Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGSC0003DMG400011604 Solanum tuberosum HOM05D006077 ORTHO05D007499 2.3e-65 251.9 112 100.0
Medtr8g020500 Medicago truncatula HOM05D006077 ORTHO05D007499 6.1e-18 94.4 45 93.3
CAN.G1368.2 Capsicum annuum HOM05D006077 ORTHO05D007499 8.0e-18 94.0 45 93.3
CiPaw.02G136000 Carya illinoinensis HOM05D006077 ORTHO05D007499 8.0e-18 94.0 45 93.3
Haze_16030 Corylus avellana HOM05D006077 ORTHO05D007499 8.0e-18 94.0 45 93.3
Dinv37869 Davidia involucrata HOM05D006077 ORTHO05D007499 8.0e-18 94.0 45 93.3
Lalb_Chr01g0013591 Lupinus albus HOM05D006077 ORTHO05D007499 8.0e-18 94.0 45 93.3
Rhsim08G0238900 Rhododendron simsii HOM05D006077 ORTHO05D007499 8.0e-18 94.0 45 93.3
Solyc12g049310.2 Solanum lycopersicum HOM05D006077 ORTHO05D007499 8.0e-18 94.0 45 93.3
Sopen12g023790 Solanum pennellii HOM05D006077 ORTHO05D007499 8.0e-18 94.0 45 93.3
TWI75G1673 Tripterygium wilfordii HOM05D006077 ORTHO05D007499 8.0e-18 94.0 45 93.3
TWI79G1574 Tripterygium wilfordii HOM05D006077 ORTHO05D007499 8.0e-18 94.0 45 93.3
Ciclev10026605m.g Citrus clementina HOM05D006077 ORTHO05D007499 1.0e-17 93.6 45 91.1
MD09G1183900 Malus domestica HOM05D006077 ORTHO05D007499 1.0e-17 93.6 56 82.1
Psat4g182400 Pisum sativum HOM05D006077 ORTHO05D007499 1.0e-17 93.6 45 91.1
Prupe.3G042200 Prunus persica HOM05D006077 ORTHO05D007499 1.0e-17 93.6 45 93.3
QL05p007703 Quercus lobata HOM05D006077 ORTHO05D007499 1.0e-17 93.6 44 93.2
Thecc.06G119600 Theobroma cacao HOM05D006077 ORTHO05D007499 1.0e-17 93.6 45 93.3
TPR.G32491 Trifolium pratense HOM05D006077 ORTHO05D007499 1.0e-17 93.6 45 91.1
GSVIVG01016766001 Vitis vinifera HOM05D006077 ORTHO05D007499 1.0e-17 93.6 45 93.3
Hma1.2p1_0496F.1_g166240 Hydrangea macrophylla HOM05D006077 ORTHO05D007499 1.4e-17 93.2 44 90.9
Hma1.2p1_0291F.1_g115130 Hydrangea macrophylla HOM05D006077 ORTHO05D007499 1.8e-17 92.8 45 91.1
Lj3g0010947 Lotus japonicus HOM05D006077 ORTHO05D007499 1.8e-17 92.8 45 88.9
CANSAT64G0122 Cannabis sativa HOM05D006077 ORTHO05D007499 2.3e-17 92.4 45 93.3
CANSAT64G2602 Cannabis sativa HOM05D006077 ORTHO05D007499 2.3e-17 92.4 45 93.3
CDE11G1182 Ceratophyllum demersum HOM05D006077 ORTHO05D007499 2.3e-17 92.4 44 88.6
FvH4_6g34660 Fragaria vesca HOM05D006077 ORTHO05D007499 2.3e-17 92.4 45 91.1
FAN05G2137 Fragaria x ananassa HOM05D006077 ORTHO05D007499 2.3e-17 92.4 45 91.1
FAN09G3570 Fragaria x ananassa HOM05D006077 ORTHO05D007499 2.3e-17 92.4 45 91.1
FAN14G4463 Fragaria x ananassa HOM05D006077 ORTHO05D007499 2.3e-17 92.4 45 91.1
Glyma.07G038100 Glycine max HOM05D006077 ORTHO05D007499 2.3e-17 92.4 45 91.1
Phvul.010G130300 Phaseolus vulgaris HOM05D006077 ORTHO05D007499 2.3e-17 92.4 45 91.1
RcHm_v2.0_Chr2g0145211 Rosa chinensis HOM05D006077 ORTHO05D007499 2.3e-17 92.4 45 91.1
RcHm_v2.0_Chr3g0490611 Rosa chinensis HOM05D006077 ORTHO05D007499 2.3e-17 92.4 45 91.1
RcHm_v2.0_Chr5g0053491 Rosa chinensis HOM05D006077 ORTHO05D007499 2.3e-17 92.4 45 91.1
VMungo0331G1077 Vigna mungo HOM05D006077 ORTHO05D007499 2.3e-17 92.4 45 91.1
ATR0598G320 Amborella trichopoda HOM05D006077 ORTHO05D007499 3.0e-17 92.0 45 91.1
Glyma.16G007300 Glycine max HOM05D006077 ORTHO05D007499 3.0e-17 92.0 45 88.9
SalBow6G4082 Salvia bowleyana HOM05D006077 ORTHO05D007499 3.0e-17 92.0 45 91.1
SalBow6G4389 Salvia bowleyana HOM05D006077 ORTHO05D007499 3.0e-17 92.0 45 91.1
Actinidia26028 Actinidia chinensis HOM05D006077 ORTHO05D007499 4.0e-17 91.7 45 91.1
CSS0011852 Camellia sinensis var. sinensis HOM05D006077 ORTHO05D007499 4.0e-17 91.7 45 91.1
Migut.D00939 Erythranthe guttata HOM05D006077 ORTHO05D007499 4.0e-17 91.7 45 91.1
Gohir.A05G405800 Gossypium hirsutum HOM05D006077 ORTHO05D007499 4.0e-17 91.7 45 91.1
Gohir.D04G009800 Gossypium hirsutum HOM05D006077 ORTHO05D007499 4.0e-17 91.7 45 91.1
Gorai.012G011600 Gossypium raimondii HOM05D006077 ORTHO05D007499 4.0e-17 91.7 45 91.1
Nitab4.5_0000189g0210 Nicotiana tabacum HOM05D006077 ORTHO05D007499 4.0e-17 91.7 41 100.0
Nitab4.5_0001199g0100 Nicotiana tabacum HOM05D006077 ORTHO05D007499 4.0e-17 91.7 41 100.0
Sc15g0000510 Simmondsia chinensis HOM05D006077 ORTHO05D007499 4.0e-17 91.7 45 91.1
Peaxi162Scf00177g00511 Petunia axillaris HOM05D006077 ORTHO05D007499 5.2e-17 91.3 45 91.1
Hund05739 Selenicereus undatus HOM05D006077 ORTHO05D007499 5.2e-17 91.3 45 91.1
TAR636G2213 Trochodendron aralioides HOM05D006077 ORTHO05D007499 5.2e-17 91.3 45 91.1
PSO063G4040 Papaver somniferum HOM05D006077 ORTHO05D007499 6.7e-17 90.9 45 91.1
PSO421G0038 Papaver somniferum HOM05D006077 ORTHO05D007499 6.7e-17 90.9 45 91.1
AL1G62920 Arabidopsis lyrata HOM05D006077 ORTHO05D007499 1.2e-16 90.1 42 95.2
AL3G26170 Arabidopsis lyrata HOM05D006077 ORTHO05D007499 1.2e-16 90.1 42 95.2
AT1G54210 Arabidopsis thaliana HOM05D006077 ORTHO05D007499 1.2e-16 90.1 42 95.2
Carub.0001s4344 Capsella rubella HOM05D006077 ORTHO05D007499 1.2e-16 90.1 42 95.2
Sp3g12220 Schrenkiella parvula HOM05D006077 ORTHO05D007499 1.2e-16 90.1 42 95.2
Aqoxy7G01092 Aquilegia oxysepala HOM05D006077 ORTHO05D007499 2.6e-16 89.0 45 88.9
arahy.Tifrunner.gnm1.ann1.G5XP6S Arachis hypogaea HOM05D006077 ORTHO05D007499 2.6e-16 89.0 45 86.7
arahy.Tifrunner.gnm1.ann1.G7AU8E Arachis hypogaea HOM05D006077 ORTHO05D007499 2.6e-16 89.0 45 86.7
Eucgr.F03177 Eucalyptus grandis HOM05D006077 ORTHO05D007499 2.6e-16 89.0 45 88.9
Potri.003G064300 Populus trichocarpa HOM05D006077 ORTHO05D007499 2.6e-16 89.0 46 82.6
Ah.08g216780 Amaranthus hybridus HOM05D006077 ORTHO05D007499 3.3e-16 88.6 45 86.7
BcaB06g25414 Brassica carinata HOM05D006077 ORTHO05D007499 5.7e-16 87.8 42 92.9
BcaC05g29136 Brassica carinata HOM05D006077 ORTHO05D007499 5.7e-16 87.8 42 92.9
A05p35440 Brassica napus HOM05D006077 ORTHO05D007499 5.7e-16 87.8 42 92.9
C05p53730 Brassica napus HOM05D006077 ORTHO05D007499 5.7e-16 87.8 42 92.9
BolC5t34043H Brassica oleracea HOM05D006077 ORTHO05D007499 5.7e-16 87.8 42 92.9
BraA05t22354Z Brassica rapa HOM05D006077 ORTHO05D007499 5.7e-16 87.8 42 92.9
CiPaw.01G218900 Carya illinoinensis HOM05D006077 ORTHO05D007499 5.7e-16 87.8 46 89.1
Manes.11G020500 Manihot esculenta HOM05D006077 ORTHO05D007499 5.7e-16 87.8 45 84.4
Cc00_g21000 Coffea canephora HOM05D006077 ORTHO05D007499 7.5e-16 87.4 45 84.4
Lsat_1_v5_gn_4_92920 Lactuca sativa HOM05D006077 ORTHO05D007499 7.5e-16 87.4 45 86.7
Thhalv10021863m.g Eutrema salsugineum HOM05D006077 ORTHO05D007499 9.7e-16 87.0 41 95.1
SGA_v2.0_scaffold4G02063 Striga asiatica HOM05D006077 ORTHO05D007499 9.7e-16 87.0 45 82.2
Sed0008411 Sechium edule HOM05D006077 ORTHO05D007499 1.3e-15 86.7 46 82.6
Carub.0003s1355 Capsella rubella HOM05D006077 ORTHO05D007499 1.7e-15 86.3 42 92.9
ClCG07G014030 Citrullus lanatus HOM05D006077 ORTHO05D007499 1.7e-15 86.3 46 82.6
MELO3C025809.2 Cucumis melo HOM05D006077 ORTHO05D007499 1.7e-15 86.3 46 82.6
CsaV3_3G043520 Cucumis sativus L. HOM05D006077 ORTHO05D007499 1.7e-15 86.3 46 82.6
ECA232G1087 Erigeron canadensis HOM05D006077 ORTHO05D007499 1.7e-15 86.3 45 84.4
Potri.001G169700 Populus trichocarpa HOM05D006077 ORTHO05D007499 1.7e-15 86.3 45 82.2
Aa31LG8G1170 Aethionema arabicum HOM05D006077 ORTHO05D007499 2.2e-15 85.9 42 92.9
CARHR044580 Cardamine hirsuta HOM05D006077 ORTHO05D007499 2.2e-15 85.9 42 92.9
THA.LOC104822655 Tarenaya hassleriana HOM05D006077 ORTHO05D007499 2.2e-15 85.9 42 92.9
Os06g0205000 Oryza sativa ssp. japonica HOM05D006077 ORTHO05D007499 2.8e-15 85.5 94 51.1
SalBow6G7202 Salvia bowleyana HOM05D006077 ORTHO05D007499 3.7e-15 85.1 52 78.8
Sed0025034 Sechium edule HOM05D006077 ORTHO05D007499 4.8e-15 84.7 46 80.4
Mapoly0025s0134 Marchantia polymorpha HOM05D006077 ORTHO05D007499 8.2e-15 84.0 45 80.0
Zm00001eb256700 Zea mays HOM05D006077 ORTHO05D007499 1.1e-14 83.6 42 88.1
BcaB07g33245 Brassica carinata HOM05D006077 ORTHO05D007499 1.4e-14 83.2 42 90.5
BcaB07g33246 Brassica carinata HOM05D006077 ORTHO05D007499 1.4e-14 83.2 42 90.5
BcaC08g43600 Brassica carinata HOM05D006077 ORTHO05D007499 1.4e-14 83.2 42 90.5
A06p00460 Brassica napus HOM05D006077 ORTHO05D007499 1.4e-14 83.2 42 90.5
C06p09980 Brassica napus HOM05D006077 ORTHO05D007499 1.4e-14 83.2 42 90.5
BolC6t36071H Brassica oleracea HOM05D006077 ORTHO05D007499 1.4e-14 83.2 42 90.5
BraA06t23260Z Brassica rapa HOM05D006077 ORTHO05D007499 1.4e-14 83.2 42 90.5
Thhalv10011896m.g Eutrema salsugineum HOM05D006077 ORTHO05D007499 1.4e-14 83.2 42 90.5
AagrBONN_evm.TU.Sc2ySwM_228.485 Anthoceros agrestis HOM05D006077 ORTHO05D007499 1.8e-14 82.8 45 80.0
Manes.04G144301 Manihot esculenta HOM05D006077 ORTHO05D007499 1.2e-13 80.1 43 79.1
Pp3c4_29920 Physcomitrium patens HOM05D006077 ORTHO05D007499 2.7e-13 79.0 45 73.3
RcHm_v2.0_Chr5g0040601 Rosa chinensis HOM05D006077 ORTHO05D007499 7.7e-13 77.4 45 73.3
Nn4g24846 Nelumbo nucifera HOM05D006077 ORTHO05D007499 2.1e-10 69.3 36 86.1
unitig_699.g19648 Utricularia gibba HOM05D002868 ORTHO05D003477 3.4e-08 62.0 45 68.9
CBR_g34185 Chara braunii HOM05D000019 ORTHO05D001702 2.2e-07 59.3 34 73.5
SMO364G0450 Selaginella moellendorffii HOM05D006077 ORTHO05D007499 3.7e-07 58.5 45 53.3
MCO16G375 Micromonas commoda HOM05D006077 ORTHO05D007499 1.1e-06 57.0 43 60.5


User provided reference genes

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