Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGSC0003DMG400015053 Solanum tuberosum HOM05D005856 ORTHO05D007264 6.0e-272 940.3 484 100.0
Solyc05g015310.3 Solanum lycopersicum HOM05D005856 ORTHO05D007264 1.1e-262 909.4 488 95.7
Sopen05g010580 Solanum pennellii HOM05D005856 ORTHO05D007264 1.8e-260 902.1 488 95.1
CAN.G43.18 Capsicum annuum HOM05D005856 ORTHO05D007264 6.7e-255 883.6 488 92.4
Nitab4.5_0000379g0010 Nicotiana tabacum HOM05D005856 ORTHO05D007264 7.2e-241 837.0 490 87.3
Nitab4.5_0000367g0010 Nicotiana tabacum HOM05D005856 ORTHO05D007264 4.4e-238 827.8 490 86.5
Peaxi162Scf00128g01130 Petunia axillaris HOM05D005856 ORTHO05D007264 8.0e-224 780.4 480 82.7
CSS0025471 Camellia sinensis var. sinensis HOM05D005856 ORTHO05D007264 1.4e-196 689.9 502 72.3
Manes.13G018400 Manihot esculenta HOM05D005856 ORTHO05D007264 1.8e-191 672.9 504 70.0
Oeu036879.1 Olea europaea HOM05D005856 ORTHO05D007264 3.4e-190 668.7 474 71.5
Actinidia20701 Actinidia chinensis HOM05D005856 ORTHO05D007264 9.9e-190 667.2 494 70.2
CSS0003803 Camellia sinensis var. sinensis HOM05D005856 ORTHO05D007264 9.9e-190 667.2 542 65.7
SalBow1G2377 Salvia bowleyana HOM05D005856 ORTHO05D007264 1.4e-188 663.3 493 70.6
Eucgr.H04651 Eucalyptus grandis HOM05D005856 ORTHO05D007264 2.7e-187 659.1 493 70.4
ClCG08G010110 Citrullus lanatus HOM05D005856 ORTHO05D007264 6.6e-186 654.4 508 67.3
PGR119G1218 Punica granatum HOM05D005856 ORTHO05D007264 2.5e-185 652.5 493 69.4
MELO3C011452.2 Cucumis melo HOM05D005856 ORTHO05D007264 1.2e-184 650.2 509 67.6
CsaV3_6G032280 Cucumis sativus L. HOM05D005856 ORTHO05D007264 2.8e-184 649.0 509 67.8
Sed0007662 Sechium edule HOM05D005856 ORTHO05D007264 1.4e-183 646.7 508 66.3
Prupe.1G228400 Prunus persica HOM05D005856 ORTHO05D007264 6.8e-183 644.4 498 67.7
CANSAT01G0688 Cannabis sativa HOM05D005856 ORTHO05D007264 1.5e-182 643.3 436 75.7
COL.COLO4_20381 Corchorus olitorius HOM05D005856 ORTHO05D007264 1.5e-182 643.3 495 67.7
Psat5g095080 Pisum sativum HOM05D005856 ORTHO05D007264 1.5e-182 643.3 485 69.3
Duzib248G0543 Durio zibethinus HOM05D005856 ORTHO05D007264 2.6e-182 642.5 497 67.6
MD13G1117100 Malus domestica HOM05D005856 ORTHO05D007264 6.4e-181 637.9 458 71.2
Rhsim12G0099000 Rhododendron simsii HOM05D005856 ORTHO05D007264 7.1e-180 634.4 495 67.9
arahy.Tifrunner.gnm1.ann1.E9QWSH Arachis hypogaea HOM05D005856 ORTHO05D007264 2.1e-179 632.9 504 66.3
Ciclev10031347m.g Citrus clementina HOM05D005856 ORTHO05D007264 2.7e-179 632.5 469 69.7
QL03p053723 Quercus lobata HOM05D005856 ORTHO05D007264 2.7e-179 632.5 435 71.3
Thecc.02G210800 Theobroma cacao HOM05D005856 ORTHO05D007264 4.6e-179 631.7 497 66.8
SGA_v2.0_scaffold135G34936 Striga asiatica HOM05D005856 ORTHO05D007264 7.8e-179 630.9 493 68.0
arahy.Tifrunner.gnm1.ann1.ID6EX5 Arachis hypogaea HOM05D005856 ORTHO05D007264 1.3e-178 630.2 504 66.9
Gohir.A04G139000 Gossypium hirsutum HOM05D005856 ORTHO05D007264 3.9e-178 628.6 491 67.2
Potri.006G025300 Populus trichocarpa HOM05D005856 ORTHO05D007264 1.5e-177 626.7 484 67.8
Glyma.18G007700 Glycine max HOM05D005856 ORTHO05D007264 3.3e-177 625.5 485 68.5
TPR.G28278 Trifolium pratense HOM05D005856 ORTHO05D007264 3.3e-177 625.5 482 66.0
Medtr3g085550 Medicago truncatula HOM05D005856 ORTHO05D007264 5.6e-177 624.8 482 66.4
Atru.chr11.2307 Acer truncatum HOM05D005856 ORTHO05D007264 7.3e-177 624.4 492 66.5
THA.LOC104807593 Tarenaya hassleriana HOM05D005856 ORTHO05D007264 1.2e-176 623.6 507 66.5
ECA233G1277 Erigeron canadensis HOM05D005856 ORTHO05D007264 6.2e-176 621.3 477 67.7
Cfa009330 Carpinus fangiana HOM05D005856 ORTHO05D007264 1.1e-175 620.5 467 69.2
Sc04g0010050 Simmondsia chinensis HOM05D005856 ORTHO05D007264 1.1e-175 620.5 460 70.2
Gorai.012G175300 Gossypium raimondii HOM05D005856 ORTHO05D007264 3.1e-175 619.0 507 65.1
Lalb_Chr11g0075741 Lupinus albus HOM05D005856 ORTHO05D007264 1.5e-174 616.7 508 66.5
Glyma.11G249500 Glycine max HOM05D005856 ORTHO05D007264 3.4e-174 615.5 479 67.6
Lj3A1066G66 Lonicera japonica HOM05D005856 ORTHO05D007264 4.9e-173 611.7 409 75.8
AT1G67440 Arabidopsis thaliana HOM05D005856 ORTHO05D007264 1.4e-172 610.1 466 65.9
Aa31sc1092G20 Aethionema arabicum HOM05D005856 ORTHO05D007264 1.9e-172 609.8 501 63.3
Haze_12395 Corylus avellana HOM05D005856 ORTHO05D007264 7.1e-172 607.8 468 67.5
Lsat_1_v5_gn_8_149340 Lactuca sativa HOM05D005856 ORTHO05D007264 9.3e-172 607.4 457 70.2
DCAR_031194 Daucus carota HOM05D005856 ORTHO05D007264 2.7e-171 605.9 454 67.8
Carub.0002s1377 Capsella rubella HOM05D005856 ORTHO05D007264 7.8e-171 604.4 460 66.3
AL2G26010 Arabidopsis lyrata HOM05D005856 ORTHO05D007264 1.0e-170 604.0 461 66.6
FAN07G1943 Fragaria x ananassa HOM05D005856 ORTHO05D007264 1.0e-170 604.0 472 67.8
TAR622G1129 Trochodendron aralioides HOM05D005856 ORTHO05D007264 1.0e-170 604.0 478 67.4
Aqoxy5G03410 Aquilegia oxysepala HOM05D005856 ORTHO05D007264 1.7e-170 603.2 450 70.7
Lj3g0022861 Lotus japonicus HOM05D005856 ORTHO05D007264 2.3e-170 602.8 488 65.6
CARHR059980 Cardamine hirsuta HOM05D005856 ORTHO05D007264 3.0e-170 602.4 462 66.2
Hund06082 Selenicereus undatus HOM05D005856 ORTHO05D007264 5.1e-170 601.7 507 64.5
FvH4_4g23940 Fragaria vesca HOM05D005856 ORTHO05D007264 1.1e-169 600.5 472 67.2
Sabra06G0018600 Salix brachista HOM05D005856 ORTHO05D007264 1.5e-169 600.1 517 63.1
BcaB03g15198 Brassica carinata HOM05D005856 ORTHO05D007264 2.5e-169 599.4 458 66.6
TWI36G0309 Tripterygium wilfordii HOM05D005856 ORTHO05D007264 1.3e-168 597.0 465 67.1
FAN17G0012 Fragaria x ananassa HOM05D005856 ORTHO05D007264 2.1e-168 596.3 472 66.7
FAN22G0691 Fragaria x ananassa HOM05D005856 ORTHO05D007264 6.2e-168 594.7 472 67.2
VMungo1383G1560 Vigna mungo HOM05D005856 ORTHO05D007264 8.1e-168 594.3 484 66.7
BcaC08g46160 Brassica carinata HOM05D005856 ORTHO05D007264 1.1e-167 594.0 459 66.0
Phvul.001G260800 Phaseolus vulgaris HOM05D005856 ORTHO05D007264 1.4e-167 593.6 484 65.3
Thhalv10019531m.g Eutrema salsugineum HOM05D005856 ORTHO05D007264 9.0e-167 590.9 434 68.9
RcHm_v2.0_Chr4g0430601 Rosa chinensis HOM05D005856 ORTHO05D007264 1.2e-166 590.5 470 67.2
Sp5g22410 Schrenkiella parvula HOM05D005856 ORTHO05D007264 1.5e-166 590.1 437 68.2
A07p34000 Brassica napus HOM05D005856 ORTHO05D007264 7.6e-166 587.8 459 65.6
BraA07t31027Z Brassica rapa HOM05D005856 ORTHO05D007264 7.6e-166 587.8 459 65.6
Cpa.g.sc351.3 Carica papaya HOM05D005856 ORTHO05D007264 1.7e-165 586.6 460 66.7
unitig_88.g27631 Utricularia gibba HOM05D005856 ORTHO05D007264 1.1e-164 583.9 507 61.5
CiPaw.05G111700 Carya illinoinensis HOM05D005856 ORTHO05D007264 3.2e-164 582.4 396 75.3
Potri.016G023500 Populus trichocarpa HOM05D005856 ORTHO05D007264 5.4e-164 581.6 440 68.6
Nn4g22353 Nelumbo nucifera HOM05D005856 ORTHO05D007264 3.5e-163 578.9 439 68.8
HanXRQChr08g0207721 Helianthus annuus HOM05D005856 ORTHO05D007264 4.6e-163 578.6 444 67.6
EL10Ac6g13483 Beta vulgaris HOM05D005856 ORTHO05D007264 1.8e-162 576.6 413 71.2
PSO782G2456 Papaver somniferum HOM05D005856 ORTHO05D007264 8.7e-162 574.3 437 67.0
Migut.H00051 Erythranthe guttata HOM05D005856 ORTHO05D007264 1.6e-160 570.1 476 64.1
AUR62005603 Chenopodium quinoa HOM05D005856 ORTHO05D007264 2.6e-158 562.8 542 58.9
GSVIVG01010446001 Vitis vinifera HOM05D005856 ORTHO05D007264 8.4e-157 557.8 366 77.3
C06p42840 Brassica napus HOM05D005856 ORTHO05D007264 2.1e-152 543.1 459 61.7
BolC6t39153H Brassica oleracea HOM05D005856 ORTHO05D007264 1.1e-151 540.8 459 61.4
ATR0561G073 Amborella trichopoda HOM05D005856 ORTHO05D007264 1.4e-151 540.4 544 56.1
CDE05G3252 Ceratophyllum demersum HOM05D005856 ORTHO05D007264 5.8e-150 535.0 419 66.8
AUR62024126 Chenopodium quinoa HOM05D005856 ORTHO05D007264 6.5e-149 531.6 406 68.2
Manes.12G012850 Manihot esculenta HOM05D005856 ORTHO05D007264 4.2e-148 528.9 407 67.8
Dinv14826 Davidia involucrata HOM05D005856 ORTHO05D007264 1.5e-142 510.4 370 71.9
AL2G26030 Arabidopsis lyrata HOM05D005856 ORTHO05D007264 1.1e-140 504.2 446 59.4
Gohir.D04G181900 Gossypium hirsutum HOM05D005856 ORTHO05D007264 7.9e-139 498.0 492 58.1
Sp5g22430 Schrenkiella parvula HOM05D005856 ORTHO05D007264 8.8e-138 494.6 446 57.8
Os04g0381600 Oryza sativa ssp. japonica HOM05D005856 ORTHO05D007264 1.7e-136 490.3 386 62.4
PSO063G1304 Papaver somniferum HOM05D005856 ORTHO05D007264 3.1e-135 486.1 437 60.0
SEGI_12163 Sequoiadendron giganteum HOM05D005856 ORTHO05D007264 4.1e-135 485.7 346 68.8
HPP92_024239 Vanilla planifolia HOM05D005856 ORTHO05D007264 5.5e-132 475.3 418 58.6
Ca_16469_v3 Cicer arietinum L. HOM05D005856 ORTHO05D007264 4.1e-127 459.1 361 66.5
Cc11_g00900 Coffea canephora HOM05D005856 ORTHO05D007264 1.5e-126 457.2 306 73.2
Zm00001eb420890 Zea mays HOM05D005856 ORTHO05D007264 8.8e-122 441.4 355 62.5
Thhalv10019423m.g Eutrema salsugineum HOM05D005856 ORTHO05D007264 1.8e-114 417.2 338 62.1
Pp3c14_19540 Physcomitrium patens HOM05D005856 ORTHO05D007264 1.2e-113 414.5 446 50.9
HPP92_013615 Vanilla planifolia HOM05D005856 ORTHO05D007264 9.7e-113 411.4 362 59.9
Mapoly0076s0016 Marchantia polymorpha HOM05D005856 ORTHO05D007264 1.4e-111 407.5 500 47.6
CARHR068030 Cardamine hirsuta HOM05D005856 ORTHO05D007264 2.1e-107 393.7 436 50.9
SMO236G0063 Selaginella moellendorffii HOM05D005856 ORTHO05D007264 1.5e-105 387.5 379 54.4
AagrBONN_evm.TU.Sc2ySwM_344.2476 Anthoceros agrestis HOM05D005856 ORTHO05D007264 5.7e-105 385.6 396 52.5
Actinidia26816 Actinidia chinensis HOM05D005856 ORTHO05D007264 8.6e-101 371.7 271 69.4
CBR_g49528 Chara braunii HOM05D005856 ORTHO05D007264 6.8e-98 362.1 379 49.9
Ah.03g136240 Amaranthus hybridus HOM05D005856 ORTHO05D007264 1.3e-96 357.8 361 60.1
FAN12G0203 Fragaria x ananassa HOM05D005856 ORTHO05D007264 4.5e-94 349.4 237 71.7
Carub.0002s1379 Capsella rubella HOM05D005856 ORTHO05D007264 8.3e-88 328.6 434 43.3
AUR62005602 Chenopodium quinoa HOM05D005856 ORTHO05D007264 4.1e-79 299.7 331 51.7
AT1G67460 Arabidopsis thaliana HOM05D005856 ORTHO05D007264 6.0e-78 295.8 270 57.8
MCO13G068 Micromonas commoda HOM05D005856 ORTHO05D007264 1.9e-71 274.2 352 46.3
ECA240G4225 Erigeron canadensis HOM05D005856 ORTHO05D007264 3.3e-60 236.9 303 47.5
PRCOL_00004669 Prasinoderma coloniale HOM05D005856 ORTHO05D007264 4.4e-57 226.5 288 42.4
Cre10.g436600 Chlamydomonas reinhardtii HOM05D005856 ORTHO05D007264 1.3e-51 208.4 438 31.1
MD07G1133300 Malus domestica HOM05D005856 ORTHO05D007264 2.8e-35 154.1 118 69.5
Cfa005743 Carpinus fangiana HOM05D005856 ORTHO05D007264 7.9e-30 136.0 128 60.9
Medtr3g085580 Medicago truncatula HOM05D005856 ORTHO05D007264 1.3e-29 135.2 189 44.4
Haze_12396 Corylus avellana HOM05D005856 ORTHO05D007264 5.1e-29 133.3 115 60.0
SMO199G0052 Selaginella moellendorffii HOM05D005856 ORTHO05D007264 6.3e-27 126.3 222 37.8
Dinv17562 Davidia involucrata HOM05D005856 ORTHO05D015634 1.4e-23 115.2 64 78.1
Cc02_g32220 Coffea canephora HOM05D005856 ORTHO05D007264 7.9e-22 109.4 160 48.1
SMO199G0068 Selaginella moellendorffii HOM05D005856 ORTHO05D007264 3.0e-21 107.5 201 36.8
VMungo0464G1347 Vigna mungo HOM05D005856 ORTHO05D007264 7.4e-20 102.8 130 50.0
Migut.O00545 Erythranthe guttata HOM05D005856 ORTHO05D007264 1.1e-15 89.0 154 44.2
AL2G26330 Arabidopsis lyrata HOM05D001487 ORTHO05D001365 2.5e-15 87.8 67 59.7
SMO199G0090 Selaginella moellendorffii HOM05D005856 ORTHO05D007264 2.5e-15 87.8 88 51.1
SMO361G0803 Selaginella moellendorffii HOM05D005856 ORTHO05D007264 2.7e-14 84.3 96 44.8
SMO364G0554 Selaginella moellendorffii HOM05D005827 ORTHO05D005864 8.2e-11 72.8 276 26.1
SalBow4G2969 Salvia bowleyana HOM05D005856 ORTHO05D015634 1.8e-10 71.6 54 63.0
Psat5g095160 Pisum sativum HOM05D001167 ORTHO05D036681 1.3e-08 65.5 73 56.2
Rhsim10G0039300 Rhododendron simsii HOM05D005856 ORTHO05D007264 2.1e-06 58.2 81 50.6


User provided reference genes

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