Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGSC0003DMG400022217 Solanum tuberosum HOM05D003917 ORTHO05D005104 2.9e-91 338.6 173 100.0
Solyc07g064600.3 Solanum lycopersicum HOM05D003917 ORTHO05D005104 1.6e-86 322.8 175 95.4
Sopen07g032790 Solanum pennellii HOM05D003917 ORTHO05D005104 4.6e-81 304.7 164 95.7
Peaxi162Scf00834g00044 Petunia axillaris HOM05D003917 ORTHO05D005104 4.1e-53 211.8 180 60.6
Migut.H01827 Erythranthe guttata HOM05D003917 ORTHO05D005104 1.5e-52 209.9 184 60.3
Sopen10g002240 Solanum pennellii HOM05D003917 ORTHO05D005104 2.0e-52 209.5 181 60.2
GSVIVG01037650001 Vitis vinifera HOM05D003917 ORTHO05D005104 2.0e-52 209.5 186 60.8
MD11G1217800 Malus domestica HOM05D003917 ORTHO05D005104 2.6e-52 209.1 181 62.4
RhsimUnG0250500 Rhododendron simsii HOM05D003917 ORTHO05D005104 2.6e-52 209.1 187 59.9
QL08p010140 Quercus lobata HOM05D003917 ORTHO05D005104 3.4e-52 208.8 175 62.3
Hma1.2p1_0673F.1_g201365 Hydrangea macrophylla HOM05D003917 ORTHO05D005104 4.5e-52 208.4 189 59.8
Hma1.2p1_0673F.1_g201370 Hydrangea macrophylla HOM05D003917 ORTHO05D005104 4.5e-52 208.4 189 59.8
PGR083G1099 Punica granatum HOM05D003917 ORTHO05D005104 4.5e-52 208.4 179 62.0
PGSC0003DMG400014388 Solanum tuberosum HOM05D003917 ORTHO05D005104 4.5e-52 208.4 181 60.2
ClCG10G005360 Citrullus lanatus HOM05D003917 ORTHO05D005104 5.8e-52 208.0 181 60.8
MD03G1200800 Malus domestica HOM05D003917 ORTHO05D005104 5.8e-52 208.0 181 61.9
CsaV3_3G005080 Cucumis sativus L. HOM05D003917 ORTHO05D005104 7.6e-52 207.6 181 60.2
CSS0021043 Camellia sinensis var. sinensis HOM05D003917 ORTHO05D005104 1.0e-51 207.2 186 59.1
Solyc10g006290.3 Solanum lycopersicum HOM05D003917 ORTHO05D005104 1.0e-51 207.2 181 59.7
CANSAT01G2526 Cannabis sativa HOM05D003917 ORTHO05D005104 1.7e-51 206.5 187 59.9
MBI18_g14473_MAGBIO Magnolia biondii HOM05D003917 ORTHO05D005104 1.7e-51 206.5 185 58.9
Prupe.4G213500 Prunus persica HOM05D003917 ORTHO05D005104 3.8e-51 205.3 181 60.2
vmacro09714 Vaccinium macrocarpon HOM05D003917 ORTHO05D005104 3.8e-51 205.3 189 58.2
Cc05_g13680 Coffea canephora HOM05D003917 ORTHO05D005104 5.0e-51 204.9 187 61.0
Glyma.18G096900 Glycine max HOM05D003917 ORTHO05D005104 5.0e-51 204.9 185 58.9
CSS0032620 Camellia sinensis var. sinensis HOM05D003917 ORTHO05D005104 8.4e-51 204.1 186 59.1
Glyma.08G316200 Glycine max HOM05D003917 ORTHO05D005104 8.4e-51 204.1 185 59.5
TAR626G1684 Trochodendron aralioides HOM05D003917 ORTHO05D005104 8.4e-51 204.1 176 60.8
FvH4_3g22680 Fragaria vesca HOM05D003917 ORTHO05D005104 1.1e-50 203.8 181 60.2
FAN21G1759 Fragaria x ananassa HOM05D003917 ORTHO05D005104 1.1e-50 203.8 181 60.2
FAN25G1034 Fragaria x ananassa HOM05D003917 ORTHO05D005104 1.1e-50 203.8 181 60.2
MSTRG.14435 Avicennia marina HOM05D003917 ORTHO05D005104 4.2e-50 201.8 181 60.8
BcaB04g20655 Brassica carinata HOM05D003917 ORTHO05D005104 4.2e-50 201.8 157 65.6
CiPaw.12G129800 Carya illinoinensis HOM05D003917 ORTHO05D005104 4.2e-50 201.8 183 59.0
Ca_01713_v3 Cicer arietinum L. HOM05D003917 ORTHO05D005104 5.5e-50 201.4 185 57.8
Medtr3g051740 Medicago truncatula HOM05D003917 ORTHO05D005104 5.5e-50 201.4 186 57.0
Sc16g0006040 Simmondsia chinensis HOM05D003917 ORTHO05D005104 5.5e-50 201.4 180 58.9
BcaB04g19109 Brassica carinata HOM05D003917 ORTHO05D005104 7.1e-50 201.1 161 62.7
ECA240G3908 Erigeron canadensis HOM05D003917 ORTHO05D005104 7.1e-50 201.1 179 63.1
HanXRQChr03g0076521 Helianthus annuus HOM05D003917 ORTHO05D005104 7.1e-50 201.1 178 61.8
Hund01991 Selenicereus undatus HOM05D003917 ORTHO05D005104 7.1e-50 201.1 177 59.3
Lalb_Chr20g0113861 Lupinus albus HOM05D003917 ORTHO05D005104 9.3e-50 200.7 181 59.1
SGA_v2.0_scaffold8G04319 Striga asiatica HOM05D003917 ORTHO05D005104 9.3e-50 200.7 184 57.6
BcaC05g28323 Brassica carinata HOM05D003917 ORTHO05D005104 1.2e-49 200.3 173 61.8
A05p28510 Brassica napus HOM05D003917 ORTHO05D005104 1.2e-49 200.3 173 61.8
C05p43960 Brassica napus HOM05D003917 ORTHO05D005104 1.2e-49 200.3 173 61.8
BolC5t33114H Brassica oleracea HOM05D003917 ORTHO05D005104 1.2e-49 200.3 173 61.8
Cfa020343 Carpinus fangiana HOM05D003917 ORTHO05D005104 1.6e-49 199.9 185 57.3
PSO832G0061 Papaver somniferum HOM05D003917 ORTHO05D005104 2.1e-49 199.5 186 59.1
Sed0004226 Sechium edule HOM05D003917 ORTHO05D005104 2.1e-49 199.5 171 60.8
CARHR096100 Cardamine hirsuta HOM05D003917 ORTHO05D005104 2.7e-49 199.1 163 62.6
Eucgr.L03176 Eucalyptus grandis HOM05D003917 ORTHO05D005104 2.7e-49 199.1 175 59.4
EL10Ac4g07805 Beta vulgaris HOM05D003917 ORTHO05D005104 3.5e-49 198.7 174 59.8
Dinv22262 Davidia involucrata HOM05D006187 ORTHO05D007621 3.5e-49 198.7 172 63.4
Nitab4.5_0004829g0030 Nicotiana tabacum HOM05D003917 ORTHO05D005104 3.5e-49 198.7 201 53.7
Phvul.006G043400 Phaseolus vulgaris HOM05D003917 ORTHO05D005104 3.5e-49 198.7 185 56.8
arahy.Tifrunner.gnm1.ann1.ZCST78 Arachis hypogaea HOM05D003917 ORTHO05D005104 4.6e-49 198.4 187 58.3
Carub.0003s2033 Capsella rubella HOM05D003917 ORTHO05D005104 4.6e-49 198.4 172 61.0
CAN.G1781.2 Capsicum annuum HOM05D003917 ORTHO05D005104 4.6e-49 198.4 158 63.9
Eucgr.F00763 Eucalyptus grandis HOM05D003917 ORTHO05D005104 4.6e-49 198.4 175 59.4
A03p41760 Brassica napus HOM05D003917 ORTHO05D005104 7.9e-49 197.6 142 67.6
BraA03t13329Z Brassica rapa HOM05D003917 ORTHO05D005104 7.9e-49 197.6 142 67.6
C03p51140 Brassica napus HOM05D003917 ORTHO05D005104 1.0e-48 197.2 142 67.6
BcaC01g03555 Brassica carinata HOM05D003917 ORTHO05D005104 1.8e-48 196.4 145 66.2
VMungo0647G2080 Vigna mungo HOM05D003917 ORTHO05D005104 1.8e-48 196.4 178 57.9
arahy.Tifrunner.gnm1.ann1.YBSA71 Arachis hypogaea HOM05D003917 ORTHO05D005104 2.3e-48 196.1 187 57.8
ECA246G4209 Erigeron canadensis HOM05D003917 ORTHO05D005104 2.3e-48 196.1 135 72.6
Glyma.14G023600 Glycine max HOM05D003917 ORTHO05D005104 2.3e-48 196.1 178 57.9
TPR.G1217 Trifolium pratense HOM05D003917 ORTHO05D005104 2.3e-48 196.1 179 58.7
Aa31LG8G7200 Aethionema arabicum HOM05D003917 ORTHO05D005104 3.0e-48 195.7 163 61.3
Ah.06g186000 Amaranthus hybridus HOM05D003917 ORTHO05D005104 3.0e-48 195.7 181 57.5
Potri.001G435700 Populus trichocarpa HOM05D003917 ORTHO05D005104 3.0e-48 195.7 174 61.5
VMungo0540G1915 Vigna mungo HOM05D003917 ORTHO05D005104 3.0e-48 195.7 171 58.5
BcaB06g26102 Brassica carinata HOM05D003917 ORTHO05D005104 3.9e-48 195.3 164 61.6
BcaB06g26104 Brassica carinata HOM05D003917 ORTHO05D005104 3.9e-48 195.3 164 61.6
Thhalv10021595m.g Eutrema salsugineum HOM05D003917 ORTHO05D005104 3.9e-48 195.3 147 65.3
Os07g0516200 Oryza sativa ssp. japonica HOM05D003917 ORTHO05D005104 5.1e-48 194.9 179 57.5
RcHm_v2.0_Chr5g0039491 Rosa chinensis HOM05D003917 ORTHO05D005104 5.1e-48 194.9 184 60.3
Atru.chr2.3409 Acer truncatum HOM05D003917 ORTHO05D005104 6.7e-48 194.5 180 58.9
Oeu005531.1 Olea europaea HOM05D003917 ORTHO05D005104 6.7e-48 194.5 175 61.7
Gohir.D13G142900 Gossypium hirsutum HOM05D003917 ORTHO05D005104 8.7e-48 194.1 174 59.8
Sp3g18400 Schrenkiella parvula HOM05D003917 ORTHO05D005104 1.1e-47 193.7 172 60.5
C01p43730 Brassica napus HOM05D003917 ORTHO05D005104 1.5e-47 193.4 145 68.3
BolC1t04332H Brassica oleracea HOM05D003917 ORTHO05D005104 1.5e-47 193.4 145 68.3
HanXRQChr05g0159361 Helianthus annuus HOM05D003917 ORTHO05D005104 1.5e-47 193.4 183 59.6
PSO210G5830 Papaver somniferum HOM05D003917 ORTHO05D005104 1.5e-47 193.4 186 57.5
Duzib213G0954 Durio zibethinus HOM05D003917 ORTHO05D005104 1.9e-47 193.0 174 59.8
Lj6g0025956 Lotus japonicus HOM05D003917 ORTHO05D005104 1.9e-47 193.0 187 59.4
BcaC09g48993 Brassica carinata HOM05D003917 ORTHO05D005104 2.5e-47 192.6 145 65.5
Lsat_1_v5_gn_5_3940 Lactuca sativa HOM05D003917 ORTHO05D005104 2.5e-47 192.6 191 56.5
Lalb_Chr15g0081161 Lupinus albus HOM05D003917 ORTHO05D005104 2.5e-47 192.6 181 58.6
Gohir.A13G138100 Gossypium hirsutum HOM05D003917 ORTHO05D005104 3.3e-47 192.2 174 59.2
QL08p010146 Quercus lobata HOM05D003917 ORTHO05D005104 3.3e-47 192.2 129 72.1
SMO144G0016 Selaginella moellendorffii HOM05D003917 ORTHO05D005104 3.3e-47 192.2 129 70.5
BraA01t03528Z Brassica rapa HOM05D003917 ORTHO05D005104 4.3e-47 191.8 145 66.9
AUR62015777 Chenopodium quinoa HOM05D003917 ORTHO05D005104 4.3e-47 191.8 180 57.2
HPP92_004132 Vanilla planifolia HOM05D003917 ORTHO05D005104 4.3e-47 191.8 167 56.9
AUR62020441 Chenopodium quinoa HOM05D003917 ORTHO05D005104 5.7e-47 191.4 182 56.0
Gorai.013G159800 Gossypium raimondii HOM05D003917 ORTHO05D005104 5.7e-47 191.4 181 57.5
Lalb_Chr17g0348491 Lupinus albus HOM05D003917 ORTHO05D005104 5.7e-47 191.4 178 59.0
Thecc.07G036800 Theobroma cacao HOM05D003917 ORTHO05D005104 5.7e-47 191.4 174 59.2
CDE11G0283 Ceratophyllum demersum HOM05D000789 ORTHO05D005104 7.4e-47 191.0 125 74.4
LjContig00272g0007438 Lotus japonicus HOM05D003917 ORTHO05D005104 7.4e-47 191.0 186 57.0
A01p34300 Brassica napus HOM05D003917 ORTHO05D005104 9.7e-47 190.7 145 66.9
COL.COLO4_09663 Corchorus olitorius HOM05D003917 ORTHO05D005104 9.7e-47 190.7 174 59.2
Haze_09691 Corylus avellana HOM05D003917 ORTHO05D005104 9.7e-47 190.7 122 74.6
DCAR_016705 Daucus carota HOM05D003917 ORTHO05D005104 1.6e-46 189.9 177 59.3
Dinv40754 Davidia involucrata HOM05D003917 ORTHO05D005104 2.2e-46 189.5 184 56.5
THA.LOC104816925 Tarenaya hassleriana HOM05D003917 ORTHO05D005104 2.2e-46 189.5 126 72.2
AT3G20390 Arabidopsis thaliana HOM05D003917 ORTHO05D005104 3.7e-46 188.7 172 58.7
Sabra16G0289800 Salix brachista HOM05D003917 ORTHO05D005104 3.7e-46 188.7 124 73.4
AL3G34100 Arabidopsis lyrata HOM05D003917 ORTHO05D005104 8.2e-46 187.6 172 58.1
Manes.15G071800 Manihot esculenta HOM05D003917 ORTHO05D005104 8.2e-46 187.6 171 60.2
Medtr5g092740 Medicago truncatula HOM05D003917 ORTHO05D005104 8.2e-46 187.6 184 56.0
Nn1g03531 Nelumbo nucifera HOM05D003917 ORTHO05D005104 8.2e-46 187.6 224 49.6
TWI39G1026 Tripterygium wilfordii HOM05D003917 ORTHO05D005104 1.1e-45 187.2 184 55.4
Actinidia35344 Actinidia chinensis HOM05D006187 ORTHO05D007621 3.1e-45 185.7 169 58.0
Aqoxy1G03502 Aquilegia oxysepala HOM05D003917 ORTHO05D005104 5.3e-45 184.9 123 71.5
Psat2g010880 Pisum sativum HOM05D003917 ORTHO05D005104 5.3e-45 184.9 172 55.2
Psat5g178840 Pisum sativum HOM05D003917 ORTHO05D005104 5.3e-45 184.9 185 54.6
MD11G1218500 Malus domestica HOM05D003917 ORTHO05D005104 6.9e-45 184.5 178 56.7
unitig_22.g6623 Utricularia gibba HOM05D001290 ORTHO05D001180 6.9e-45 184.5 171 58.5
Zm00001eb322650 Zea mays HOM05D003917 ORTHO05D005104 6.9e-45 184.5 168 57.7
Sabra11G0125600 Salix brachista HOM05D003917 ORTHO05D005104 9.0e-45 184.1 128 71.1
Oeu007580.1 Olea europaea HOM05D003917 ORTHO05D005104 1.2e-44 183.7 123 71.5
Potri.011G139600 Populus trichocarpa HOM05D003917 ORTHO05D005104 4.5e-44 181.8 123 71.5
ClCG10G005350 Citrullus lanatus HOM05D003917 ORTHO05D005104 1.0e-43 180.6 164 61.6
Lj8C169T22 Lonicera japonica HOM05D003917 ORTHO05D005104 2.9e-43 179.1 189 51.9
Mapoly0108s0009 Marchantia polymorpha HOM05D003917 ORTHO05D005104 5.0e-43 178.3 122 70.5
unitig_8.g3276 Utricularia gibba HOM05D003917 ORTHO05D005104 5.0e-43 178.3 170 57.1
Ciclev10009443m.g Citrus clementina HOM05D003917 ORTHO05D005104 1.1e-42 177.2 206 49.0
MELO3C025369.2 Cucumis melo HOM05D003917 ORTHO05D005104 1.9e-42 176.4 186 55.9
AagrBONN_evm.TU.Sc2ySwM_117.1972 Anthoceros agrestis HOM05D003917 ORTHO05D005104 2.5e-42 176.0 122 69.7
Sed0024585 Sechium edule HOM05D003917 ORTHO05D005104 2.5e-42 176.0 183 56.8
A01p34290 Brassica napus HOM05D003917 ORTHO05D005104 5.5e-42 174.9 135 65.2
CsaV3_3G005070 Cucumis sativus L. HOM05D003917 ORTHO05D005104 7.2e-42 174.5 144 63.9
Pp3c13_21770 Physcomitrium patens HOM05D003917 ORTHO05D005104 3.6e-41 172.2 123 65.9
Duzib093G2089 Durio zibethinus HOM05D003917 ORTHO05D005104 4.6e-41 171.8 142 61.3
MELO3C031909.2 Cucumis melo HOM05D003917 ORTHO05D005104 2.3e-40 169.5 146 61.6
Sed0017343 Sechium edule HOM05D003917 ORTHO05D005104 8.8e-40 167.5 142 64.1
Nitab4.5_0001393g0140 Nicotiana tabacum HOM05D003917 ORTHO05D005104 1.1e-39 167.2 185 50.3
CiPaw.11G189400 Carya illinoinensis HOM05D003917 ORTHO05D005104 4.1e-37 158.7 180 51.7
CBR_g32332 Chara braunii HOM05D003917 ORTHO05D005104 6.9e-37 157.9 123 62.6
Lj1A872G53 Lonicera japonica HOM05D003917 ORTHO05D005104 6.9e-37 157.9 184 51.1
FAN11G2833 Fragaria x ananassa HOM05D003917 ORTHO05D005104 2.9e-35 152.5 153 54.9
PRCOL_00004025 Prasinoderma coloniale HOM05D003917 ORTHO05D005104 1.9e-34 149.8 125 60.0
Cre16.g669650 Chlamydomonas reinhardtii HOM05D003917 ORTHO05D005104 7.2e-34 147.9 174 50.6
MCO11G845 Micromonas commoda HOM05D003917 ORTHO05D005104 9.4e-34 147.5 122 57.4
Lsat_1_v5_gn_9_93900 Lactuca sativa HOM05D003917 ORTHO05D005104 1.8e-32 143.3 152 55.3
ATR0776G085 Amborella trichopoda HOM05D003917 ORTHO05D005104 1.5e-31 140.2 120 59.2
Duzib093G1533 Durio zibethinus HOM05D003917 ORTHO05D005104 1.5e-31 140.2 145 53.8
Duzib093G1470 Durio zibethinus HOM05D003917 ORTHO05D005104 5.7e-31 138.3 145 53.1
ATR0794G030 Amborella trichopoda HOM05D003917 ORTHO05D005104 3.7e-30 135.6 109 59.6
Glyma.02G291100 Glycine max HOM05D003917 ORTHO05D005104 2.0e-28 129.8 141 51.8
ATR0794G138 Amborella trichopoda HOM05D003917 ORTHO05D005104 5.9e-28 128.3 95 64.2
BraA01t03527Z Brassica rapa HOM05D003917 ORTHO05D005104 1.3e-27 127.1 100 62.0
BcaC01g01693 Brassica carinata HOM05D003917 ORTHO05D005104 9.4e-26 120.9 93 64.5
BcaC05g28324 Brassica carinata HOM05D000399 ORTHO05D000304 2.1e-25 119.8 80 71.2
Phvul.008G266800 Phaseolus vulgaris HOM05D003917 ORTHO05D005104 4.4e-23 112.1 132 50.0
FAN16G0676 Fragaria x ananassa HOM05D003917 ORTHO05D005104 7.0e-21 104.8 66 75.8
Gorai.002G088600 Gossypium raimondii HOM05D003917 ORTHO05D005104 4.5e-20 102.1 66 75.8
Gohir.D01G066600 Gossypium hirsutum HOM05D003917 ORTHO05D005104 1.7e-19 100.1 66 74.2
FAN16G0616 Fragaria x ananassa HOM05D003917 ORTHO05D005104 1.9e-18 96.7 108 51.9
Oeu042771.1 Olea europaea HOM05D003917 ORTHO05D005104 4.2e-18 95.5 118 50.8
C01p43720 Brassica napus HOM05D003917 ORTHO05D005104 6.1e-17 91.7 74 59.5
BolC1t04330H Brassica oleracea HOM05D003917 ORTHO05D005104 8.0e-17 91.3 74 59.5
Pp3s32_520 Physcomitrium patens HOM05D003917 ORTHO05D309786 5.7e-15 85.1 128 40.6
AUR62016539 Chenopodium quinoa HOM05D003917 ORTHO05D024981 3.7e-14 82.4 58 65.5
Oeu021198.1 Olea europaea HOM05D003917 ORTHO05D005104 3.7e-14 82.4 45 82.2
AUR62006502 Chenopodium quinoa HOM05D003917 ORTHO05D024981 6.3e-14 81.6 61 62.3
SGA_v2.0_scaffold31G12886 Striga asiatica HOM05D003917 ORTHO05D024981 1.8e-13 80.1 58 63.8
SGA_v2.0_scaffold698G53480 Striga asiatica HOM05D003917 ORTHO05D024981 4.1e-13 79.0 58 62.1
CBR_g3731 Chara braunii HOM05D003917 ORTHO05D028724 7.7e-12 74.7 73 47.9
BcaC05g26491 Brassica carinata HOM05D003917 ORTHO05D001048 9.4e-10 67.8 38 78.9
C05p25410 Brassica napus HOM05D003917 ORTHO05D001048 8.0e-09 64.7 59 57.6
BolC6t38526H Brassica oleracea HOM05D003917 ORTHO05D001048 6.8e-08 61.6 59 55.9
BolC6t39957H Brassica oleracea HOM05D003917 ORTHO05D001048 6.8e-08 61.6 62 51.6
Aa31LG8G10060 Aethionema arabicum HOM05D002406 ORTHO05D007964 1.7e-06 57.0 60 50.0


User provided reference genes

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