Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGSC0003DMG400020713 Solanum tuberosum HOM05D005817 ORTHO05D007140 1.2e-164 583.2 300 100.0
Solyc01g103020.4 Solanum lycopersicum HOM05D005817 ORTHO05D007140 1.2e-161 573.2 300 98.3
CAN.G855.54 Capsicum annuum HOM05D005817 ORTHO05D007140 1.7e-152 542.7 297 92.6
Nitab4.5_0007689g0010 Nicotiana tabacum HOM05D005817 ORTHO05D007140 8.1e-150 533.9 301 90.7
Sopen01g045430 Solanum pennellii HOM05D005817 ORTHO05D007140 1.3e-126 456.8 234 98.7
Cc02_g23610 Coffea canephora HOM05D005817 ORTHO05D007140 3.8e-123 445.3 303 76.2
Peaxi162Scf00011g01920 Petunia axillaris HOM05D005817 ORTHO05D007140 1.1e-122 443.7 340 70.3
Hma1.2p1_0052F.1_g030020 Hydrangea macrophylla HOM05D005817 ORTHO05D007140 2.3e-120 436.0 300 75.7
Oeu028475.1 Olea europaea HOM05D005817 ORTHO05D007140 7.4e-119 431.0 299 74.2
Actinidia01635 Actinidia chinensis HOM05D005817 ORTHO05D007140 1.6e-118 429.9 298 76.2
Oeu028476.1 Olea europaea HOM05D005817 ORTHO05D007140 2.8e-118 429.1 299 73.9
Ca_13529_v3 Cicer arietinum L. HOM05D005817 ORTHO05D007140 6.2e-118 427.9 298 73.8
CiPaw.06G176700 Carya illinoinensis HOM05D005817 ORTHO05D007140 1.8e-117 426.4 296 75.0
Nitab4.5_0003247g0070 Nicotiana tabacum HOM05D005817 ORTHO05D007140 1.8e-117 426.4 246 90.2
CSS0044256 Camellia sinensis var. sinensis HOM05D005817 ORTHO05D007140 2.4e-117 426.0 306 73.5
CANSAT01G0715 Cannabis sativa HOM05D005817 ORTHO05D007140 2.4e-117 426.0 302 74.8
QL02p103359 Quercus lobata HOM05D005817 ORTHO05D007140 5.3e-117 424.9 297 74.4
CsaV3_5G027420 Cucumis sativus L. HOM05D005817 ORTHO05D007140 9.0e-117 424.1 300 74.0
TAR376G0556 Trochodendron aralioides HOM05D005817 ORTHO05D007140 5.8e-116 421.4 302 74.2
Prupe.1G585700 Prunus persica HOM05D005817 ORTHO05D007140 7.6e-116 421.0 299 72.2
Psat4g000960 Pisum sativum HOM05D005817 ORTHO05D007140 2.9e-115 419.1 300 72.3
Thecc.06G019900 Theobroma cacao HOM05D005817 ORTHO05D007140 4.9e-115 418.3 301 75.1
Ciclev10002025m.g Citrus clementina HOM05D005817 ORTHO05D007140 8.4e-115 417.5 301 75.1
Phvul.003G075900 Phaseolus vulgaris HOM05D005817 ORTHO05D007140 8.4e-115 417.5 303 73.3
Gohir.D06G122800 Gossypium hirsutum HOM05D005817 ORTHO05D007140 2.5e-114 416.0 301 74.8
MD08G1248300 Malus domestica HOM05D005817 ORTHO05D007140 3.2e-114 415.6 299 70.9
Atru.chr6.226 Acer truncatum HOM05D005817 ORTHO05D007140 4.2e-114 415.2 301 73.8
TAR628G1209 Trochodendron aralioides HOM05D005817 ORTHO05D007140 4.2e-114 415.2 300 73.7
SGA_v2.0_scaffold8G04460 Striga asiatica HOM05D005817 ORTHO05D007140 5.5e-114 414.8 300 72.7
Eucgr.I02797 Eucalyptus grandis HOM05D005817 ORTHO05D007140 7.1e-114 414.5 303 71.6
Gorai.010G142900 Gossypium raimondii HOM05D005817 ORTHO05D007140 7.1e-114 414.5 301 74.4
Lalb_Chr07g0176811 Lupinus albus HOM05D005817 ORTHO05D007140 7.1e-114 414.5 298 72.1
Nn5g27184 Nelumbo nucifera HOM05D005817 ORTHO05D007140 9.3e-114 414.1 302 73.5
arahy.Tifrunner.gnm1.ann1.86KQ48 Arachis hypogaea HOM05D005817 ORTHO05D007140 1.2e-113 413.7 319 69.3
RcHm_v2.0_Chr7g0219661 Rosa chinensis HOM05D005817 ORTHO05D007140 1.6e-113 413.3 299 71.6
Duzib160G0844 Durio zibethinus HOM05D005817 ORTHO05D007140 2.7e-113 412.5 301 74.4
Gohir.A06G115800 Gossypium hirsutum HOM05D005817 ORTHO05D007140 3.5e-113 412.1 301 74.4
arahy.Tifrunner.gnm1.ann1.NEQE4P Arachis hypogaea HOM05D005817 ORTHO05D007140 4.6e-113 411.8 319 69.0
Lj4g0018327 Lotus japonicus HOM05D005817 ORTHO05D007140 4.6e-113 411.8 300 72.3
Lsat_1_v5_gn_9_83341 Lactuca sativa HOM05D005817 ORTHO05D007140 3.9e-112 408.7 305 72.1
MD15G1443200 Malus domestica HOM05D005817 ORTHO05D007140 6.7e-112 407.9 307 69.1
FvH4_5g27830 Fragaria vesca HOM05D005817 ORTHO05D007140 1.1e-111 407.1 300 69.7
TWI14G0757 Tripterygium wilfordii HOM05D005817 ORTHO05D007140 1.5e-111 406.8 297 72.1
FAN18G1253 Fragaria x ananassa HOM05D005817 ORTHO05D007140 1.9e-111 406.4 300 69.7
Migut.N00865 Erythranthe guttata HOM05D005817 ORTHO05D007140 4.3e-111 405.2 299 70.6
HanXRQChr15g0469671 Helianthus annuus HOM05D005817 ORTHO05D007140 4.3e-111 405.2 304 72.0
PGR142G3472 Punica granatum HOM05D005817 ORTHO05D007140 5.7e-111 404.8 301 70.8
TPR.G6004 Trifolium pratense HOM05D005817 ORTHO05D007140 7.4e-111 404.4 301 70.8
Sp2g13800 Schrenkiella parvula HOM05D005817 ORTHO05D007140 1.6e-110 403.3 306 71.9
Sed0006174 Sechium edule HOM05D005817 ORTHO05D007140 1.6e-110 403.3 301 71.8
PSO017G5300 Papaver somniferum HOM05D005817 ORTHO05D007140 2.1e-110 402.9 302 71.2
Glyma.07G272500 Glycine max HOM05D005817 ORTHO05D007140 2.8e-110 402.5 299 71.6
THA.LOC104824089 Tarenaya hassleriana HOM05D005817 ORTHO05D007140 3.7e-110 402.1 297 73.4
Medtr4g134630 Medicago truncatula HOM05D005817 ORTHO05D007140 4.8e-110 401.7 293 70.6
Aqoxy6G00025 Aquilegia oxysepala HOM05D005817 ORTHO05D007140 1.4e-109 400.2 301 70.8
PSO170G5162 Papaver somniferum HOM05D005817 ORTHO05D007140 1.4e-109 400.2 302 70.5
CDE07G1199 Ceratophyllum demersum HOM05D005817 ORTHO05D007140 2.4e-109 399.4 303 71.6
COL.COLO4_31118 Corchorus olitorius HOM05D005817 ORTHO05D007140 5.3e-109 398.3 336 67.3
Carub.0005s0157 Capsella rubella HOM05D005817 ORTHO05D007140 6.9e-109 397.9 304 71.4
AT2G02570 Arabidopsis thaliana HOM05D005817 ORTHO05D007140 1.5e-108 396.7 299 70.6
ATR1089G128 Amborella trichopoda HOM05D005817 ORTHO05D007140 2.0e-108 396.4 302 70.2
EL10Ac6g13990 Beta vulgaris HOM05D005817 ORTHO05D007140 2.6e-108 396.0 301 70.1
Thhalv10004677m.g Eutrema salsugineum HOM05D005817 ORTHO05D007140 7.6e-108 394.4 310 70.0
Rhsim05G0115500 Rhododendron simsii HOM05D005817 ORTHO05D007140 3.8e-107 392.1 353 62.9
Ah.03g136770 Amaranthus hybridus HOM05D005817 ORTHO05D007140 6.5e-107 391.3 320 66.6
BcaC06g31224 Brassica carinata HOM05D005817 ORTHO05D007140 2.5e-106 389.4 301 72.1
Haze_09983 Corylus avellana HOM05D005817 ORTHO05D007140 2.5e-106 389.4 361 59.6
C07p33290 Brassica napus HOM05D005817 ORTHO05D007140 2.1e-105 386.3 301 70.1
BolC7t43840H Brassica oleracea HOM05D005817 ORTHO05D007140 2.1e-105 386.3 301 70.1
Lj9C259G5 Lonicera japonica HOM05D001465 ORTHO05D001434 6.1e-105 384.8 282 73.0
A06p43560 Brassica napus HOM05D005817 ORTHO05D007140 3.0e-104 382.5 301 69.8
Hund15375 Selenicereus undatus HOM05D005817 ORTHO05D007140 5.1e-104 381.7 269 74.0
Sabra01G0174300 Salix brachista HOM05D005817 ORTHO05D007140 8.7e-104 380.9 318 66.7
BcaC03g17157 Brassica carinata HOM05D005817 ORTHO05D007140 9.7e-103 377.5 296 68.6
FAN04G1604 Fragaria x ananassa HOM05D005817 ORTHO05D007140 2.2e-102 376.3 368 56.8
BraA06t27241Z Brassica rapa HOM05D005817 ORTHO05D007140 8.2e-102 374.4 327 64.8
vmacro19830 Vaccinium macrocarpon HOM05D005817 ORTHO05D007140 4.1e-101 372.1 282 69.9
Dinv29679 Davidia involucrata HOM05D005817 ORTHO05D007140 5.3e-101 371.7 256 76.6
ECA236G3641 Erigeron canadensis HOM05D000284 ORTHO05D000805 3.8e-99 365.5 277 72.6
AUR62043876 Chenopodium quinoa HOM05D005817 ORTHO05D007140 2.7e-97 359.4 275 71.6
C02p50820 Brassica napus HOM05D005817 ORTHO05D007140 3.6e-97 359.0 296 67.9
ClCG11G000310 Citrullus lanatus HOM05D005817 ORTHO05D007140 3.0e-96 355.9 312 64.7
Aa31LG2G7570 Aethionema arabicum HOM05D005817 ORTHO05D007140 5.1e-96 355.1 323 61.3
CDE08G0344 Ceratophyllum demersum HOM05D005817 ORTHO05D007140 6.7e-96 354.8 299 65.2
BolC2t11164H Brassica oleracea HOM05D005817 ORTHO05D007140 1.5e-95 353.6 299 66.6
unitig_22.g6849 Utricularia gibba HOM05D005817 ORTHO05D007140 9.7e-95 350.9 332 59.0
GSVIVG01023145001 Vitis vinifera HOM05D005817 ORTHO05D007140 3.7e-94 349.0 256 72.3
FAN08G2336 Fragaria x ananassa HOM05D005817 ORTHO05D007140 2.4e-93 346.3 369 54.7
Glyma.17G001900 Glycine max HOM05D005817 ORTHO05D007140 2.4e-93 346.3 253 71.1
AL5G11840 Arabidopsis lyrata HOM05D005817 ORTHO05D007140 4.1e-93 345.5 260 70.8
MBI06_g16620_MAGBIO Magnolia biondii HOM05D005817 ORTHO05D007140 7.7e-92 341.3 260 69.6
Manes.10G106400 Manihot esculenta HOM05D005817 ORTHO05D007140 5.0e-91 338.6 255 72.2
Manes.07G030600 Manihot esculenta HOM05D005817 ORTHO05D007140 1.9e-90 336.7 253 70.8
Potri.004G229200 Populus trichocarpa HOM05D005817 ORTHO05D007140 9.4e-90 334.3 253 70.0
Actinidia26194 Actinidia chinensis HOM05D005817 ORTHO05D007140 6.7e-88 328.2 309 61.8
Mapoly0107s0026 Marchantia polymorpha HOM05D005817 ORTHO05D007140 6.7e-88 328.2 299 60.2
SHI04993 Sapria himalayana HOM05D005817 ORTHO05D007140 1.7e-86 323.6 321 56.7
VMungo1215G1434 Vigna mungo HOM05D005817 ORTHO05D007140 1.7e-86 323.6 205 77.6
AUR62032450 Chenopodium quinoa HOM05D005817 ORTHO05D007140 3.7e-86 322.4 281 63.7
Sc03g0006230 Simmondsia chinensis HOM05D005817 ORTHO05D007140 7.0e-85 318.2 212 74.5
A02p33050 Brassica napus HOM05D005817 ORTHO05D007140 1.2e-84 317.4 257 68.1
Lj5C284T7 Lonicera japonica HOM05D005817 ORTHO05D007140 5.9e-84 315.1 207 76.3
HPP92_002041 Vanilla planifolia HOM05D005817 ORTHO05D007140 7.2e-82 308.1 256 65.6
CDE04G1950 Ceratophyllum demersum HOM05D005817 ORTHO05D007140 9.4e-82 307.8 252 67.9
Os08g0109900 Oryza sativa ssp. japonica HOM05D005817 ORTHO05D007140 9.4e-82 307.8 253 66.0
Duzib235G1547 Durio zibethinus HOM05D005817 ORTHO05D007140 3.6e-81 305.8 247 70.9
Pp3c10_3580 Physcomitrium patens HOM05D005817 ORTHO05D007140 4.4e-79 298.9 325 53.5
Hma1.2p1_0052F.1_g030010 Hydrangea macrophylla HOM05D005817 ORTHO05D007140 1.7e-78 297.0 184 81.0
Aqoxy385s001 Aquilegia oxysepala HOM05D005817 ORTHO05D007140 2.8e-78 296.2 301 58.8
AagrBONN_evm.TU.Sc2ySwM_117.207 Anthoceros agrestis HOM05D005817 ORTHO05D007140 9.1e-77 291.2 289 55.0
MSTRG.27880 Avicennia marina HOM05D005817 ORTHO05D007140 9.1e-77 291.2 224 69.2
BraA02t08326Z Brassica rapa HOM05D005817 ORTHO05D007140 5.9e-76 288.5 272 61.0
Cpa.g.sc173.14 Carica papaya HOM05D005817 ORTHO05D007140 2.9e-75 286.2 242 65.7
CDE02G1227 Ceratophyllum demersum HOM05D005817 ORTHO05D007140 2.2e-70 270.0 298 53.4
Pp3c14_9240 Physcomitrium patens HOM05D005817 ORTHO05D007140 3.7e-70 269.2 290 54.1
SMO117G0163 Selaginella moellendorffii HOM05D005817 ORTHO05D007140 3.5e-68 262.7 199 67.3
Pp3c10_3582 Physcomitrium patens HOM05D005817 ORTHO05D007140 2.9e-67 259.6 226 60.6
Lalb_Chr12g0195861 Lupinus albus HOM05D005817 ORTHO05D007140 5.5e-66 255.4 165 77.0
CBR_g40810 Chara braunii HOM05D005817 ORTHO05D007140 3.4e-63 246.1 351 45.6
MSTRG.601 Avicennia marina HOM05D005817 ORTHO05D007140 4.4e-63 245.7 202 65.8
Pp3c1_22040 Physcomitrium patens HOM05D005817 ORTHO05D007140 6.3e-62 241.9 274 52.6
RcHm_v2.0_Chr5g0068831 Rosa chinensis HOM05D005817 ORTHO05D007140 7.0e-61 238.4 156 76.9
Dinv29634 Davidia involucrata HOM05D005817 ORTHO05D007140 1.4e-53 214.2 154 72.7
Zm00001eb174130 Zea mays HOM05D005817 ORTHO05D007140 9.5e-50 201.4 130 79.2
VMungo0766G0001 Vigna mungo HOM05D005817 ORTHO05D007140 3.8e-30 136.3 122 63.1
Cre02.g106550 Chlamydomonas reinhardtii HOM05D005817 ORTHO05D007140 1.6e-28 131.0 331 34.1
MCO12G229 Micromonas commoda HOM05D005817 ORTHO05D007140 1.6e-25 120.9 299 30.4
VMungo1148G0001 Vigna mungo HOM05D005817 ORTHO05D007140 3.0e-19 100.1 86 68.6
PRCOL_00002712 Prasinoderma coloniale HOM05D005817 ORTHO05D007140 2.5e-18 97.1 329 29.2
SEGI_07435 Sequoiadendron giganteum HOM05D005817 ORTHO05D007140 7.6e-15 85.5 86 53.5
FvH4_3g40414 Fragaria vesca HOM05D005817 ORTHO05D007140 1.3e-11 74.7 71 59.2
Thhalv10005196m.g Eutrema salsugineum HOM05D005817 ORTHO05D007140 3.3e-10 70.1 52 69.2
CARHR145100 Cardamine hirsuta HOM05D005817 ORTHO05D007140 5.3e-08 62.8 70 54.3
Lalb_Chr12g0195851 Lupinus albus HOM05D005817 ORTHO05D007140 5.3e-08 62.8 52 59.6


User provided reference genes

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