Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGSC0003DMG400011663 Solanum tuberosum HOM05D006705 ORTHO05D008179 2.8e-177 626.3 318 100.0
Solyc08g045850.3 Solanum lycopersicum HOM05D006705 ORTHO05D008179 6.0e-156 555.4 309 92.9
Sopen08g014170 Solanum pennellii HOM05D006705 ORTHO05D008179 3.9e-155 552.7 310 92.3
Nitab4.5_0000337g0230 Nicotiana tabacum HOM05D006705 ORTHO05D008179 2.5e-138 496.9 334 81.7
CAN.G985.2 Capsicum annuum HOM05D006705 ORTHO05D008179 6.7e-131 472.2 335 77.3
Nitab4.5_0025577g0010 Nicotiana tabacum HOM05D006705 ORTHO05D008179 7.4e-130 468.8 314 81.8
Peaxi162Scf00400g00113 Petunia axillaris HOM05D006705 ORTHO05D008179 1.3e-118 431.4 332 73.8
Dinv05535 Davidia involucrata HOM05D006705 ORTHO05D008179 1.6e-103 381.3 311 68.2
Migut.C00960 Erythranthe guttata HOM05D006705 ORTHO05D008179 2.0e-103 380.9 312 66.7
Cc10_g00680 Coffea canephora HOM05D006705 ORTHO05D008179 6.5e-102 375.9 321 65.4
MSTRG.1107 Avicennia marina HOM05D006705 ORTHO05D008179 2.5e-101 374.0 311 64.6
Oeu007482.1 Olea europaea HOM05D006705 ORTHO05D008179 2.5e-101 374.0 259 73.4
Actinidia15490 Actinidia chinensis HOM05D006705 ORTHO05D008179 2.7e-100 370.5 312 66.7
Lsat_1_v5_gn_9_45140 Lactuca sativa HOM05D006705 ORTHO05D008179 1.4e-99 368.2 317 64.0
CSS0019684 Camellia sinensis var. sinensis HOM05D006705 ORTHO05D008179 6.8e-99 365.9 252 76.2
CSS0004504 Camellia sinensis var. sinensis HOM05D006705 ORTHO05D008179 2.6e-98 364.0 319 63.9
Hma1.2p1_0507F.1_g168450 Hydrangea macrophylla HOM05D006705 ORTHO05D008179 2.8e-97 360.5 255 73.3
TAR376G0550 Trochodendron aralioides HOM05D006705 ORTHO05D008179 2.8e-97 360.5 252 74.6
SalBow7G0522 Salvia bowleyana HOM05D006705 ORTHO05D008179 4.9e-97 359.8 302 65.2
Nn5g30939 Nelumbo nucifera HOM05D006705 ORTHO05D008179 4.1e-96 356.7 255 73.3
ClCG08G009460 Citrullus lanatus HOM05D006705 ORTHO05D008179 4.5e-95 353.2 261 70.9
Sed0011006 Sechium edule HOM05D006705 ORTHO05D008179 1.0e-94 352.1 311 62.7
Cfa014075 Carpinus fangiana HOM05D006705 ORTHO05D008179 2.3e-94 350.9 279 69.5
Rhsim06G0007500 Rhododendron simsii HOM05D006705 ORTHO05D008179 3.8e-94 350.1 274 68.2
Haze_22772 Corylus avellana HOM05D006705 ORTHO05D008179 8.6e-94 349.0 281 69.0
MELO3C026541.2 Cucumis melo HOM05D006705 ORTHO05D008179 3.3e-93 347.1 268 69.0
CsaV3_6G031600 Cucumis sativus L. HOM05D006705 ORTHO05D008179 3.3e-93 347.1 268 67.9
DCAR_013913 Daucus carota HOM05D006705 ORTHO05D008179 5.6e-93 346.3 306 63.7
RcHm_v2.0_Chr6g0304261 Rosa chinensis HOM05D006705 ORTHO05D008179 5.6e-93 346.3 258 70.9
vmacro21812 Vaccinium macrocarpon HOM05D006705 ORTHO05D008179 3.6e-92 343.6 259 70.3
Ca_15434_v3 Cicer arietinum L. HOM05D006705 ORTHO05D008179 2.3e-91 340.9 258 69.4
Ca_15459_v3 Cicer arietinum L. HOM05D006705 ORTHO05D008179 2.3e-91 340.9 258 69.4
FAN27G0286 Fragaria x ananassa HOM05D006705 ORTHO05D008179 3.0e-91 340.5 244 72.1
Ciclev10000451m.g Citrus clementina HOM05D006705 ORTHO05D008179 4.0e-91 340.1 251 70.9
Manes.05G134500 Manihot esculenta HOM05D006705 ORTHO05D008179 5.2e-91 339.7 273 66.7
Cpa.g.sc26.199 Carica papaya HOM05D006705 ORTHO05D008179 6.8e-91 339.3 286 64.3
Glyma.06G018300 Glycine max HOM05D006705 ORTHO05D008179 8.9e-91 339.0 280 64.6
QL02p014030 Quercus lobata HOM05D006705 ORTHO05D008179 8.9e-91 339.0 248 72.2
Glyma.04G018000 Glycine max HOM05D006705 ORTHO05D008179 1.5e-90 338.2 302 62.3
AUR62043173 Chenopodium quinoa HOM05D006705 ORTHO05D008179 5.7e-90 336.3 322 58.4
THA.LOC104825423 Tarenaya hassleriana HOM05D006705 ORTHO05D008179 1.3e-89 335.1 279 63.1
Atru.chr13.134 Acer truncatum HOM05D006705 ORTHO05D008179 1.7e-89 334.7 263 66.5
CANSAT25G1831 Cannabis sativa HOM05D006705 ORTHO05D008179 3.7e-89 333.6 261 66.3
Psat5g159080 Pisum sativum HOM05D006705 ORTHO05D008179 6.4e-89 332.8 261 67.4
Thecc.08G058800 Theobroma cacao HOM05D006705 ORTHO05D008179 6.4e-89 332.8 255 69.4
Lalb_Chr11g0061641 Lupinus albus HOM05D006705 ORTHO05D008179 8.3e-89 332.4 247 68.4
AUR62036875 Chenopodium quinoa HOM05D006705 ORTHO05D008179 1.1e-88 332.0 263 65.4
Lsat_1_v5_gn_8_26180 Lactuca sativa HOM05D006705 ORTHO05D008179 1.1e-88 332.0 315 59.0
GSVIVG01013362001 Vitis vinifera HOM05D006705 ORTHO05D008179 1.1e-88 332.0 302 62.3
Aqoxy5G01043 Aquilegia oxysepala HOM05D006705 ORTHO05D008179 1.4e-88 331.6 259 66.8
Gorai.002G117100 Gossypium raimondii HOM05D006705 ORTHO05D008179 1.8e-88 331.3 255 69.4
COL.COLO4_06661 Corchorus olitorius HOM05D006705 ORTHO05D008179 3.2e-88 330.5 266 67.7
Gohir.D01G092000 Gossypium hirsutum HOM05D006705 ORTHO05D008179 4.1e-88 330.1 255 69.0
Hund05113 Selenicereus undatus HOM05D006705 ORTHO05D008179 4.1e-88 330.1 324 58.0
FvH4_2g37460 Fragaria vesca HOM05D006705 ORTHO05D008179 9.2e-88 328.9 250 68.8
Potri.005G250200 Populus trichocarpa HOM05D006705 ORTHO05D008179 9.2e-88 328.9 281 64.1
arahy.Tifrunner.gnm1.ann1.1DQJ64 Arachis hypogaea HOM05D006705 ORTHO05D008179 1.6e-87 328.2 225 74.7
VMungo1309G2580 Vigna mungo HOM05D006705 ORTHO05D008179 2.7e-87 327.4 249 67.9
Gohir.A01G105700 Gossypium hirsutum HOM05D006705 ORTHO05D008179 3.5e-87 327.0 255 69.0
arahy.Tifrunner.gnm1.ann1.A2XG10 Arachis hypogaea HOM05D006705 ORTHO05D008179 5.9e-87 326.2 225 74.2
Sabra05G0193800 Salix brachista HOM05D006705 ORTHO05D008179 5.9e-87 326.2 283 63.3
SGA_v2.0_scaffold108G30860 Striga asiatica HOM05D006705 ORTHO05D008179 5.9e-87 326.2 299 60.9
Aa31LG9G12430 Aethionema arabicum HOM05D006705 ORTHO05D008179 7.8e-87 325.9 300 59.3
FAN15G2229 Fragaria x ananassa HOM05D006705 ORTHO05D008179 7.8e-87 325.9 235 71.9
HanXRQChr05g0146791 Helianthus annuus HOM05D006705 ORTHO05D008179 7.8e-87 325.9 239 69.9
PSO170G2138 Papaver somniferum HOM05D006705 ORTHO05D008179 7.8e-87 325.9 252 66.3
CARHR284920 Cardamine hirsuta HOM05D006705 ORTHO05D008179 1.0e-86 325.5 277 65.0
Phvul.009G010700 Phaseolus vulgaris HOM05D006705 ORTHO05D008179 2.3e-86 324.3 263 64.6
Prupe.1G354600 Prunus persica HOM05D006705 ORTHO05D008179 6.6e-86 322.8 238 71.8
CDE02G1751 Ceratophyllum demersum HOM05D006705 ORTHO05D008179 8.6e-86 322.4 271 64.6
PSO210G3824 Papaver somniferum HOM05D006705 ORTHO05D008179 1.1e-85 322.0 252 65.5
MD12G1003200 Malus domestica HOM05D006705 ORTHO05D008179 1.5e-85 321.6 264 65.5
Medtr3g115270 Medicago truncatula HOM05D006705 ORTHO05D008179 1.9e-85 321.2 294 60.2
ECA232G0132 Erigeron canadensis HOM05D006705 ORTHO05D008179 9.5e-85 318.9 250 66.4
Sabra02G0008200 Salix brachista HOM05D006705 ORTHO05D008179 1.4e-83 315.1 248 65.7
EL10Ac1g01967 Beta vulgaris HOM05D006705 ORTHO05D008179 1.2e-82 312.0 238 67.2
Thhalv10027665m.g Eutrema salsugineum HOM05D006705 ORTHO05D008179 1.5e-82 311.6 249 65.5
CiPaw.08G072900 Carya illinoinensis HOM05D006705 ORTHO05D008179 3.4e-82 310.5 304 59.9
HanXRQChr12g0367581 Helianthus annuus HOM05D006705 ORTHO05D008179 3.4e-82 310.5 275 61.5
Sc15g0004450 Simmondsia chinensis HOM05D006705 ORTHO05D008179 7.5e-82 309.3 304 54.9
Carub.0008s0687 Capsella rubella HOM05D006705 ORTHO05D008179 9.8e-82 308.9 255 63.9
Sp7g08260 Schrenkiella parvula HOM05D006705 ORTHO05D008179 4.9e-81 306.6 246 65.4
AT5G42310 Arabidopsis thaliana HOM05D006705 ORTHO05D008179 6.4e-81 306.2 259 62.5
AL8G19290 Arabidopsis lyrata HOM05D006705 ORTHO05D008179 1.1e-80 305.4 252 63.5
BcaC02g10761 Brassica carinata HOM05D006705 ORTHO05D008179 1.1e-80 305.4 264 62.1
C04p25410 Brassica napus HOM05D006705 ORTHO05D008179 1.1e-80 305.4 264 62.1
BolC4t24049H Brassica oleracea HOM05D006705 ORTHO05D008179 1.1e-80 305.4 264 62.1
TPR.G38137 Trifolium pratense HOM05D006705 ORTHO05D008179 2.4e-80 304.3 242 66.1
A03p65890 Brassica napus HOM05D006705 ORTHO05D008179 4.1e-80 303.5 265 61.5
BraA03t15643Z Brassica rapa HOM05D006705 ORTHO05D008179 4.1e-80 303.5 265 61.5
Lj1g0004605 Lotus japonicus HOM05D006705 ORTHO05D008179 9.2e-80 302.4 255 64.7
Ah.11g041180 Amaranthus hybridus HOM05D006705 ORTHO05D008179 1.2e-79 302.0 290 60.0
BcaC06g31759 Brassica carinata HOM05D006705 ORTHO05D008179 2.7e-79 300.8 234 67.1
Potri.002G010900 Populus trichocarpa HOM05D006705 ORTHO05D008179 4.6e-79 300.1 228 66.7
ECA233G5787 Erigeron canadensis HOM05D006705 ORTHO05D008179 3.9e-78 297.0 316 53.5
PGR031G2749 Punica granatum HOM05D006705 ORTHO05D008179 3.9e-78 297.0 280 61.1
MD15G1002100 Malus domestica HOM05D006705 ORTHO05D008179 8.6e-78 295.8 238 66.4
CDE04G2934 Ceratophyllum demersum HOM05D006705 ORTHO05D008179 3.6e-76 290.4 245 64.5
Lj4A11G70 Lonicera japonica HOM05D006705 ORTHO05D008179 4.1e-72 276.9 171 82.5
Eucgr.F03553 Eucalyptus grandis HOM05D006705 ORTHO05D008179 3.0e-54 217.6 165 70.9
FAN20G2687 Fragaria x ananassa HOM05D000148 ORTHO05D008179 5.6e-53 213.4 166 64.5
HPP92_000875 Vanilla planifolia HOM05D006705 ORTHO05D008179 9.0e-51 206.1 299 43.1
MBI08_g41522_MAGBIO Magnolia biondii HOM05D006705 ORTHO05D008179 5.8e-50 203.4 308 45.8
ATR0661G389 Amborella trichopoda HOM05D006705 ORTHO05D008179 2.4e-40 171.4 214 45.3
SEGI_04333 Sequoiadendron giganteum HOM05D006705 ORTHO05D000002 1.8e-30 138.7 207 41.1
Mapoly0048s0090 Marchantia polymorpha HOM05D006705 ORTHO05D008179 6.7e-30 136.7 218 39.9
Os07g0548300 Oryza sativa ssp. japonica HOM05D006705 ORTHO05D008179 5.9e-26 123.6 300 34.0
Zm00001eb323580 Zea mays HOM05D006705 ORTHO05D008179 7.6e-26 123.2 302 32.5
AagrBONN_evm.TU.Sc2ySwM_362.1316 Anthoceros agrestis HOM05D006705 ORTHO05D008179 6.9e-19 100.1 229 29.3
SMO180G0012 Selaginella moellendorffii HOM05D006705 ORTHO05D008179 2.6e-18 98.2 172 33.1
Nitab4.5_0002710g0130 Nicotiana tabacum HOM05D006705 ORTHO05D008179 1.7e-17 95.5 52 90.4
CDE02G4098 Ceratophyllum demersum HOM05D006705 ORTHO05D008179 9.4e-16 89.7 51 84.3
FvH4_5g30181 Fragaria vesca HOM05D006705 ORTHO05D008179 9.4e-16 89.7 88 55.7
Eucgr.F03554 Eucalyptus grandis HOM05D006705 ORTHO05D008179 4.6e-15 87.4 52 76.9
Gohir.D06G036701 Gossypium hirsutum HOM05D006705 ORTHO05D008179 3.9e-14 84.3 52 76.9
Gorai.010G041000 Gossypium raimondii HOM05D006705 ORTHO05D008179 3.9e-14 84.3 52 76.9
Gohir.D05G336850 Gossypium hirsutum HOM05D006705 ORTHO05D008179 2.8e-12 78.2 60 66.7
Pp3c11_21930 Physcomitrium patens HOM05D006705 ORTHO05D008179 2.9e-09 68.2 243 25.9
BcaNung05253 Brassica carinata HOM05D006705 ORTHO05D008179 3.8e-09 67.8 50 62.0
PGR142G2334 Punica granatum HOM05D007456 ORTHO05D009411 4.7e-07 60.8 48 56.2
Cc11_g03880 Coffea canephora HOM05D007456 ORTHO05D009411 6.1e-07 60.5 43 60.5
Lj1C1032G4 Lonicera japonica HOM05D007456 ORTHO05D009411 2.3e-06 58.5 48 52.1
Gohir.D06G157800 Gossypium hirsutum HOM05D000485 ORTHO05D000341 6.7e-06 57.0 36 75.0


User provided reference genes

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