171 605.5 658 61.1
BcaC09g49339 Brassica carinata HOM05D003743 ORTHO05D004311 8.1e-171 604.7 654 54.0
HPP92_024423 Vanilla planifolia HOM05D003743 ORTHO05D004311 1.1e-170 604.4 664 53.9
FvH4_6g07870 Fragaria vesca HOM05D003743 ORTHO05D004311 4.0e-170 602.4 661 53.9
FAN05G4405 Fragaria x ananassa HOM05D003743 ORTHO05D004311 5.8e-169 598.6 660 53.0
Ah.04g152550 Amaranthus hybridus HOM05D003743 ORTHO05D004311 7.6e-169 598.2 661 53.3
ECA240G0220 Erigeron canadensis HOM05D003743 ORTHO05D004311 7.6e-169 598.2 676 54.7
PSO210G5871 Papaver somniferum HOM05D003743 ORTHO05D004311 2.2e-168 596.7 671 54.4
Psat3g052160 Pisum sativum HOM05D003743 ORTHO05D004311 4.9e-168 595.5 604 58.6
FAN14G1138 Fragaria x ananassa HOM05D003743 ORTHO05D004311 8.4e-168 594.7 661 53.3
FAN09G3903 Fragaria x ananassa HOM05D003743 ORTHO05D004311 5.4e-167 592.0 661 53.4
Lalb_Chr16g0383591 Lupinus albus HOM05D003743 ORTHO05D004311 1.6e-166 590.5 655 57.9
Phvul.001G167200 Phaseolus vulgaris HOM05D003743 ORTHO05D004311 1.6e-166 590.5 661 54.9
AUR62016972 Chenopodium quinoa HOM05D003743 ORTHO05D004311 2.1e-166 590.1 669 53.5
SHI01836 Sapria himalayana HOM05D003743 ORTHO05D004311 3.9e-165 585.9 667 53.8
Ca_08759_v3 Cicer arietinum L. HOM05D003743 ORTHO05D004311 1.5e-164 583.9 548 60.6
Ca_30219_v3 Cicer arietinum L. HOM05D003743 ORTHO05D004311 1.5e-164 583.9 548 60.6
ATR0763G146 Amborella trichopoda HOM05D003743 ORTHO05D004311 2.4e-162 576.6 669 54.6
AUR62020979 Chenopodium quinoa HOM05D003743 ORTHO05D004311 1.3e-160 570.9 657 51.4
CDE02G2043 Ceratophyllum demersum HOM05D003743 ORTHO05D004311 1.7e-160 570.5 657 54.0
FAN02G2028 Fragaria x ananassa HOM05D003743 ORTHO05D004311 1.1e-159 567.8 656 51.8
MBI16_g34925_MAGBIO Magnolia biondii HOM05D003743 ORTHO05D004311 9.3e-159 564.7 659 56.1
VMungo1383G3375 Vigna mungo HOM05D003743 ORTHO05D004311 1.0e-157 561.2 654 53.1
AUR62014784 Chenopodium quinoa HOM05D003743 ORTHO05D004311 3.9e-157 559.3 650 54.5
Phvul.001G224300 Phaseolus vulgaris HOM05D003743 ORTHO05D004311 6.7e-157 558.5 668 51.2
Lalb_Chr04g0260391 Lupinus albus HOM05D003743 ORTHO05D004311 2.1e-155 553.5 668 51.0
TPR.G30857 Trifolium pratense HOM05D003743 ORTHO05D004311 2.1e-155 553.5 661 52.8
VMungo1383G2741 Vigna mungo HOM05D003743 ORTHO05D004311 4.8e-155 552.4 669 51.0
Medtr7g099060 Medicago truncatula HOM05D003743 ORTHO05D004311 7.6e-153 545.0 566 55.5
MD04G1191400 Malus domestica HOM05D003743 ORTHO05D004311 1.0e-152 544.7 657 51.1
CANSAT54G1490 Cannabis sativa HOM05D003743 ORTHO05D004311 1.4e-151 540.8 655 51.0
Glyma.03G230500 Glycine max HOM05D003743 ORTHO05D004311 1.4e-151 540.8 674 52.8
SEGI_13209 Sequoiadendron giganteum HOM05D003743 ORTHO05D004311 7.9e-150 535.0 660 52.7
AUR62043193 Chenopodium quinoa HOM05D003743 ORTHO05D004311 3.3e-148 529.6 660 48.6
Aqoxy3G03252 Aquilegia oxysepala HOM05D003743 ORTHO05D004311 4.8e-147 525.8 663 49.9
EL10Ac8g18529 Beta vulgaris HOM05D003743 ORTHO05D004311 1.6e-139 500.7 542 55.5
Zm00001eb137720 Zea mays HOM05D003743 ORTHO05D004311 1.4e-138 497.7 668 48.7
Psat7g225840 Pisum sativum HOM05D003743 ORTHO05D004311 1.8e-138 497.3 681 45.8
MBI16_g34928_MAGBIO Magnolia biondii HOM05D003743 ORTHO05D004311 2.4e-138 496.9 647 53.6
Zm00001eb410600 Zea mays HOM05D003743 ORTHO05D004311 2.4e-138 496.9 673 48.1
Ca_20186_v3 Cicer arietinum L. HOM05D003743 ORTHO05D004311 1.5e-137 494.2 684 46.2
Lj1g0026238 Lotus japonicus HOM05D003743 ORTHO05D004311 1.0e-136 491.5 660 48.0
Sc06g0009130 Simmondsia chinensis HOM05D003743 ORTHO05D004311 1.9e-135 487.3 653 48.2
Os12g0535900 Oryza sativa ssp. japonica HOM05D003743 ORTHO05D004311 3.2e-135 486.5 625 49.4
TPR.G34103 Trifolium pratense HOM05D003743 ORTHO05D004311 1.0e-133 481.5 683 44.9
Medtr4g032885 Medicago truncatula HOM05D003743 ORTHO05D004311 6.7e-133 478.8 618 48.9
arahy.Tifrunner.gnm1.ann1.58ANB0 Arachis hypogaea HOM05D003743 ORTHO05D004311 1.1e-130 471.5 662 47.6
Actinidia05611 Actinidia chinensis HOM05D003743 ORTHO05D004311 8.2e-123 445.3 402 68.4
Mapoly0001s0024 Marchantia polymorpha HOM05D003743 ORTHO05D004311 3.6e-118 429.9 696 46.8
AagrBONN_evm.TU.Sc2ySwM_368.1522 Anthoceros agrestis HOM05D003743 ORTHO05D004311 1.5e-116 424.5 660 44.2
Pp3c12_17420 Physcomitrium patens HOM05D003743 ORTHO05D004311 2.2e-115 420.6 624 45.7
FvH4_6g03621 Fragaria vesca HOM05D003743 ORTHO05D004311 2.7e-102 377.1 402 56.7
BolC1t03734H Brassica oleracea HOM05D003743 ORTHO05D004311 4.0e-101 373.2 421 53.4
Glyma.13G060000 Glycine max HOM05D003743 ORTHO05D004311 2.0e-100 370.9 400 56.0
Lj1P877T22 Lonicera japonica HOM05D003743 ORTHO05D004311 4.9e-91 339.7 310 61.3
A03p68920 Brassica napus HOM05D003743 ORTHO05D004311 3.2e-90 337.0 658 43.0
Mapoly0009s0176 Marchantia polymorpha HOM05D003743 ORTHO05D004311 1.2e-86 325.1 670 37.9
SMO118G0429 Selaginella moellendorffii HOM05D003743 ORTHO05D004311 1.4e-85 321.6 553 42.3
Oeu016117.1 Olea europaea HOM05D003743 ORTHO05D004311 2.3e-80 304.3 590 41.4
BraSC39t46172Z Brassica rapa HOM05D003743 ORTHO05D004311 5.8e-76 289.7 544 43.4
ECA248G2279 Erigeron canadensis HOM05D003743 ORTHO05D004311 4.1e-74 283.5 434 42.6
GSVIVG01006453001 Vitis vinifera HOM05D003743 ORTHO05D004311 7.3e-71 272.7 234 65.4
CBR_g30024 Chara braunii HOM05D003743 ORTHO05D004311 1.6e-62 245.0 640 37.8
Zm00001eb087640 Zea mays HOM05D003743 ORTHO05D004311 6.0e-49 199.9 266 43.2
Lalb_Chr20g0113451 Lupinus albus HOM05D003743 ORTHO05D004311 7.9e-33 146.4 113 63.7
MBI04_g35990_MAGBIO Magnolia biondii HOM05D003743 ORTHO05D004311 1.9e-31 141.7 222 47.3
FvH4_6g03622 Fragaria vesca HOM05D003743 ORTHO05D004311 5.3e-29 133.7 77 85.7
Aqoxy3G03215 Aquilegia oxysepala HOM05D003743 ORTHO05D004311 2.1e-25 121.7 109 56.0
EL10Ac4g08952 Beta vulgaris HOM05D003743 ORTHO05D004311 1.1e-23 115.9 157 47.1
ECA246G3327 Erigeron canadensis HOM05D001482 ORTHO05D001499 1.5e-23 115.5 73 79.5
SGA_v2.0_scaffold49G18283 Striga asiatica HOM05D003743 ORTHO05D004311 1.1e-21 109.4 135 43.0
Rhsim02G0125200 Rhododendron simsii HOM05D003743 ORTHO05D004311 1.7e-19 102.1 61 77.0
Nitab4.5_0000556g0130 Nicotiana tabacum HOM05D002396 ORTHO05D002779 1.2e-17 95.9 93 68.8
Aqoxy3G03214 Aquilegia oxysepala HOM05D003743 ORTHO05D004311 2.1e-17 95.1 78 66.7
Aqoxy3G03213 Aquilegia oxysepala HOM05D003743 ORTHO05D004311 3.6e-17 94.4 74 62.2
MD05G1317500 Malus domestica HOM05D003743 ORTHO05D004311 5.3e-13 80.5 123 43.9
PRCOL_00005809 Prasinoderma coloniale HOM05D003743 ORTHO05D004311 5.9e-12 77.0 281 26.7
EL10Ac5g12107 Beta vulgaris HOM05D003743 ORTHO05D004311 2.9e-11 74.7 60 61.7
Cre03.g196450 Chlamydomonas reinhardtii HOM05D003743 ORTHO05D004311 4.7e-09 67.4 464 23.1
Lj8E171T0 Lonicera japonica HOM05D003743 ORTHO05D004311 7.4e-07 60.1 78 75.6


User provided reference genes

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