Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGSC0003DMG400015924 Solanum tuberosum HOM05D006642 ORTHO05D008856 1.2e-173 614.0 573 100.0
Sopen07g023170 Solanum pennellii HOM05D006642 ORTHO05D008856 4.6e-162 575.5 574 96.9
Solyc07g043600.4 Solanum lycopersicum HOM05D006642 ORTHO05D008856 2.5e-160 569.7 577 96.2
CAN.G819.5 Capsicum annuum HOM05D006642 ORTHO05D008856 2.2e-143 513.5 557 93.4
Nitab4.5_0001843g0110 Nicotiana tabacum HOM05D006642 ORTHO05D008856 1.2e-133 481.1 561 86.8
Nitab4.5_0007665g0020 Nicotiana tabacum HOM05D006642 ORTHO05D008856 2.1e-130 470.3 555 87.0
MSTRG.6613 Avicennia marina HOM05D006642 ORTHO05D008856 6.1e-114 415.6 332 80.4
CSS0001521 Camellia sinensis var. sinensis HOM05D006642 ORTHO05D008856 8.0e-114 415.2 332 80.1
CSS0049788 Camellia sinensis var. sinensis HOM05D006642 ORTHO05D008856 8.0e-114 415.2 332 80.1
Cc05_g00360 Coffea canephora HOM05D006642 ORTHO05D008856 7.5e-112 408.7 336 79.5
Dinv09723 Davidia involucrata HOM05D006642 ORTHO05D008856 3.7e-111 406.4 331 81.3
SGA_v2.0_scaffold73G24452 Striga asiatica HOM05D006642 ORTHO05D008856 3.5e-109 399.8 331 77.0
Oeu051395.1 Olea europaea HOM05D006642 ORTHO05D008856 7.7e-109 398.7 304 85.2
TAR624G0481 Trochodendron aralioides HOM05D006642 ORTHO05D008856 2.3e-108 397.1 322 81.1
Ciclev10014674m.g Citrus clementina HOM05D006642 ORTHO05D008856 1.1e-107 394.8 331 77.6
CANSAT64G1219 Cannabis sativa HOM05D006642 ORTHO05D008856 7.2e-107 392.1 331 77.0
Hma1.2p1_0073F.1_g038540 Hydrangea macrophylla HOM05D006642 ORTHO05D008856 2.1e-106 390.6 304 83.2
Manes.09G006600 Manihot esculenta HOM05D006642 ORTHO05D008856 2.3e-105 387.1 331 76.1
DCAR_023000 Daucus carota HOM05D006642 ORTHO05D008856 3.0e-105 386.7 309 81.2
MD09G1145700 Malus domestica HOM05D006642 ORTHO05D008856 3.0e-105 386.7 331 74.9
Nn4g26621 Nelumbo nucifera HOM05D006642 ORTHO05D008856 6.8e-105 385.6 320 79.1
Aqoxy5G04293 Aquilegia oxysepala HOM05D006642 ORTHO05D008856 2.0e-104 384.0 322 78.3
vmacro19989 Vaccinium macrocarpon HOM05D006642 ORTHO05D008856 7.5e-104 382.1 330 76.4
Actinidia39996 Actinidia chinensis HOM05D006642 ORTHO05D008856 2.8e-103 380.2 332 74.7
Migut.M00108 Erythranthe guttata HOM05D006642 ORTHO05D008856 2.8e-103 380.2 331 61.9
TWI23G0590 Tripterygium wilfordii HOM05D006642 ORTHO05D008856 6.3e-103 379.0 307 80.8
Atru.chr6.2750 Acer truncatum HOM05D006642 ORTHO05D008856 8.3e-103 378.6 331 77.9
Sed0004539 Sechium edule HOM05D006642 ORTHO05D008856 8.3e-103 378.6 332 75.0
Cfa023538 Carpinus fangiana HOM05D006642 ORTHO05D008856 1.1e-102 378.3 331 75.2
Prupe.3G180100 Prunus persica HOM05D006642 ORTHO05D008856 1.1e-102 378.3 331 75.5
HanXRQChr01g0029361 Helianthus annuus HOM05D006642 ORTHO05D008856 1.8e-102 377.5 322 77.6
Potri.001G220300 Populus trichocarpa HOM05D006642 ORTHO05D008856 2.4e-102 377.1 329 76.6
MBI02_g40097_MAGBIO Magnolia biondii HOM05D006642 ORTHO05D008856 2.0e-101 374.0 321 78.2
Sc14g0005210 Simmondsia chinensis HOM05D006642 ORTHO05D008856 2.7e-101 373.6 332 76.5
PGR142G3441 Punica granatum HOM05D006642 ORTHO05D008856 4.5e-101 372.9 331 74.9
unitig_899.g15288 Utricularia gibba HOM05D006642 ORTHO05D008856 4.5e-101 372.9 345 73.0
Lsat_1_v5_gn_1_49160 Lactuca sativa HOM05D006642 ORTHO05D008856 1.9e-99 367.5 307 71.7
ECA248G0755 Erigeron canadensis HOM05D006642 ORTHO05D008856 2.5e-99 367.1 322 76.1
Eucgr.K01239 Eucalyptus grandis HOM05D006642 ORTHO05D008856 4.3e-99 366.3 331 73.7
Sabra16G0124100 Salix brachista HOM05D006642 ORTHO05D008856 7.3e-99 365.5 309 78.0
ATR1098G151 Amborella trichopoda HOM05D006642 ORTHO05D008856 1.8e-97 360.9 321 75.1
CDE05G1065 Ceratophyllum demersum HOM05D006642 ORTHO05D008856 8.9e-97 358.6 324 76.2
Os08g0191900 Oryza sativa ssp. japonica HOM05D006642 ORTHO05D008856 8.9e-97 358.6 325 74.5
Phvul.007G015300 Phaseolus vulgaris HOM05D006642 ORTHO05D008856 1.2e-96 358.2 303 77.9
VMungo0720G2195 Vigna mungo HOM05D000164 ORTHO05D000096 2.6e-96 357.1 303 77.6
arahy.Tifrunner.gnm1.ann1.T7AVMG Arachis hypogaea HOM05D006642 ORTHO05D008856 4.4e-96 356.3 303 76.9
Thecc.01G164600 Theobroma cacao HOM05D006642 ORTHO05D008856 1.3e-95 354.8 295 78.6
Glyma.10G285200 Glycine max HOM05D006642 ORTHO05D008856 1.7e-95 354.4 304 77.0
Sp5g03940 Schrenkiella parvula HOM05D006642 ORTHO05D008856 2.2e-95 354.0 332 73.5
Glyma.20G103800 Glycine max HOM05D006642 ORTHO05D008856 2.9e-95 353.6 303 77.9
COL.COLO4_29911 Corchorus olitorius HOM05D006642 ORTHO05D008856 3.7e-95 353.2 295 79.7
Lj5g0013784 Lotus japonicus HOM05D006642 ORTHO05D008856 3.7e-95 353.2 299 77.9
Thhalv10005856m.g Eutrema salsugineum HOM05D006642 ORTHO05D008856 4.9e-95 352.8 332 73.5
Duzib147G0394 Durio zibethinus HOM05D006642 ORTHO05D008856 1.4e-94 351.3 296 71.6
Hund08483 Selenicereus undatus HOM05D006642 ORTHO05D008856 1.9e-94 350.9 331 72.8
GSVIVG01020809001 Vitis vinifera HOM05D006642 ORTHO05D008856 2.4e-94 350.5 301 78.7
RcHm_v2.0_Chr2g0152561 Rosa chinensis HOM05D006642 ORTHO05D008856 3.2e-94 350.1 331 71.6
HPP92_011054 Vanilla planifolia HOM05D006642 ORTHO05D008856 3.2e-94 350.1 302 76.5
Zm00001eb413390 Zea mays HOM05D006642 ORTHO05D008856 4.1e-94 349.7 325 72.0
Gorai.012G039700 Gossypium raimondii HOM05D006642 ORTHO05D008856 7.0e-94 349.0 295 79.0
Aa31LG10G13530 Aethionema arabicum HOM05D006642 ORTHO05D008856 1.2e-93 348.2 332 72.9
Gohir.A05G380400 Gossypium hirsutum HOM05D006642 ORTHO05D008856 1.2e-93 348.2 295 79.0
PSO675G5462 Papaver somniferum HOM05D006642 ORTHO05D008856 2.0e-93 347.4 321 73.8
Gohir.D04G035200 Gossypium hirsutum HOM05D006642 ORTHO05D008856 2.7e-93 347.1 295 78.6
AUR62002293 Chenopodium quinoa HOM05D006642 ORTHO05D008856 3.5e-93 346.7 321 75.1
CARHR169450 Cardamine hirsuta HOM05D006642 ORTHO05D008856 4.6e-93 346.3 332 72.6
Medtr1g114300 Medicago truncatula HOM05D006642 ORTHO05D008856 6.0e-93 345.9 304 75.3
Ca_11227_v3 Cicer arietinum L. HOM05D006642 ORTHO05D008856 7.8e-93 345.5 303 75.9
ClCG11G016650 Citrullus lanatus HOM05D006642 ORTHO05D008856 1.0e-92 345.1 331 71.0
THA.LOC104802288 Tarenaya hassleriana HOM05D006642 ORTHO05D008856 1.3e-92 344.7 340 72.1
Carub.0005s2580 Capsella rubella HOM05D006642 ORTHO05D008856 1.7e-92 344.4 332 72.3
AT3G59040 Arabidopsis thaliana HOM05D006642 ORTHO05D008856 8.6e-92 342.0 332 72.3
Ah.07g201920 Amaranthus hybridus HOM05D006642 ORTHO05D008856 1.5e-91 341.3 303 76.9
Lalb_Chr06g0163881 Lupinus albus HOM05D006642 ORTHO05D008856 1.5e-91 341.3 311 74.3
Psat6g233520 Pisum sativum HOM05D006642 ORTHO05D008856 1.9e-91 340.9 303 74.3
AUR62015397 Chenopodium quinoa HOM05D006642 ORTHO05D008856 3.3e-91 340.1 328 58.5
PSO541G5267 Papaver somniferum HOM05D006642 ORTHO05D008856 3.3e-91 340.1 320 73.1
CsaV3_4G032160 Cucumis sativus L. HOM05D006642 ORTHO05D008856 5.6e-91 339.3 331 69.5
FAN02G0564 Fragaria x ananassa HOM05D006642 ORTHO05D008856 1.6e-90 337.8 331 70.4
Ah.07g198470 Amaranthus hybridus HOM05D006642 ORTHO05D008856 8.0e-90 335.5 303 59.1
EL10Ac8g19571 Beta vulgaris HOM05D006642 ORTHO05D008856 1.4e-89 334.7 336 71.4
FAN05G5081 Fragaria x ananassa HOM05D006642 ORTHO05D008856 1.4e-89 334.7 331 70.1
FAN14G1916 Fragaria x ananassa HOM05D006642 ORTHO05D008856 2.3e-89 334.0 331 70.1
FvH4_6g38970 Fragaria vesca HOM05D006642 ORTHO05D008856 6.8e-89 332.4 331 69.8
TPR.G4069 Trifolium pratense HOM05D006642 ORTHO05D008856 2.2e-87 327.4 303 71.6
C08p34230 Brassica napus HOM05D006642 ORTHO05D008856 1.9e-83 314.3 332 69.3
A09p51470 Brassica napus HOM05D006642 ORTHO05D008856 3.3e-83 313.5 333 69.7
BcaC07g40235 Brassica carinata HOM05D006642 ORTHO05D008856 8.1e-82 308.9 333 68.8
BolC8t51020H Brassica oleracea HOM05D006642 ORTHO05D008856 1.5e-80 304.7 317 70.0
BraA09t40583Z Brassica rapa HOM05D006642 ORTHO05D008856 2.6e-80 303.9 333 68.5
Rhsim05G0172300 Rhododendron simsii HOM05D006642 ORTHO05D008856 2.6e-80 303.9 307 70.0
BcaC07g40308 Brassica carinata HOM05D006642 ORTHO05D008856 3.0e-76 290.4 292 72.6
QL02p091883 Quercus lobata HOM05D006642 ORTHO05D008856 3.1e-73 280.4 332 64.5
MD17G1132200 Malus domestica HOM05D006642 ORTHO05D008856 4.2e-70 270.0 291 65.6
QL93p2017_0027 Quercus lobata HOM05D006642 ORTHO05D008856 1.0e-68 265.4 291 68.0
Cpa.g.sc50.124 Carica papaya HOM05D006642 ORTHO05D008856 3.9e-68 263.5 307 49.8
MELO3C026387.2 Cucumis melo HOM05D006642 ORTHO05D008856 1.1e-67 261.9 320 62.2
Lj1A585G41 Lonicera japonica HOM05D006642 ORTHO05D008856 5.6e-67 259.6 178 74.2
Haze_13626 Corylus avellana HOM05D006642 ORTHO05D008856 1.5e-59 235.0 211 81.5
Nn4g26620 Nelumbo nucifera HOM05D006642 ORTHO05D008856 6.2e-58 229.6 134 80.6
HPP92_011074 Vanilla planifolia HOM05D006642 ORTHO05D008856 3.0e-52 210.7 146 69.9
EL10Ac5g11659 Beta vulgaris HOM05D006642 ORTHO05D008856 6.7e-52 209.5 165 64.8
AL5G40920 Arabidopsis lyrata HOM05D006642 ORTHO05D008856 2.2e-47 194.5 196 79.1
CiPaw.03G197600 Carya illinoinensis HOM05D006642 ORTHO05D008856 1.5e-40 171.8 103 80.6
EL10Ac5g11660 Beta vulgaris HOM05D006642 ORTHO05D008856 5.5e-38 163.3 103 80.6
FAN09G4833 Fragaria x ananassa HOM05D006642 ORTHO05D008856 9.7e-35 152.5 120 64.2
Mapoly0047s0104 Marchantia polymorpha HOM05D006642 ORTHO05D008856 1.5e-32 145.2 261 51.3
Pp3c26_11100 Physcomitrium patens HOM05D006642 ORTHO05D008856 3.8e-31 140.6 320 43.4
SMO259G0047 Selaginella moellendorffii HOM05D006642 ORTHO05D008856 1.8e-28 131.7 266 45.1
C06p25860 Brassica napus HOM05D000461 ORTHO05D001840 8.8e-28 129.4 304 33.2
BcaC08g44955 Brassica carinata HOM05D006642 ORTHO05D008856 6.9e-25 119.8 82 72.0
BcaB02g07487 Brassica carinata HOM05D000461 ORTHO05D001840 1.6e-21 108.6 81 67.9
BcaB02g07488 Brassica carinata HOM05D006642 ORTHO05D008856 5.1e-20 103.6 74 68.9
BolC6t37747H Brassica oleracea HOM05D006642 ORTHO05D032904 7.0e-17 93.2 93 54.8
BcaC08g44954 Brassica carinata HOM05D006642 ORTHO05D032904 4.4e-11 73.9 77 53.2
VMungo1215G1169 Vigna mungo HOM05D007173 ORTHO05D009151 7.7e-08 63.2 103 33.0
Lj5g0013792 Lotus japonicus HOM05D006642 ORTHO05D008856 2.2e-07 61.6 48 60.4
Lj1A585G40 Lonicera japonica HOM05D006642 ORTHO05D027104 3.8e-07 60.8 31 96.8
Ca_27070_v3 Cicer arietinum L. HOM05D002503 ORTHO05D009151 1.9e-06 58.5 103 27.2
MBI02_g40094_MAGBIO Magnolia biondii HOM05D006642 ORTHO05D027104 2.5e-06 58.2 31 93.5


User provided reference genes

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