Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGSC0003DMG400010074 Solanum tuberosum HOM05D005480 ORTHO05D006735 4.7e-217 758.1 535 100.0
Sopen02g034920 Solanum pennellii HOM05D005480 ORTHO05D006735 4.6e-204 714.9 535 95.3
Solyc02g090230.4 Solanum lycopersicum HOM05D005480 ORTHO05D006735 1.5e-202 709.9 537 95.5
Peaxi162Scf00993g00022 Petunia axillaris HOM05D005480 ORTHO05D006735 4.8e-161 572.0 389 87.1
CSS0014684 Camellia sinensis var. sinensis HOM05D005480 ORTHO05D006735 8.2e-153 544.7 421 77.0
CAN.G836.34 Capsicum annuum HOM05D005480 ORTHO05D006735 1.4e-152 543.9 377 86.2
Lj7A20T61 Lonicera japonica HOM05D005480 ORTHO05D006735 4.2e-149 532.3 413 74.8
Dinv39906 Davidia involucrata HOM05D005480 ORTHO05D006735 1.6e-148 530.4 423 71.6
Eucgr.H01972 Eucalyptus grandis HOM05D005480 ORTHO05D006735 1.6e-148 530.4 435 72.0
CSS0005424 Camellia sinensis var. sinensis HOM05D005480 ORTHO05D006735 2.1e-148 530.0 421 75.8
Nitab4.5_0000108g0300 Nicotiana tabacum HOM05D005480 ORTHO05D006735 1.8e-147 526.9 419 78.3
Nitab4.5_0001014g0070 Nicotiana tabacum HOM05D005480 ORTHO05D006735 5.1e-147 525.4 377 83.6
DCAR_021432 Daucus carota HOM05D005480 ORTHO05D006735 1.9e-146 523.5 418 73.0
Lj7A18T44 Lonicera japonica HOM05D005480 ORTHO05D006735 4.3e-146 522.3 421 72.9
Actinidia12077 Actinidia chinensis HOM05D005480 ORTHO05D006735 3.7e-145 519.2 422 74.6
Cc07_g05560 Coffea canephora HOM05D005480 ORTHO05D006735 8.2e-145 518.1 422 70.1
CiPaw.01G026500 Carya illinoinensis HOM05D005480 ORTHO05D006735 2.6e-143 513.1 431 68.2
QL06p043724 Quercus lobata HOM05D005480 ORTHO05D006735 6.5e-142 508.4 443 66.8
Thecc.01G048100 Theobroma cacao HOM05D005480 ORTHO05D006735 1.2e-140 504.2 431 67.5
Dinv26753 Davidia involucrata HOM05D005480 ORTHO05D006735 1.8e-139 500.4 334 81.4
MELO3C007529.2 Cucumis melo HOM05D005480 ORTHO05D006735 2.3e-139 500.0 428 66.4
Glyma.01G181500 Glycine max HOM05D005480 ORTHO05D006735 3.0e-139 499.6 431 67.5
Hma1.2p1_0546F.1_g176180 Hydrangea macrophylla HOM05D005480 ORTHO05D006735 3.9e-139 499.2 434 66.4
MSTRG.23794 Avicennia marina HOM05D005480 ORTHO05D006735 6.7e-139 498.4 423 70.0
CsaV3_6G042900 Cucumis sativus L. HOM05D005480 ORTHO05D006735 8.8e-139 498.0 429 65.7
TPR.G11349 Trifolium pratense HOM05D005480 ORTHO05D006735 8.8e-139 498.0 434 68.0
Manes.13G130100 Manihot esculenta HOM05D005480 ORTHO05D006735 2.5e-138 496.5 435 70.1
Gohir.A12G068600 Gossypium hirsutum HOM05D005480 ORTHO05D006735 3.3e-138 496.1 431 69.4
PGR102G0042 Punica granatum HOM05D005480 ORTHO05D006735 3.3e-138 496.1 435 69.9
Migut.H00485 Erythranthe guttata HOM05D005480 ORTHO05D006735 9.7e-138 494.6 458 67.0
Medtr5g018390 Medicago truncatula HOM05D005480 ORTHO05D006735 1.1e-136 491.1 432 67.4
TAR625G1062 Trochodendron aralioides HOM05D005480 ORTHO05D006735 1.1e-136 491.1 422 67.3
Gohir.D12G090600 Gossypium hirsutum HOM05D005480 ORTHO05D006735 9.1e-136 488.0 431 66.6
Duzib187G0998 Durio zibethinus HOM05D005480 ORTHO05D006735 5.9e-135 485.3 431 66.6
Gorai.008G072400 Gossypium raimondii HOM05D005480 ORTHO05D006735 1.7e-134 483.8 431 67.5
Rhsim02G0168000 Rhododendron simsii HOM05D005480 ORTHO05D006735 8.5e-134 481.5 396 72.5
Phvul.002G022500 Phaseolus vulgaris HOM05D005480 ORTHO05D006735 1.1e-133 481.1 410 69.3
MD02G1161300 Malus domestica HOM05D005480 ORTHO05D006735 5.5e-133 478.8 431 65.4
Lj2g0021055 Lotus japonicus HOM05D005480 ORTHO05D006735 1.6e-132 477.2 432 67.4
TAR381G0420 Trochodendron aralioides HOM05D005480 ORTHO05D006735 1.6e-132 477.2 386 68.9
VMungo1215G2543 Vigna mungo HOM05D005480 ORTHO05D006735 6.1e-132 475.3 428 64.7
Duzib147G0741 Durio zibethinus HOM05D005480 ORTHO05D006735 7.9e-132 474.9 430 66.5
Sed0026694 Sechium edule HOM05D005480 ORTHO05D006735 1.0e-131 474.6 429 64.1
Ah.02g123950 Amaranthus hybridus HOM05D005480 ORTHO05D006735 3.0e-131 473.0 423 65.7
CANSAT01G1679 Cannabis sativa HOM05D005480 ORTHO05D006735 2.0e-130 470.3 431 67.1
ClCG01G016580 Citrullus lanatus HOM05D005480 ORTHO05D006735 3.3e-130 469.5 477 59.3
Prupe.7G142300 Prunus persica HOM05D005480 ORTHO05D006735 4.4e-130 469.2 432 64.1
Ciclev10025487m.g Citrus clementina HOM05D005480 ORTHO05D006735 1.7e-129 467.2 331 75.8
Glyma.11G059700 Glycine max HOM05D005480 ORTHO05D006735 1.1e-128 464.5 334 73.4
Potri.007G036600 Populus trichocarpa HOM05D005480 ORTHO05D006735 1.1e-128 464.5 440 64.8
MD15G1275400 Malus domestica HOM05D005480 ORTHO05D006735 1.4e-128 464.2 427 68.4
RcHm_v2.0_Chr2g0103771 Rosa chinensis HOM05D005480 ORTHO05D006735 1.8e-128 463.8 425 66.4
Aqoxy5G01417 Aquilegia oxysepala HOM05D005480 ORTHO05D006735 1.5e-127 460.7 430 67.4
Hund13586 Selenicereus undatus HOM05D005480 ORTHO05D006735 4.5e-127 459.1 430 64.2
SGA_v2.0_scaffold15G07231 Striga asiatica HOM05D005480 ORTHO05D006735 2.2e-126 456.8 405 68.9
Sc03g0001260 Simmondsia chinensis HOM05D005480 ORTHO05D006735 6.5e-126 455.3 419 66.6
HanXRQChr04g0123741 Helianthus annuus HOM05D005480 ORTHO05D006735 2.1e-124 450.3 439 65.8
PSO170G5089 Papaver somniferum HOM05D005480 ORTHO05D006735 4.7e-124 449.1 427 67.2
Cfa004218 Carpinus fangiana HOM05D005480 ORTHO05D006735 1.0e-123 448.0 391 66.2
ECA232G3160 Erigeron canadensis HOM05D005480 ORTHO05D006735 1.8e-123 447.2 454 60.8
Lalb_Chr09g0322931 Lupinus albus HOM05D005480 ORTHO05D006735 3.9e-123 446.0 429 67.6
PSO210G7251 Papaver somniferum HOM05D005480 ORTHO05D006735 8.8e-123 444.9 428 66.8
Carub.0007s0332 Capsella rubella HOM05D005480 ORTHO05D006735 1.1e-122 444.5 441 66.4
Oeu003952.2 Olea europaea HOM05D005480 ORTHO05D006735 1.5e-122 444.1 586 50.7
Psat2g164160 Pisum sativum HOM05D005480 ORTHO05D006735 1.5e-122 444.1 423 65.0
THA.LOC104819823 Tarenaya hassleriana HOM05D005480 ORTHO05D006735 2.6e-122 443.4 436 66.5
FAN19G1500 Fragaria x ananassa HOM05D005480 ORTHO05D006735 7.4e-122 441.8 430 64.4
FvH4_1g14810 Fragaria vesca HOM05D005480 ORTHO05D006735 2.8e-121 439.9 429 64.3
Sp7g34650 Schrenkiella parvula HOM05D005480 ORTHO05D006735 4.8e-121 439.1 449 63.5
arahy.Tifrunner.gnm1.ann1.E9URZA Arachis hypogaea HOM05D005480 ORTHO05D006735 8.2e-121 438.3 330 73.0
Nn6g32121 Nelumbo nucifera HOM05D005480 ORTHO05D006735 1.8e-120 437.2 439 63.8
AL7G13910 Arabidopsis lyrata HOM05D005480 ORTHO05D006735 2.0e-119 433.7 429 66.4
FAN23G2977 Fragaria x ananassa HOM05D005480 ORTHO05D006735 4.5e-119 432.6 429 62.0
FAN26G2127 Fragaria x ananassa HOM05D005480 ORTHO05D006735 5.9e-119 432.2 430 64.2
Thhalv10025060m.g Eutrema salsugineum HOM05D005480 ORTHO05D006735 1.3e-118 431.0 434 64.1
vmacro05295 Vaccinium macrocarpon HOM05D005480 ORTHO05D006735 2.2e-118 430.3 370 72.7
AT4G37130 Arabidopsis thaliana HOM05D005480 ORTHO05D006735 6.5e-118 428.7 428 66.4
Lsat_1_v5_gn_4_179460 Lactuca sativa HOM05D005480 ORTHO05D006735 4.7e-116 422.5 431 62.9
Aa31LG6G13860 Aethionema arabicum HOM05D005480 ORTHO05D006735 1.8e-115 420.6 333 69.7
CARHR245380 Cardamine hirsuta HOM05D005480 ORTHO05D006735 1.8e-115 420.6 337 70.0
MBI16_g19897_MAGBIO Magnolia biondii HOM05D005480 ORTHO05D006735 8.8e-115 418.3 407 61.9
CDE01G0732 Ceratophyllum demersum HOM05D005480 ORTHO05D006735 3.3e-114 416.4 433 62.6
COL.COLO4_11327 Corchorus olitorius HOM05D005480 ORTHO05D006735 2.8e-113 413.3 340 69.1
A01p01950 Brassica napus HOM05D005480 ORTHO05D006735 1.1e-112 411.4 434 62.7
BraA01t00184Z Brassica rapa HOM05D005480 ORTHO05D006735 1.1e-112 411.4 434 62.4
unitig_899.g14972 Utricularia gibba HOM05D005480 ORTHO05D006735 2.4e-112 410.2 455 57.4
FAN28G0426 Fragaria x ananassa HOM05D005480 ORTHO05D006735 5.3e-112 409.1 428 61.4
SalBow1G5517 Salvia bowleyana HOM05D006685 ORTHO05D008244 7.2e-109 398.7 272 77.2
ATR0733G143 Amborella trichopoda HOM05D005480 ORTHO05D006735 2.7e-108 396.7 432 55.6
Sabra07G0032600 Salix brachista HOM05D005480 ORTHO05D006735 2.6e-106 390.2 358 65.6
BcaNung03510 Brassica carinata HOM05D005480 ORTHO05D006735 1.7e-105 387.5 439 60.4
BcaB03g12366 Brassica carinata HOM05D005480 ORTHO05D006735 2.2e-105 387.1 452 55.8
C01p02120 Brassica napus HOM05D005480 ORTHO05D006735 2.2e-105 387.1 444 60.8
BolC1t00204H Brassica oleracea HOM05D005480 ORTHO05D006735 3.7e-105 386.3 432 61.8
CDE02G2721 Ceratophyllum demersum HOM05D005480 ORTHO05D006735 6.3e-105 385.6 290 70.3
A08p22500 Brassica napus HOM05D005480 ORTHO05D006735 2.7e-103 380.2 436 55.5
BolC3t20222H Brassica oleracea HOM05D005480 ORTHO05D006735 4.5e-103 379.4 451 54.5
AUR62003828 Chenopodium quinoa HOM05D005480 ORTHO05D006735 4.5e-103 379.4 382 64.9
BraA08t34205Z Brassica rapa HOM05D005480 ORTHO05D006735 7.7e-103 378.6 434 55.5
SHI08751 Sapria himalayana HOM05D005480 ORTHO05D006735 1.0e-102 378.3 407 60.9
BcaC01g00434 Brassica carinata HOM05D005480 ORTHO05D006735 6.1e-100 369.0 458 53.3
C03p79710 Brassica napus HOM05D005480 ORTHO05D006735 6.1e-100 369.0 458 53.3
Haze_15193 Corylus avellana HOM05D005480 ORTHO05D006735 3.7e-97 359.8 336 66.1
Ca_24802_v3 Cicer arietinum L. HOM05D005480 ORTHO05D006735 9.2e-96 355.1 356 65.4
GSVIVG01005079001 Vitis vinifera HOM05D005480 ORTHO05D006735 5.9e-95 352.4 238 77.7
AUR62001975 Chenopodium quinoa HOM05D005480 ORTHO05D006735 3.8e-94 349.7 358 62.0
Os09g0453500 Oryza sativa ssp. japonica HOM05D005480 ORTHO05D006735 4.3e-93 346.3 428 54.0
Zm00001eb314700 Zea mays HOM05D005480 ORTHO05D006735 1.1e-88 331.6 429 53.1
Zm00001eb100530 Zea mays HOM05D005480 ORTHO05D006735 5.6e-85 319.3 426 51.9
BcaB03g12364 Brassica carinata HOM05D005480 ORTHO05D006735 9.5e-85 318.5 441 49.2
arahy.Tifrunner.gnm1.ann1.HXIH5S Arachis hypogaea HOM05D005480 ORTHO05D006735 2.1e-84 317.4 360 58.1
Lalb_Chr05g0213141 Lupinus albus HOM05D005480 ORTHO05D006735 4.0e-83 313.2 252 66.7
AagrBONN_evm.TU.Sc2ySwM_117.4106 Anthoceros agrestis HOM05D005480 ORTHO05D006735 9.2e-80 302.0 341 51.3
SGA_v2.0_scaffold135G34951 Striga asiatica HOM05D005480 ORTHO05D006735 4.9e-73 279.6 399 51.9
Mapoly0027s0041 Marchantia polymorpha HOM05D005480 ORTHO05D006735 4.3e-69 266.5 410 42.2
Ah.03g144040 Amaranthus hybridus HOM05D005480 ORTHO05D006735 2.6e-66 257.3 228 58.8
Pp3c24_6760 Physcomitrium patens HOM05D005480 ORTHO05D006735 1.7e-62 244.6 425 40.7
HPP92_016040 Vanilla planifolia HOM05D005480 ORTHO05D006735 1.6e-60 238.0 209 62.2
SEGI_40098 Sequoiadendron giganteum HOM05D005480 ORTHO05D006735 3.1e-59 233.8 322 49.7
CBR_g66690 Chara braunii HOM05D005480 ORTHO05D006735 4.2e-48 196.8 473 38.9
Os03g0765400 Oryza sativa ssp. japonica HOM05D005480 ORTHO05D006735 1.3e-46 191.8 362 39.0
Psat5g148720 Pisum sativum HOM05D005480 ORTHO05D006735 6.9e-43 179.5 198 57.1
Mapoly0016s0112 Marchantia polymorpha HOM05D005480 ORTHO05D006735 9.3e-40 169.1 331 36.6
Cpa.g.c44085 Carica papaya HOM05D005480 ORTHO05D006735 2.3e-38 164.5 195 58.5
Sabra07G0033400 Salix brachista HOM05D005480 ORTHO05D006735 4.8e-28 130.2 170 61.8
Sabra07G0032900 Salix brachista HOM05D005480 ORTHO05D006735 4.1e-27 127.1 167 61.7
Sabra07G0033100 Salix brachista HOM05D005480 ORTHO05D006735 4.1e-27 127.1 167 61.7
HPP92_016039 Vanilla planifolia HOM05D005480 ORTHO05D006735 5.9e-26 123.2 71 84.5
Ah.03g144030 Amaranthus hybridus HOM05D005480 ORTHO05D006735 7.2e-16 89.7 84 57.1
Cre16.g685217 Chlamydomonas reinhardtii HOM05D005480 ORTHO05D006735 2.2e-12 78.2 255 26.7
C04p28170 Brassica napus HOM05D005480 ORTHO05D006735 1.4e-08 65.5 98 48.0
BolC4t24360H Brassica oleracea HOM05D005480 ORTHO05D006735 1.4e-08 65.5 98 48.0
BcaC02g10502 Brassica carinata HOM05D005480 ORTHO05D006735 1.9e-08 65.1 62 59.7
PRCOL_00002206 Prasinoderma coloniale HOM05D005480 ORTHO05D006735 2.5e-08 64.7 335 25.1


User provided reference genes

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