Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGSC0003DMG400021653 Solanum tuberosum HOM05D005745 ORTHO05D006857 2.4e-248 861.7 430 100.0
Sopen05g028140 Solanum pennellii HOM05D005745 ORTHO05D006857 1.4e-232 809.3 430 94.0
Solyc05g048810.4 Solanum lycopersicum HOM05D005745 ORTHO05D006857 7.8e-231 803.5 430 93.5
CAN.G1535.1 Capsicum annuum HOM05D005745 ORTHO05D006857 3.0e-222 775.0 430 89.3
Peaxi162Scf00191g01322 Petunia axillaris HOM05D005745 ORTHO05D006857 7.1e-208 727.2 428 85.0
Nitab4.5_0007346g0010 Nicotiana tabacum HOM05D005745 ORTHO05D006857 3.4e-202 708.4 447 81.4
Nitab4.5_0002262g0010 Nicotiana tabacum HOM05D005745 ORTHO05D006857 1.0e-169 600.5 430 74.9
Hma1.2p1_0001F.1_g001520 Hydrangea macrophylla HOM05D005745 ORTHO05D006857 2.8e-143 512.7 418 63.2
SGA_v2.0_scaffold277G46666 Striga asiatica HOM05D005745 ORTHO05D006857 5.4e-139 498.4 440 60.2
QL08p049437 Quercus lobata HOM05D005745 ORTHO05D006857 2.3e-137 493.0 416 62.0
CSS0024424 Camellia sinensis var. sinensis HOM05D005745 ORTHO05D006857 8.6e-137 491.1 424 60.6
Actinidia20926 Actinidia chinensis HOM05D005745 ORTHO05D006857 7.3e-136 488.0 416 61.1
CSS0038489 Camellia sinensis var. sinensis HOM05D005745 ORTHO05D006857 1.2e-135 487.3 424 60.4
Dinv43791 Davidia involucrata HOM05D005745 ORTHO05D006857 2.1e-135 486.5 418 61.7
GSVIVG01026870001 Vitis vinifera HOM05D005745 ORTHO05D006857 3.6e-135 485.7 447 58.2
Cc02_g37770 Coffea canephora HOM05D005745 ORTHO05D006857 8.0e-135 484.6 413 61.3
TAR367G0002 Trochodendron aralioides HOM05D005745 ORTHO05D006857 1.5e-133 480.3 419 60.4
Actinidia10034 Actinidia chinensis HOM05D005745 ORTHO05D006857 5.8e-133 478.4 420 60.2
MSTRG.17255 Avicennia marina HOM05D005745 ORTHO05D006857 1.4e-131 473.8 443 56.2
Lsat_1_v5_gn_7_5060 Lactuca sativa HOM05D005745 ORTHO05D006857 9.2e-131 471.1 416 61.3
MD01G1055100 Malus domestica HOM05D005745 ORTHO05D006857 4.6e-130 468.8 429 59.0
DCAR_015932 Daucus carota HOM05D005745 ORTHO05D006857 3.0e-129 466.1 409 58.7
Nn6g33496 Nelumbo nucifera HOM05D005745 ORTHO05D006857 6.6e-129 464.9 414 60.9
Manes.01G259400 Manihot esculenta HOM05D005745 ORTHO05D006857 1.1e-128 464.2 417 57.8
Sabra14G0059300 Salix brachista HOM05D005745 ORTHO05D006857 4.3e-128 462.2 428 57.9
ECA236G3051 Erigeron canadensis HOM05D005745 ORTHO05D006857 6.2e-127 458.4 411 58.9
FAN06G1549 Fragaria x ananassa HOM05D005745 ORTHO05D006857 8.1e-127 458.0 423 56.3
Gohir.D12G109300 Gossypium hirsutum HOM05D005745 ORTHO05D006857 8.9e-126 454.5 412 58.7
FAN10G4182 Fragaria x ananassa HOM05D005745 ORTHO05D006857 2.0e-125 453.4 412 57.8
Oeu056358.1 Olea europaea HOM05D005745 ORTHO05D006857 2.0e-125 453.4 384 62.2
TWI23G0914 Tripterygium wilfordii HOM05D005745 ORTHO05D006857 5.8e-125 451.8 447 54.6
CANSAT56G0536 Cannabis sativa HOM05D005745 ORTHO05D006857 7.5e-125 451.4 437 56.5
Cpa.g.sc18.234 Carica papaya HOM05D005745 ORTHO05D006857 1.3e-124 450.7 420 57.4
Gohir.A12G105400 Gossypium hirsutum HOM05D005745 ORTHO05D006857 6.4e-124 448.4 412 57.5
vmacro13297 Vaccinium macrocarpon HOM05D005745 ORTHO05D006857 8.3e-124 448.0 432 58.3
Gorai.008G118400 Gossypium raimondii HOM05D005745 ORTHO05D006857 1.1e-123 447.6 412 58.5
Ciclev10020429m.g Citrus clementina HOM05D005745 ORTHO05D006857 1.4e-123 447.2 405 59.3
arahy.Tifrunner.gnm1.ann1.5YG8M2 Arachis hypogaea HOM05D005745 ORTHO05D006857 9.2e-123 444.5 418 57.4
CiPaw.02G029400 Carya illinoinensis HOM05D005745 ORTHO05D006857 1.6e-122 443.7 412 58.3
Lj7C516G5 Lonicera japonica HOM05D005745 ORTHO05D006857 1.3e-121 440.7 360 63.9
Rhsim07G0017300 Rhododendron simsii HOM05D000683 ORTHO05D000507 3.0e-121 439.5 401 59.6
arahy.Tifrunner.gnm1.ann1.JLYP5G Arachis hypogaea HOM05D005745 ORTHO05D006857 5.1e-121 438.7 418 56.9
EL10Ac1g00543 Beta vulgaris HOM05D005745 ORTHO05D006857 1.5e-120 437.2 410 56.6
Cfa003949 Carpinus fangiana HOM05D000683 ORTHO05D000507 1.5e-120 437.2 385 59.2
AUR62033312 Chenopodium quinoa HOM05D005745 ORTHO05D006857 1.9e-120 436.8 408 57.1
VMungo0331G1900 Vigna mungo HOM05D005745 ORTHO05D006857 1.9e-120 436.8 421 56.1
Lalb_Chr04g0256771 Lupinus albus HOM05D005745 ORTHO05D006857 4.3e-120 435.6 412 57.0
AUR62033347 Chenopodium quinoa HOM05D005745 ORTHO05D006857 1.2e-119 434.1 407 56.3
Lj3g0021692 Lotus japonicus HOM05D005745 ORTHO05D006857 1.6e-119 433.7 418 55.3
CsaV3_6G000430 Cucumis sativus L. HOM05D005745 ORTHO05D006857 2.1e-119 433.3 418 55.7
BcaB03g13612 Brassica carinata HOM05D005745 ORTHO05D006857 1.1e-118 431.0 408 56.6
A10p00280 Brassica napus HOM05D005745 ORTHO05D006857 1.1e-118 431.0 408 55.4
PGR042G0923 Punica granatum HOM05D005745 ORTHO05D006857 2.4e-118 429.9 412 57.3
Aqoxy7G00357 Aquilegia oxysepala HOM05D005745 ORTHO05D006857 1.5e-117 427.2 417 55.9
BraA10t42305Z Brassica rapa HOM05D005745 ORTHO05D006857 2.0e-117 426.8 428 54.9
Haze_15472 Corylus avellana HOM05D005745 ORTHO05D006857 4.4e-117 425.6 413 55.7
PSO782G5186 Papaver somniferum HOM05D005745 ORTHO05D006857 4.4e-117 425.6 433 51.3
Eucgr.E00173 Eucalyptus grandis HOM05D005745 ORTHO05D006857 5.8e-117 425.2 444 53.6
BolC5t28819H Brassica oleracea HOM05D005745 ORTHO05D006857 1.3e-116 424.1 418 54.3
Eucgr.E00169 Eucalyptus grandis HOM05D005745 ORTHO05D006857 1.7e-116 423.7 445 54.4
Hund27291 Selenicereus undatus HOM05D005745 ORTHO05D006857 1.7e-116 423.7 425 54.6
CARHR000560 Cardamine hirsuta HOM05D005745 ORTHO05D006857 2.2e-116 423.3 412 54.6
CiPaw.02G029100 Carya illinoinensis HOM05D005745 ORTHO05D006857 2.9e-116 422.9 415 56.1
AL1G10580 Arabidopsis lyrata HOM05D005745 ORTHO05D006857 3.8e-116 422.5 417 54.7
Medtr8g031440 Medicago truncatula HOM05D005745 ORTHO05D006857 1.1e-115 421.0 408 54.7
Sc26g0000960 Simmondsia chinensis HOM05D005745 ORTHO05D006857 1.1e-115 421.0 415 55.2
Thhalv10007725m.g Eutrema salsugineum HOM05D005745 ORTHO05D006857 2.4e-115 419.9 421 54.4
PSO478G4474 Papaver somniferum HOM05D005745 ORTHO05D006857 7.1e-115 418.3 433 50.8
Potri.014G081400 Populus trichocarpa HOM05D005745 ORTHO05D006857 7.8e-114 414.8 362 59.7
C05p00290 Brassica napus HOM05D005745 ORTHO05D006857 1.7e-113 413.7 433 51.7
Carub.0001s0045 Capsella rubella HOM05D005745 ORTHO05D006857 1.7e-113 413.7 410 54.6
HanXRQChr04g0121611 Helianthus annuus HOM05D005745 ORTHO05D006857 3.0e-113 412.9 351 63.5
Aa31LG1G11130 Aethionema arabicum HOM05D005745 ORTHO05D006857 8.7e-113 411.4 440 52.0
Sp1g00540 Schrenkiella parvula HOM05D005745 ORTHO05D006857 9.6e-112 407.9 410 54.4
AUR62004330 Chenopodium quinoa HOM05D005745 ORTHO05D006857 8.1e-111 404.8 413 52.8
Duzib138G1514 Durio zibethinus HOM05D005745 ORTHO05D006857 1.1e-110 404.4 352 59.4
Lalb_Chr10g0097191 Lupinus albus HOM05D005745 ORTHO05D006857 3.1e-110 402.9 416 53.1
ClCG06G003860 Citrullus lanatus HOM05D005745 ORTHO05D006857 7.6e-109 398.3 484 47.9
AT1G01760 Arabidopsis thaliana HOM05D005745 ORTHO05D006857 1.4e-107 394.0 388 55.2
THA.LOC104817020 Tarenaya hassleriana HOM05D005745 ORTHO05D006857 7.1e-107 391.7 393 52.9
RcHm_v2.0_Chr1g0354081 Rosa chinensis HOM05D005745 ORTHO05D006857 4.8e-103 379.0 452 49.6
Ca_23656_v3 Cicer arietinum L. HOM05D005745 ORTHO05D006857 3.4e-101 372.9 373 52.8
Sed0009525 Sechium edule HOM05D005745 ORTHO05D006857 5.8e-101 372.1 357 56.6
FAN03G1898 Fragaria x ananassa HOM05D005745 ORTHO05D006857 1.4e-99 367.5 414 49.8
MBI17_g21972_MAGBIO Magnolia biondii HOM05D005745 ORTHO05D006857 9.3e-99 364.8 381 53.8
Prupe.2G164800 Prunus persica HOM05D005745 ORTHO05D006857 4.6e-98 362.5 335 57.6
CiPaw.02G029200 Carya illinoinensis HOM05D005745 ORTHO05D006857 7.9e-98 361.7 351 55.8
Gohir.A12G105450 Gossypium hirsutum HOM05D005745 ORTHO05D006857 1.0e-97 361.3 347 55.6
Ah.05g176680 Amaranthus hybridus HOM05D005745 ORTHO05D006857 6.7e-97 358.6 395 52.2
FvH4_7g13861 Fragaria vesca HOM05D005745 ORTHO05D006857 2.9e-92 343.2 336 54.5
HPP92_001499 Vanilla planifolia HOM05D005745 ORTHO05D006857 1.1e-91 341.3 382 50.0
MBI18_g01486_MAGBIO Magnolia biondii HOM05D005745 ORTHO05D006857 6.7e-89 332.0 395 49.9
CDE06G1611 Ceratophyllum demersum HOM05D005745 ORTHO05D006857 1.7e-84 317.4 429 44.3
Zm00001eb067600 Zea mays HOM05D005745 ORTHO05D006857 1.9e-83 313.9 427 45.4
MELO3C021221.2 Cucumis melo HOM05D005745 ORTHO05D006857 4.3e-80 302.8 394 47.7
Glyma.07G073300 Glycine max HOM05D005745 ORTHO05D006857 2.8e-79 300.1 312 52.2
Psat4g154320 Pisum sativum HOM05D005745 ORTHO05D006857 2.0e-77 293.9 274 54.7
Mapoly0023s0060 Marchantia polymorpha HOM05D005745 ORTHO05D006857 1.1e-75 288.1 515 36.9
Phvul.010G096200 Phaseolus vulgaris HOM05D005745 ORTHO05D006857 2.7e-74 283.5 274 54.4
TPR.G39633 Trifolium pratense HOM05D005745 ORTHO05D006857 4.6e-74 282.7 215 63.3
Atru.BG.56.p Acer truncatum HOM05D005745 ORTHO05D006857 1.8e-70 270.8 346 46.8
FAN06G0933 Fragaria x ananassa HOM05D005745 ORTHO05D006857 3.8e-68 263.1 293 49.8
Pp3c4_14060 Physcomitrium patens HOM05D005745 ORTHO05D006857 5.0e-68 262.7 512 35.5
Os04g0683500 Oryza sativa ssp. japonica HOM05D005745 ORTHO05D006857 1.5e-61 241.1 328 44.5
AUR62003100 Chenopodium quinoa HOM05D005745 ORTHO05D006857 5.9e-61 239.2 196 62.2
AagrBONN_evm.TU.Sc2ySwM_362.160 Anthoceros agrestis HOM05D005745 ORTHO05D006857 2.2e-60 237.3 440 36.1
AUR62034353 Chenopodium quinoa HOM05D005745 ORTHO05D006857 3.2e-59 233.4 187 62.0
ATR0594G105 Amborella trichopoda HOM05D005745 ORTHO05D006857 5.5e-59 232.6 219 55.7
unitig_26.g9734 Utricularia gibba HOM05D005745 ORTHO05D006857 9.4e-59 231.9 382 40.3
Glyma.03G013600 Glycine max HOM05D005745 ORTHO05D006857 6.1e-58 229.2 275 48.0
Zm00001eb420790 Zea mays HOM05D005745 ORTHO05D006857 1.0e-57 228.4 320 43.4
Prupe.2G165000 Prunus persica HOM05D005745 ORTHO05D006857 5.2e-57 226.1 425 37.9
Thecc.01G362500 Theobroma cacao HOM05D005745 ORTHO05D006857 1.5e-56 224.6 234 54.7
MD07G1140200 Malus domestica HOM05D005745 ORTHO05D006857 3.8e-52 209.9 305 45.2
SHI13462 Sapria himalayana HOM05D005745 ORTHO05D006857 5.0e-52 209.5 426 37.3
Oeu056357.1 Olea europaea HOM05D005745 ORTHO05D006857 4.1e-46 189.9 166 60.2
Zm00001eb191880 Zea mays HOM05D009386 ORTHO05D006857 5.4e-46 189.5 206 50.0
SEGI_32011 Sequoiadendron giganteum HOM05D005745 ORTHO05D006857 1.0e-41 175.3 196 49.5
SMO266G0032 Selaginella moellendorffii HOM05D005745 ORTHO05D006857 5.7e-40 169.5 276 40.6
TPR.G4413 Trifolium pratense HOM05D005745 ORTHO05D006857 3.1e-38 163.7 165 54.5
MCO02G004 Micromonas commoda HOM05D005745 ORTHO05D006857 6.6e-36 156.0 420 32.9
Prupe.2G164500 Prunus persica HOM05D005745 ORTHO05D006857 1.5e-32 144.8 155 52.3
AUR62034238 Chenopodium quinoa HOM05D002177 ORTHO05D002257 2.2e-31 141.0 110 60.9
SEGI_32349 Sequoiadendron giganteum HOM05D005745 ORTHO05D006857 1.4e-30 138.3 411 27.7
AUR62019766 Chenopodium quinoa HOM05D005745 ORTHO05D006857 3.2e-30 137.1 108 59.3
PRCOL_00000230 Prasinoderma coloniale HOM05D005745 ORTHO05D006857 4.1e-30 136.7 424 30.0
Zm00001eb442120 Zea mays HOM05D009386 ORTHO05D006857 2.0e-29 134.4 125 55.2
Oeu056356.1 Olea europaea HOM05D005745 ORTHO05D006857 2.9e-28 130.6 94 71.3
CBR_g12518 Chara braunii HOM05D004914 ORTHO05D006512 1.9e-27 127.9 792 22.6
Atru.chr5.475 Acer truncatum HOM05D005745 ORTHO05D006857 5.6e-27 126.3 88 65.9
Glyma.03G013550 Glycine max HOM05D005745 ORTHO05D006857 1.6e-26 124.8 111 59.5
EL10Ac7g17708 Beta vulgaris HOM05D005745 ORTHO05D006857 6.8e-25 119.4 91 65.9
COL.COLO4_12683 Corchorus olitorius HOM05D000683 ORTHO05D000507 4.4e-24 116.7 135 48.9
FAN01G0854 Fragaria x ananassa HOM05D005745 ORTHO05D006857 3.5e-21 107.1 141 46.1
Cre14.g629283 Chlamydomonas reinhardtii HOM05D005745 ORTHO05D006857 2.3e-17 94.4 111 46.8
MCO14G396 Micromonas commoda HOM05D005745 ORTHO05D006857 9.2e-14 82.4 310 27.4
MCO15G493 Micromonas commoda HOM05D005745 ORTHO05D006857 3.0e-12 77.4 289 27.3
PRCOL_00001873 Prasinoderma coloniale HOM05D005745 ORTHO05D006857 1.1e-11 75.5 270 27.8
MD07G1140100 Malus domestica HOM05D005745 ORTHO05D006857 1.4e-06 58.5 64 50.0
ATR0594G209 Amborella trichopoda HOM05D005745 ORTHO05D006857 3.2e-06 57.4 49 61.2


User provided reference genes

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