Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGSC0003DMG400014388 Solanum tuberosum HOM05D003917 ORTHO05D005104 1.1e-96 356.7 188 100.0
Solyc10g006290.3 Solanum lycopersicum HOM05D003917 ORTHO05D005104 7.2e-96 354.0 188 98.9
Sopen10g002240 Solanum pennellii HOM05D003917 ORTHO05D005104 9.4e-96 353.6 188 97.9
Nitab4.5_0004829g0030 Nicotiana tabacum HOM05D003917 ORTHO05D005104 1.2e-79 300.1 205 81.5
CAN.G1781.2 Capsicum annuum HOM05D003917 ORTHO05D005104 1.6e-79 299.7 162 96.9
Hma1.2p1_0673F.1_g201365 Hydrangea macrophylla HOM05D003917 ORTHO05D005104 2.8e-76 288.9 192 79.7
Hma1.2p1_0673F.1_g201370 Hydrangea macrophylla HOM05D003917 ORTHO05D005104 2.8e-76 288.9 192 79.7
Peaxi162Scf00834g00044 Petunia axillaris HOM05D003917 ORTHO05D005104 2.4e-75 285.8 189 84.1
RhsimUnG0250500 Rhododendron simsii HOM05D003917 ORTHO05D005104 5.0e-73 278.1 191 79.1
SGA_v2.0_scaffold8G04319 Striga asiatica HOM05D003917 ORTHO05D005104 3.2e-72 275.4 191 80.6
GSVIVG01037650001 Vitis vinifera HOM05D003917 ORTHO05D005104 4.2e-72 275.0 190 77.4
Migut.H01827 Erythranthe guttata HOM05D003917 ORTHO05D005104 5.5e-72 274.6 189 79.9
CSS0021043 Camellia sinensis var. sinensis HOM05D003917 ORTHO05D005104 1.6e-71 273.1 190 78.4
MD03G1200800 Malus domestica HOM05D003917 ORTHO05D005104 4.7e-71 271.6 190 77.4
TAR626G1684 Trochodendron aralioides HOM05D003917 ORTHO05D005104 6.1e-71 271.2 189 77.8
Cc05_g13680 Coffea canephora HOM05D003917 ORTHO05D005104 1.0e-70 270.4 190 78.9
Sc16g0006040 Simmondsia chinensis HOM05D003917 ORTHO05D005104 2.3e-70 269.2 189 76.2
Nitab4.5_0001393g0140 Nicotiana tabacum HOM05D003917 ORTHO05D005104 8.8e-70 267.3 189 78.8
vmacro09714 Vaccinium macrocarpon HOM05D003917 ORTHO05D005104 1.2e-69 266.9 193 75.6
MSTRG.14435 Avicennia marina HOM05D003917 ORTHO05D005104 7.5e-69 264.2 189 77.2
MD11G1217800 Malus domestica HOM05D003917 ORTHO05D005104 1.7e-68 263.1 190 75.3
arahy.Tifrunner.gnm1.ann1.ZCST78 Arachis hypogaea HOM05D003917 ORTHO05D005104 2.2e-68 262.7 189 76.2
AUR62020441 Chenopodium quinoa HOM05D003917 ORTHO05D005104 2.2e-68 262.7 191 72.3
ECA240G3908 Erigeron canadensis HOM05D003917 ORTHO05D005104 2.2e-68 262.7 194 74.7
Prupe.4G213500 Prunus persica HOM05D003917 ORTHO05D005104 2.2e-68 262.7 191 75.4
EL10Ac4g07805 Beta vulgaris HOM05D003917 ORTHO05D005104 2.8e-68 262.3 188 74.5
Eucgr.L03176 Eucalyptus grandis HOM05D003917 ORTHO05D005104 4.8e-68 261.5 191 73.8
AUR62015777 Chenopodium quinoa HOM05D003917 ORTHO05D005104 6.3e-68 261.2 189 73.5
Hund01991 Selenicereus undatus HOM05D003917 ORTHO05D005104 6.3e-68 261.2 189 72.5
arahy.Tifrunner.gnm1.ann1.YBSA71 Arachis hypogaea HOM05D003917 ORTHO05D005104 1.1e-67 260.4 189 75.7
Eucgr.F00763 Eucalyptus grandis HOM05D003917 ORTHO05D005104 1.4e-67 260.0 191 73.3
CSS0032620 Camellia sinensis var. sinensis HOM05D003917 ORTHO05D005104 2.4e-67 259.2 190 73.2
Cfa020343 Carpinus fangiana HOM05D003917 ORTHO05D005104 2.4e-67 259.2 194 72.2
PGR083G1099 Punica granatum HOM05D003917 ORTHO05D005104 2.4e-67 259.2 189 73.5
Dinv22262 Davidia involucrata HOM05D006187 ORTHO05D007621 4.1e-67 258.5 173 78.6
Glyma.18G096900 Glycine max HOM05D003917 ORTHO05D005104 4.1e-67 258.5 189 74.1
ClCG10G005360 Citrullus lanatus HOM05D003917 ORTHO05D005104 7.0e-67 257.7 190 73.7
FvH4_3g22680 Fragaria vesca HOM05D003917 ORTHO05D005104 1.2e-66 256.9 190 73.2
FAN21G1759 Fragaria x ananassa HOM05D003917 ORTHO05D005104 1.2e-66 256.9 190 73.2
FAN25G1034 Fragaria x ananassa HOM05D003917 ORTHO05D005104 1.2e-66 256.9 190 73.2
CiPaw.12G129800 Carya illinoinensis HOM05D003917 ORTHO05D005104 1.6e-66 256.5 190 71.6
Ah.06g186000 Amaranthus hybridus HOM05D003917 ORTHO05D005104 2.7e-66 255.8 190 72.6
CANSAT01G2526 Cannabis sativa HOM05D003917 ORTHO05D005104 5.9e-66 254.6 192 74.0
CsaV3_3G005080 Cucumis sativus L. HOM05D003917 ORTHO05D005104 5.9e-66 254.6 190 72.6
Glyma.08G316200 Glycine max HOM05D003917 ORTHO05D005104 7.7e-66 254.2 183 74.9
DCAR_016705 Daucus carota HOM05D003917 ORTHO05D005104 1.0e-65 253.8 189 71.4
Lalb_Chr15g0081161 Lupinus albus HOM05D003917 ORTHO05D005104 1.0e-65 253.8 190 73.2
QL08p010140 Quercus lobata HOM05D003917 ORTHO05D005104 1.0e-65 253.8 187 71.1
HanXRQChr03g0076521 Helianthus annuus HOM05D003917 ORTHO05D005104 1.3e-65 253.4 193 72.5
MBI18_g14473_MAGBIO Magnolia biondii HOM05D003917 ORTHO05D005104 2.9e-65 252.3 194 70.6
Phvul.006G043400 Phaseolus vulgaris HOM05D003917 ORTHO05D005104 3.8e-65 251.9 183 74.3
PSO832G0061 Papaver somniferum HOM05D003917 ORTHO05D005104 6.5e-65 251.1 190 71.6
Ca_01713_v3 Cicer arietinum L. HOM05D003917 ORTHO05D005104 8.6e-65 250.8 183 73.8
RcHm_v2.0_Chr5g0039491 Rosa chinensis HOM05D003917 ORTHO05D005104 8.6e-65 250.8 189 72.5
VMungo0647G2080 Vigna mungo HOM05D003917 ORTHO05D005104 1.5e-64 250.0 180 72.8
Lsat_1_v5_gn_5_3940 Lactuca sativa HOM05D003917 ORTHO05D005104 2.5e-64 249.2 188 72.9
Medtr3g051740 Medicago truncatula HOM05D003917 ORTHO05D005104 2.5e-64 249.2 184 74.5
Gohir.D13G142900 Gossypium hirsutum HOM05D003917 ORTHO05D005104 5.5e-64 248.1 187 71.7
Aa31LG8G7200 Aethionema arabicum HOM05D003917 ORTHO05D005104 9.5e-64 247.3 191 73.3
Gohir.A13G138100 Gossypium hirsutum HOM05D003917 ORTHO05D005104 9.5e-64 247.3 187 71.7
Glyma.14G023600 Glycine max HOM05D003917 ORTHO05D005104 2.1e-63 246.1 180 72.2
Lj6g0025956 Lotus japonicus HOM05D003917 ORTHO05D005104 2.8e-63 245.7 184 72.8
Actinidia35344 Actinidia chinensis HOM05D006187 ORTHO05D007621 4.7e-63 245.0 170 75.9
MD11G1218500 Malus domestica HOM05D003917 ORTHO05D005104 4.7e-63 245.0 190 70.5
PSO210G5830 Papaver somniferum HOM05D003917 ORTHO05D005104 4.7e-63 245.0 190 70.0
Duzib213G0954 Durio zibethinus HOM05D003917 ORTHO05D005104 6.1e-63 244.6 187 71.1
Psat5g178840 Pisum sativum HOM05D003917 ORTHO05D005104 6.1e-63 244.6 184 71.2
Dinv40754 Davidia involucrata HOM05D003917 ORTHO05D005104 1.0e-62 243.8 185 69.2
Atru.chr2.3409 Acer truncatum HOM05D003917 ORTHO05D005104 1.4e-62 243.4 191 69.6
Carub.0003s2033 Capsella rubella HOM05D003917 ORTHO05D005104 2.3e-62 242.7 191 72.8
VMungo0540G1915 Vigna mungo HOM05D003917 ORTHO05D005104 2.3e-62 242.7 183 71.6
Lalb_Chr20g0113861 Lupinus albus HOM05D003917 ORTHO05D005104 5.2e-62 241.5 187 71.1
Thecc.07G036800 Theobroma cacao HOM05D003917 ORTHO05D005104 5.2e-62 241.5 187 69.5
Gorai.013G159800 Gossypium raimondii HOM05D003917 ORTHO05D005104 6.8e-62 241.1 194 69.1
A05p28510 Brassica napus HOM05D003917 ORTHO05D005104 1.2e-61 240.4 192 72.4
Thhalv10021595m.g Eutrema salsugineum HOM05D003917 ORTHO05D005104 2.0e-61 239.6 191 71.7
BcaC05g28323 Brassica carinata HOM05D003917 ORTHO05D005104 3.4e-61 238.8 192 71.9
C05p43960 Brassica napus HOM05D003917 ORTHO05D005104 3.4e-61 238.8 192 71.9
BolC5t33114H Brassica oleracea HOM05D003917 ORTHO05D005104 3.4e-61 238.8 192 71.9
Sp3g18400 Schrenkiella parvula HOM05D003917 ORTHO05D005104 3.4e-61 238.8 191 71.7
Sed0004226 Sechium edule HOM05D003917 ORTHO05D005104 3.4e-61 238.8 178 71.3
ECA246G4209 Erigeron canadensis HOM05D003917 ORTHO05D005104 4.4e-61 238.4 186 71.0
LjContig00272g0007438 Lotus japonicus HOM05D003917 ORTHO05D005104 4.4e-61 238.4 184 69.6
Nn1g03531 Nelumbo nucifera HOM05D003917 ORTHO05D005104 5.7e-61 238.0 228 61.0
AT3G20390 Arabidopsis thaliana HOM05D003917 ORTHO05D005104 9.8e-61 237.3 191 71.7
CARHR096100 Cardamine hirsuta HOM05D003917 ORTHO05D005104 1.3e-60 236.9 190 70.0
AL3G34100 Arabidopsis lyrata HOM05D003917 ORTHO05D005104 1.7e-60 236.5 191 71.7
BcaB06g26102 Brassica carinata HOM05D003917 ORTHO05D005104 1.7e-60 236.5 193 72.5
BcaB06g26104 Brassica carinata HOM05D003917 ORTHO05D005104 1.7e-60 236.5 193 72.5
HanXRQChr05g0159361 Helianthus annuus HOM05D003917 ORTHO05D005104 1.7e-60 236.5 188 70.2
COL.COLO4_09663 Corchorus olitorius HOM05D003917 ORTHO05D005104 2.8e-60 235.7 187 69.5
Manes.15G071800 Manihot esculenta HOM05D003917 ORTHO05D005104 3.7e-60 235.3 190 68.9
Medtr5g092740 Medicago truncatula HOM05D003917 ORTHO05D005104 9.2e-59 230.7 183 69.4
Psat2g010880 Pisum sativum HOM05D003917 ORTHO05D005104 9.2e-59 230.7 183 69.4
TWI39G1026 Tripterygium wilfordii HOM05D003917 ORTHO05D005104 1.2e-58 230.3 188 67.6
THA.LOC104816925 Tarenaya hassleriana HOM05D003917 ORTHO05D005104 2.0e-58 229.6 186 71.5
unitig_8.g3276 Utricularia gibba HOM05D003917 ORTHO05D005104 2.7e-58 229.2 188 67.0
unitig_22.g6623 Utricularia gibba HOM05D001290 ORTHO05D001180 3.5e-58 228.8 188 67.0
Os07g0516200 Oryza sativa ssp. japonica HOM05D003917 ORTHO05D005104 4.5e-58 228.4 188 70.7
HPP92_004132 Vanilla planifolia HOM05D003917 ORTHO05D005104 5.9e-58 228.0 194 65.5
Ciclev10009443m.g Citrus clementina HOM05D003917 ORTHO05D005104 1.3e-57 226.9 217 59.9
A03p41760 Brassica napus HOM05D003917 ORTHO05D005104 1.7e-57 226.5 156 77.6
C03p51140 Brassica napus HOM05D003917 ORTHO05D005104 1.7e-57 226.5 156 78.2
BraA03t13329Z Brassica rapa HOM05D003917 ORTHO05D005104 1.7e-57 226.5 156 77.6
Lalb_Chr17g0348491 Lupinus albus HOM05D003917 ORTHO05D005104 2.3e-57 226.1 178 70.2
BcaB04g19109 Brassica carinata HOM05D003917 ORTHO05D005104 5.0e-57 224.9 143 81.8
BcaC01g03555 Brassica carinata HOM05D003917 ORTHO05D005104 3.3e-56 222.2 159 76.7
Potri.011G139600 Populus trichocarpa HOM05D003917 ORTHO05D005104 3.3e-56 222.2 191 63.9
Oeu005531.1 Olea europaea HOM05D003917 ORTHO05D005104 5.6e-56 221.5 192 65.1
Potri.001G435700 Populus trichocarpa HOM05D003917 ORTHO05D005104 5.6e-56 221.5 191 63.9
TPR.G1217 Trifolium pratense HOM05D003917 ORTHO05D005104 5.6e-56 221.5 181 68.0
Zm00001eb322650 Zea mays HOM05D003917 ORTHO05D005104 1.6e-55 219.9 189 67.7
Duzib093G2089 Durio zibethinus HOM05D003917 ORTHO05D005104 3.6e-55 218.8 170 69.4
Aqoxy1G03502 Aquilegia oxysepala HOM05D003917 ORTHO05D005104 1.0e-54 217.2 187 65.8
CDE11G0283 Ceratophyllum demersum HOM05D000789 ORTHO05D005104 1.4e-54 216.9 193 63.2
Lj8C169T22 Lonicera japonica HOM05D003917 ORTHO05D005104 3.0e-54 215.7 201 61.2
Haze_09691 Corylus avellana HOM05D003917 ORTHO05D005104 6.8e-54 214.5 126 84.9
Lj1A872G53 Lonicera japonica HOM05D003917 ORTHO05D005104 8.9e-54 214.2 192 68.2
SMO144G0016 Selaginella moellendorffii HOM05D003917 ORTHO05D005104 4.4e-53 211.8 125 88.0
Sabra16G0289800 Salix brachista HOM05D003917 ORTHO05D005104 1.3e-52 210.3 219 56.6
QL08p010146 Quercus lobata HOM05D003917 ORTHO05D005104 1.7e-52 209.9 125 82.4
FAN11G2833 Fragaria x ananassa HOM05D003917 ORTHO05D005104 4.9e-52 208.4 159 71.7
Oeu007580.1 Olea europaea HOM05D003917 ORTHO05D005104 3.2e-51 205.7 125 84.0
Lsat_1_v5_gn_9_93900 Lactuca sativa HOM05D003917 ORTHO05D005104 4.1e-51 205.3 155 71.0
Solyc07g064600.3 Solanum lycopersicum HOM05D003917 ORTHO05D005104 4.1e-51 205.3 181 59.7
PGSC0003DMG400022217 Solanum tuberosum HOM05D003917 ORTHO05D005104 9.2e-51 204.1 181 60.2
AagrBONN_evm.TU.Sc2ySwM_117.1972 Anthoceros agrestis HOM05D003917 ORTHO05D005104 1.2e-50 203.8 144 73.6
Sabra11G0125600 Salix brachista HOM05D003917 ORTHO05D005104 2.7e-50 202.6 124 83.1
BcaB04g20655 Brassica carinata HOM05D003917 ORTHO05D005104 1.0e-49 200.7 198 59.6
Sopen07g032790 Solanum pennellii HOM05D003917 ORTHO05D005104 1.0e-49 200.7 173 60.7
BolC1t04332H Brassica oleracea HOM05D003917 ORTHO05D005104 1.9e-48 196.4 191 62.3
Mapoly0108s0009 Marchantia polymorpha HOM05D003917 ORTHO05D005104 4.3e-48 195.3 132 75.8
BraA01t03528Z Brassica rapa HOM05D003917 ORTHO05D005104 7.3e-48 194.5 152 69.1
CiPaw.11G189400 Carya illinoinensis HOM05D003917 ORTHO05D005104 7.3e-48 194.5 190 58.9
C01p43730 Brassica napus HOM05D003917 ORTHO05D005104 1.2e-47 193.7 152 69.1
A01p34300 Brassica napus HOM05D003917 ORTHO05D005104 1.6e-47 193.4 152 69.1
BcaC09g48993 Brassica carinata HOM05D003917 ORTHO05D005104 3.6e-47 192.2 200 59.0
Pp3c13_21770 Physcomitrium patens HOM05D003917 ORTHO05D005104 3.1e-46 189.1 195 58.5
MELO3C031909.2 Cucumis melo HOM05D003917 ORTHO05D005104 8.9e-46 187.6 147 70.7
Duzib093G1533 Durio zibethinus HOM05D003917 ORTHO05D005104 1.5e-45 186.8 156 65.4
Duzib093G1470 Durio zibethinus HOM05D003917 ORTHO05D005104 5.8e-45 184.9 156 64.7
Glyma.02G291100 Glycine max HOM05D003917 ORTHO05D005104 6.4e-44 181.4 141 69.5
A01p34290 Brassica napus HOM05D003917 ORTHO05D005104 2.5e-40 169.5 201 54.7
CBR_g32332 Chara braunii HOM05D003917 ORTHO05D005104 5.6e-40 168.3 125 67.2
Sed0024585 Sechium edule HOM05D003917 ORTHO05D005104 1.8e-38 163.3 190 53.2
MELO3C025369.2 Cucumis melo HOM05D003917 ORTHO05D005104 9.9e-37 157.5 188 51.6
ClCG10G005350 Citrullus lanatus HOM05D003917 ORTHO05D005104 2.2e-36 156.4 189 49.2
MCO11G845 Micromonas commoda HOM05D003917 ORTHO05D005104 2.9e-36 156.0 124 62.9
CsaV3_3G005070 Cucumis sativus L. HOM05D003917 ORTHO05D005104 6.4e-36 154.8 188 51.1
Cre16.g669650 Chlamydomonas reinhardtii HOM05D003917 ORTHO05D005104 2.7e-34 149.4 129 62.0
BcaC05g28324 Brassica carinata HOM05D000399 ORTHO05D000304 1.0e-33 147.5 96 82.3
Sed0017343 Sechium edule HOM05D003917 ORTHO05D005104 1.3e-33 147.1 188 51.1
Phvul.008G266800 Phaseolus vulgaris HOM05D003917 ORTHO05D005104 3.0e-33 146.0 131 61.8
PRCOL_00004025 Prasinoderma coloniale HOM05D003917 ORTHO05D005104 8.6e-33 144.4 127 56.7
ATR0776G085 Amborella trichopoda HOM05D003917 ORTHO05D005104 1.9e-32 143.3 102 67.6
Oeu042771.1 Olea europaea HOM05D003917 ORTHO05D005104 4.3e-32 142.1 124 66.1
BcaC01g01693 Brassica carinata HOM05D003917 ORTHO05D005104 1.4e-30 137.1 87 81.6
FAN16G0616 Fragaria x ananassa HOM05D003917 ORTHO05D005104 1.4e-30 137.1 111 66.7
ATR0794G030 Amborella trichopoda HOM05D003917 ORTHO05D005104 3.4e-29 132.5 191 42.9
ATR0794G138 Amborella trichopoda HOM05D003917 ORTHO05D005104 1.4e-27 127.1 103 58.3
BraA01t03527Z Brassica rapa HOM05D003917 ORTHO05D005104 1.4e-27 127.1 154 55.2
FAN16G0676 Fragaria x ananassa HOM05D003917 ORTHO05D005104 2.1e-23 113.2 69 82.6
Gorai.002G088600 Gossypium raimondii HOM05D003917 ORTHO05D005104 1.3e-20 104.0 68 76.5
Gohir.D01G066600 Gossypium hirsutum HOM05D003917 ORTHO05D005104 4.9e-20 102.1 68 75.0
SGA_v2.0_scaffold698G53480 Striga asiatica HOM05D003917 ORTHO05D024981 1.7e-17 93.6 74 70.3
CBR_g3731 Chara braunii HOM05D003917 ORTHO05D028724 2.3e-17 93.2 91 53.8
SGA_v2.0_scaffold31G12886 Striga asiatica HOM05D003917 ORTHO05D024981 3.9e-17 92.4 74 68.9
AUR62006502 Chenopodium quinoa HOM05D003917 ORTHO05D024981 6.6e-17 91.7 57 77.2
AUR62016539 Chenopodium quinoa HOM05D003917 ORTHO05D024981 1.1e-16 90.9 54 79.6
C01p43720 Brassica napus HOM05D003917 ORTHO05D005104 1.5e-16 90.5 128 50.8
BolC1t04330H Brassica oleracea HOM05D003917 ORTHO05D005104 2.5e-16 89.7 128 50.8
Pp3s32_520 Physcomitrium patens HOM05D003917 ORTHO05D309786 6.2e-15 85.1 124 39.5
Oeu021198.1 Olea europaea HOM05D003917 ORTHO05D005104 1.4e-14 84.0 47 85.1
Aa31LG8G10060 Aethionema arabicum HOM05D002406 ORTHO05D007964 7.6e-13 78.2 123 48.0
Sc05g0005010 Simmondsia chinensis HOM05D006016 ORTHO05D007553 6.0e-10 68.6 81 49.4
BcaC05g26491 Brassica carinata HOM05D003917 ORTHO05D001048 1.9e-08 63.5 50 66.0
BolC6t38526H Brassica oleracea HOM05D003917 ORTHO05D001048 1.9e-08 63.5 57 56.1
C05p25410 Brassica napus HOM05D003917 ORTHO05D001048 3.3e-08 62.8 57 56.1
BolC6t39957H Brassica oleracea HOM05D003917 ORTHO05D001048 2.1e-07 60.1 57 54.4


User provided reference genes

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