Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGSC0003DMG400009355 Solanum tuberosum HOM05D003682 ORTHO05D004224 0.0e+00 1253.0 705 100.0
Solyc04g076430.3 Solanum lycopersicum HOM05D003682 ORTHO05D004224 0.0e+00 1185.2 705 93.5
Sopen04g030190 Solanum pennellii HOM05D003682 ORTHO05D004224 0.0e+00 1160.6 705 93.8
CAN.G475.14 Capsicum annuum HOM05D003682 ORTHO05D004224 0.0e+00 1137.1 705 91.6
Nitab4.5_0000131g0160 Nicotiana tabacum HOM05D003682 ORTHO05D004224 0.0e+00 1089.7 701 85.7
Nitab4.5_0006151g0030 Nicotiana tabacum HOM05D003682 ORTHO05D004224 6.2e-310 1067.0 701 87.4
Peaxi162Scf00454g00225 Petunia axillaris HOM05D003682 ORTHO05D004224 3.6e-273 944.9 700 73.9
Lj4A600T32 Lonicera japonica HOM05D003682 ORTHO05D004224 1.0e-203 714.1 704 60.5
Lj4A589T43 Lonicera japonica HOM05D003682 ORTHO05D004224 3.9e-203 712.2 704 63.8
Lj4A739G25 Lonicera japonica HOM05D003682 ORTHO05D004224 9.9e-199 697.6 704 60.5
Actinidia29628 Actinidia chinensis HOM05D003682 ORTHO05D004224 2.1e-196 689.9 704 62.9
Actinidia19624 Actinidia chinensis HOM05D003682 ORTHO05D004224 1.8e-195 686.8 705 62.3
vmacro04646 Vaccinium macrocarpon HOM05D003682 ORTHO05D004224 1.9e-189 666.8 709 58.4
Cc10_g15970 Coffea canephora HOM05D003682 ORTHO05D004224 3.2e-189 666.0 706 59.8
Oeu060952.2 Olea europaea HOM05D003682 ORTHO05D004224 6.0e-188 661.8 707 60.8
Migut.D00421 Erythranthe guttata HOM05D003682 ORTHO05D004224 1.3e-187 660.6 706 61.6
TAR381G0824 Trochodendron aralioides HOM05D003682 ORTHO05D004224 5.3e-184 648.7 710 59.3
Thecc.08G072000 Theobroma cacao HOM05D003682 ORTHO05D004224 9.0e-184 647.9 703 59.5
Cfa003049 Carpinus fangiana HOM05D003682 ORTHO05D004224 4.5e-183 645.6 702 53.4
SGA_v2.0_scaffold1G00611 Striga asiatica HOM05D003682 ORTHO05D004224 2.5e-181 639.8 702 61.8
Ciclev10000458m.g Citrus clementina HOM05D003682 ORTHO05D004224 2.7e-180 636.3 702 56.7
Rhsim07G0212400 Rhododendron simsii HOM05D003682 ORTHO05D004224 3.9e-179 632.5 765 46.8
DCAR_019320 Daucus carota HOM05D003682 ORTHO05D004224 5.7e-178 628.6 704 58.9
QL09p017991 Quercus lobata HOM05D003682 ORTHO05D004224 2.1e-177 626.7 708 58.8
TAR625G0645 Trochodendron aralioides HOM05D003682 ORTHO05D004224 2.0e-175 620.2 711 58.6
Ca_16009_v3 Cicer arietinum L. HOM05D003682 ORTHO05D004224 5.1e-171 605.5 703 55.5
Potri.006G225100 Populus trichocarpa HOM05D003682 ORTHO05D004224 2.8e-169 599.7 703 55.2
Manes.05G189900 Manihot esculenta HOM05D003682 ORTHO05D004224 1.1e-168 597.8 702 57.3
FAN18G1070 Fragaria x ananassa HOM05D003682 ORTHO05D004224 1.4e-168 597.4 706 55.4
CANSAT80G0637 Cannabis sativa HOM05D003682 ORTHO05D004224 5.3e-168 595.5 706 55.8
Sabra06G0174000 Salix brachista HOM05D003682 ORTHO05D004224 2.6e-167 593.2 704 56.2
CiPaw.08G056300 Carya illinoinensis HOM05D003682 ORTHO05D004224 1.0e-166 591.3 703 56.3
ClCG11G014620 Citrullus lanatus HOM05D003682 ORTHO05D004224 1.0e-166 591.3 723 54.1
Gohir.A06G031900 Gossypium hirsutum HOM05D003682 ORTHO05D004224 6.5e-166 588.6 704 56.7
Lj1g0007093 Lotus japonicus HOM05D003682 ORTHO05D004224 1.4e-165 587.4 703 54.3
Gohir.D04G010200 Gossypium hirsutum HOM05D003682 ORTHO05D004224 2.5e-165 586.6 704 56.5
Dinv44868 Davidia involucrata HOM05D003682 ORTHO05D004224 4.2e-165 585.9 634 62.3
Lsat_1_v5_gn_6_106460 Lactuca sativa HOM05D003682 ORTHO05D004224 1.2e-164 584.3 709 57.1
Oeu025829.1 Olea europaea HOM05D003682 ORTHO05D004224 1.2e-164 584.3 633 61.3
Gorai.012G012000 Gossypium raimondii HOM05D003682 ORTHO05D004224 2.1e-164 583.6 704 56.4
PSO782G3450 Papaver somniferum HOM05D003682 ORTHO05D004224 2.1e-164 583.6 706 50.1
Haze_22471 Corylus avellana HOM05D003682 ORTHO05D004224 2.7e-164 583.2 703 55.8
Gohir.A05G405400 Gossypium hirsutum HOM05D003682 ORTHO05D004224 2.7e-164 583.2 704 56.1
RcHm_v2.0_Chr7g0236311 Rosa chinensis HOM05D003682 ORTHO05D004224 1.8e-163 580.5 706 55.9
Duzib093G1710 Durio zibethinus HOM05D003682 ORTHO05D004224 3.0e-163 579.7 704 56.1
Gohir.D06G031000 Gossypium hirsutum HOM05D003682 ORTHO05D004224 3.0e-163 579.7 704 56.0
Gorai.010G034200 Gossypium raimondii HOM05D003682 ORTHO05D004224 5.1e-163 578.9 704 55.8
FvH4_5g35190 Fragaria vesca HOM05D003682 ORTHO05D004224 8.8e-163 578.2 706 53.3
Lalb_Chr17g0344591 Lupinus albus HOM05D003682 ORTHO05D004224 2.0e-162 577.0 702 56.0
FAN08G1971 Fragaria x ananassa HOM05D003682 ORTHO05D004224 1.4e-160 570.9 757 47.3
arahy.Tifrunner.gnm1.ann1.X4VYGK Arachis hypogaea HOM05D003682 ORTHO05D004224 1.8e-160 570.5 706 55.8
Aqoxy5G01369 Aquilegia oxysepala HOM05D003682 ORTHO05D004224 2.4e-160 570.1 707 49.4
arahy.Tifrunner.gnm1.ann1.6QC2QS Arachis hypogaea HOM05D003682 ORTHO05D004224 4.1e-160 569.3 706 55.7
CsaV3_6G052200 Cucumis sativus L. HOM05D003682 ORTHO05D004224 5.3e-160 568.9 719 53.4
TWI38G0994 Tripterygium wilfordii HOM05D003682 ORTHO05D004224 4.5e-159 565.8 713 51.9
MBI16_g12477_MAGBIO Magnolia biondii HOM05D003682 ORTHO05D004224 7.7e-159 565.1 675 57.2
Glyma.06G097500 Glycine max HOM05D003682 ORTHO05D004224 6.5e-158 562.0 703 55.8
PSO170G3281 Papaver somniferum HOM05D003682 ORTHO05D004224 1.1e-157 561.2 706 49.6
Sed0002040 Sechium edule HOM05D003682 ORTHO05D004224 1.1e-157 561.2 709 53.5
FAN13G2001 Fragaria x ananassa HOM05D003682 ORTHO05D004224 2.5e-157 560.1 729 51.2
Glyma.04G095800 Glycine max HOM05D003682 ORTHO05D004224 7.2e-157 558.5 702 54.7
MELO3C007092.2 Cucumis melo HOM05D003682 ORTHO05D004224 3.6e-156 556.2 747 51.4
Eucgr.F00427 Eucalyptus grandis HOM05D003682 ORTHO05D004224 6.1e-156 555.4 708 55.4
MD08G1200000 Malus domestica HOM05D003682 ORTHO05D004224 1.5e-154 550.8 705 50.6
HanXRQChr10g0277791 Helianthus annuus HOM05D003682 ORTHO05D004224 4.4e-154 549.3 713 55.1
Prupe.1G533400 Prunus persica HOM05D003682 ORTHO05D004224 4.4e-154 549.3 709 53.9
ECA246G3230 Erigeron canadensis HOM05D003682 ORTHO05D004224 1.7e-153 547.4 712 52.5
Sed0007462 Sechium edule HOM05D003682 ORTHO05D004224 2.8e-153 546.6 707 52.9
Medtr3g100110 Medicago truncatula HOM05D003682 ORTHO05D004224 2.4e-152 543.5 724 51.5
PGR042G1797 Punica granatum HOM05D003682 ORTHO05D004224 3.1e-152 543.1 704 53.1
Phvul.009G036000 Phaseolus vulgaris HOM05D003682 ORTHO05D004224 4.5e-151 539.3 706 53.3
Psat7g218480 Pisum sativum HOM05D003682 ORTHO05D004224 4.0e-147 526.2 705 53.6
VMungo1309G2518 Vigna mungo HOM05D003682 ORTHO05D004224 5.7e-146 522.3 736 51.0
Nn5g27243 Nelumbo nucifera HOM05D003682 ORTHO05D004224 2.2e-145 520.4 648 57.3
Carub.0007s1658 Capsella rubella HOM05D003682 ORTHO05D004224 2.0e-143 513.8 705 51.6
BraA01t01520Z Brassica rapa HOM05D003682 ORTHO05D004224 7.7e-143 511.9 704 54.4
AUR62042881 Chenopodium quinoa HOM05D003682 ORTHO05D004224 1.0e-142 511.5 705 49.5
BolC7t45853H Brassica oleracea HOM05D003682 ORTHO05D004224 1.3e-142 511.1 708 52.3
AL7G28730 Arabidopsis lyrata HOM05D003682 ORTHO05D004224 2.2e-142 510.4 704 52.1
TPR.G6373 Trifolium pratense HOM05D003682 ORTHO05D004224 2.2e-142 510.4 707 50.8
Sp7g22480 Schrenkiella parvula HOM05D003682 ORTHO05D004224 8.5e-142 508.4 704 52.4
EL10Ac6g13977 Beta vulgaris HOM05D003682 ORTHO05D004224 1.4e-139 501.1 742 47.6
C07p53610 Brassica napus HOM05D003682 ORTHO05D004224 3.0e-139 500.0 708 52.0
BcaC06g32881 Brassica carinata HOM05D003682 ORTHO05D004224 1.5e-138 497.7 708 51.4
A03p55320 Brassica napus HOM05D003682 ORTHO05D004224 2.0e-138 497.3 708 51.1
BraA03t14591Z Brassica rapa HOM05D003682 ORTHO05D004224 5.7e-138 495.7 705 51.8
ATR0767G054 Amborella trichopoda HOM05D003682 ORTHO05D004224 7.5e-138 495.4 714 51.1
Aa31LG4G9590 Aethionema arabicum HOM05D003682 ORTHO05D004224 2.8e-137 493.4 708 50.7
Thhalv10024594m.g Eutrema salsugineum HOM05D003682 ORTHO05D004224 4.8e-137 492.7 707 51.1
THA.LOC104804716 Tarenaya hassleriana HOM05D003682 ORTHO05D000002 6.3e-137 492.3 707 51.5
BolC1t01908H Brassica oleracea HOM05D003682 ORTHO05D004224 1.8e-136 490.7 704 51.1
C01p19800 Brassica napus HOM05D003682 ORTHO05D004224 3.1e-136 490.0 704 50.9
A01p15860 Brassica napus HOM05D003682 ORTHO05D004224 5.4e-136 489.2 704 53.3
AT4G24490 Arabidopsis thaliana HOM05D003682 ORTHO05D004224 1.2e-135 488.0 703 51.6
SalBow4G2331 Salvia bowleyana HOM05D003682 ORTHO05D004224 4.5e-135 486.1 518 60.8
Sc26g0002240 Simmondsia chinensis HOM05D003682 ORTHO05D004224 2.9e-134 483.4 633 54.0
CARHR231880 Cardamine hirsuta HOM05D003682 ORTHO05D004224 4.2e-133 479.6 705 51.9
Hund17277 Selenicereus undatus HOM05D003682 ORTHO05D004224 1.0e-131 474.9 707 51.2
CSS0003141 Camellia sinensis var. sinensis HOM05D003682 ORTHO05D004224 2.0e-130 470.7 521 50.7
CSS0030960 Camellia sinensis var. sinensis HOM05D003682 ORTHO05D004224 1.5e-125 454.5 518 56.9
HPP92_013453 Vanilla planifolia HOM05D003682 ORTHO05D004224 6.1e-124 449.1 703 41.7
AL3G20810 Arabidopsis lyrata HOM05D003682 ORTHO05D004224 8.9e-123 445.3 711 45.0
FAN04G1105 Fragaria x ananassa HOM05D003682 ORTHO05D004224 2.6e-122 443.7 708 39.0
Os06g0677500 Oryza sativa ssp. japonica HOM05D003682 ORTHO05D004224 4.1e-120 436.4 708 41.4
Zm00001eb224710 Zea mays HOM05D003682 ORTHO05D004224 4.6e-119 433.0 707 40.7
SEGI_28473 Sequoiadendron giganteum HOM05D003682 ORTHO05D004224 1.2e-116 424.9 728 46.7
Carub.0003s1254 Capsella rubella HOM05D003682 ORTHO05D004224 1.1e-115 421.8 707 47.8
CDE02G0915 Ceratophyllum demersum HOM05D003682 ORTHO05D004224 3.1e-115 420.2 710 39.3
Zm00001eb273870 Zea mays HOM05D003682 ORTHO05D004224 3.2e-112 410.2 707 38.5
Atru.chr13.999 Acer truncatum HOM05D003682 ORTHO05D004224 1.2e-111 408.3 478 60.3
AUR62037113 Chenopodium quinoa HOM05D003682 ORTHO05D004224 1.1e-109 401.7 534 43.3
BcaC09g50863 Brassica carinata HOM05D003682 ORTHO05D004224 1.1e-107 395.2 579 51.8
AT5G41820 Arabidopsis thaliana HOM05D003682 ORTHO05D004224 4.9e-105 386.3 729 41.6
CDE01G0832 Ceratophyllum demersum HOM05D003682 ORTHO05D004224 6.6e-102 375.9 633 50.4
MD15G1387100 Malus domestica HOM05D003682 ORTHO05D004224 6.2e-100 369.4 526 50.4
AL7G47420 Arabidopsis lyrata HOM05D003682 ORTHO05D004224 1.1e-99 368.6 731 38.3
SHI09562 Sapria himalayana HOM05D003682 ORTHO05D000023 5.2e-91 339.7 534 44.6
Mapoly0151s0003 Marchantia polymorpha HOM05D003682 ORTHO05D004224 1.8e-83 314.7 731 44.2
SEGI_15297 Sequoiadendron giganteum HOM05D003682 ORTHO05D004224 1.9e-80 304.7 546 39.2
CSS0013415 Camellia sinensis var. sinensis HOM05D003682 ORTHO05D004224 1.1e-77 295.4 480 38.3
GSVIVG01009191001 Vitis vinifera HOM05D003682 ORTHO05D004224 1.5e-77 295.0 313 56.9
HanXRQChr08g0233491 Helianthus annuus HOM05D003682 ORTHO05D004224 1.9e-77 294.7 424 53.8
Prupe.1G572600 Prunus persica HOM05D003682 ORTHO05D004224 6.9e-75 286.2 470 42.6
CSS0029858 Camellia sinensis var. sinensis HOM05D003682 ORTHO05D004224 4.5e-74 283.5 486 36.6
Lalb_Chr04g0252801 Lupinus albus HOM05D003682 ORTHO05D004224 7.6e-66 256.1 258 69.0
Glyma.02G123302 Glycine max HOM05D003682 ORTHO05D004224 8.4e-65 252.7 355 41.7
GSVIVG01009190001 Vitis vinifera HOM05D003682 ORTHO05D004224 4.6e-63 246.9 255 73.3
SEGI_17476 Sequoiadendron giganteum HOM05D003682 ORTHO05D004224 2.6e-58 231.1 435 36.8
unitig_0.g155 Utricularia gibba HOM05D003682 ORTHO05D004224 2.5e-56 224.6 273 52.0
ECA232G1558 Erigeron canadensis HOM05D003682 ORTHO05D004224 7.9e-55 219.5 255 54.5
SalBow4G1793 Salvia bowleyana HOM05D003682 ORTHO05D004224 7.2e-48 196.4 212 57.5
COL.COLO4_35257 Corchorus olitorius HOM05D003682 ORTHO05D004224 8.2e-44 183.0 125 71.2
AagrBONN_evm.TU.Sc2ySwM_117.1254 Anthoceros agrestis HOM05D003682 ORTHO05D004224 2.7e-39 167.9 247 39.7
Cpa.g.c39765 Carica papaya HOM05D003682 ORTHO05D004224 1.0e-38 166.0 202 46.5
BcaNung04806 Brassica carinata HOM05D003682 ORTHO05D004224 3.0e-38 164.5 123 66.7
CBR_g19613 Chara braunii HOM05D003682 ORTHO05D004224 3.0e-38 164.5 712 29.2
Actinidia36899 Actinidia chinensis HOM05D003682 ORTHO05D004224 2.0e-34 151.8 162 61.1
Pp3c1_10430 Physcomitrium patens HOM05D003682 ORTHO05D004224 3.2e-32 144.4 518 29.3
SHI09561 Sapria himalayana HOM05D000105 ORTHO05D000023 1.6e-31 142.1 123 60.2
SEGI_24080 Sequoiadendron giganteum HOM05D003682 ORTHO05D004224 1.4e-30 139.0 125 56.0
Cpa.g.c34457.1 Carica papaya HOM05D003682 ORTHO05D004224 1.8e-30 138.7 133 57.1
HanXRQChr08g0233481 Helianthus annuus HOM05D003682 ORTHO05D004224 2.3e-30 138.3 140 65.7
HPP92_013470 Vanilla planifolia HOM05D003682 ORTHO05D004224 1.2e-29 136.0 209 48.3
unitig_0.g156 Utricularia gibba HOM05D003682 ORTHO05D004224 2.8e-28 131.3 109 58.7
CSS0023594 Camellia sinensis var. sinensis HOM05D003682 ORTHO05D004224 2.2e-25 121.7 98 64.3
CSS0005132 Camellia sinensis var. sinensis HOM05D003682 ORTHO05D004224 3.8e-25 120.9 96 64.6
SMO307G0051 Selaginella moellendorffii HOM05D003682 ORTHO05D004224 2.5e-24 118.2 125 48.0
Dinv42603 Davidia involucrata HOM05D003682 ORTHO05D004224 4.2e-24 117.5 132 49.2
BcaB06g27567 Brassica carinata HOM05D003682 ORTHO05D004224 2.1e-23 115.2 115 54.8
BcaNung05639 Brassica carinata HOM05D006679 ORTHO05D008461 2.0e-21 108.6 146 41.1
EL10Ac3g05976 Beta vulgaris HOM05D003682 ORTHO05D004224 4.1e-19 100.9 71 66.2
Aqoxy2G00859 Aquilegia oxysepala HOM05D003682 ORTHO05D004224 2.7e-18 98.2 124 41.1
CAN.G475.12 Capsicum annuum HOM05D003682 ORTHO05D004224 4.5e-18 97.4 53 83.0
CSS0014234 Camellia sinensis var. sinensis HOM05D003682 ORTHO05D004224 1.3e-17 95.9 95 51.6
CSS0003380 Camellia sinensis var. sinensis HOM05D003682 ORTHO05D004224 8.6e-17 93.2 95 51.6
CSS0026243 Camellia sinensis var. sinensis HOM05D003682 ORTHO05D004224 4.2e-16 90.9 95 50.5
CSS0040590 Camellia sinensis var. sinensis HOM05D003682 ORTHO05D004224 4.2e-16 90.9 95 50.5
Psat5g049320 Pisum sativum HOM05D003682 ORTHO05D004224 3.6e-15 87.8 163 37.4
CSS0042448 Camellia sinensis var. sinensis HOM05D003682 ORTHO05D004224 8.0e-15 86.7 95 50.5
Lalb_Chr04g0252781 Lupinus albus HOM05D003682 ORTHO05D004224 3.0e-14 84.7 74 58.1
PGR102G2117 Punica granatum HOM05D003682 ORTHO05D004224 4.0e-14 84.3 283 28.3
Cre07.g339350 Chlamydomonas reinhardtii HOM05D003682 ORTHO05D004224 6.8e-14 83.6 125 38.4
CSS0000677 Camellia sinensis var. sinensis HOM05D003682 ORTHO05D004224 4.4e-13 80.9 95 48.4
MCO12G062 Micromonas commoda HOM05D003682 ORTHO05D004224 4.4e-13 80.9 295 28.1
CSS0029231 Camellia sinensis var. sinensis HOM05D003682 ORTHO05D004224 1.3e-12 79.3 95 47.4
CSS0006921 Camellia sinensis var. sinensis HOM05D003682 ORTHO05D004224 2.8e-12 78.2 95 46.3
PRCOL_00003254 Prasinoderma coloniale HOM05D003682 ORTHO05D004224 4.9e-12 77.4 259 25.9
CSS0029631 Camellia sinensis var. sinensis HOM05D003682 ORTHO05D004224 8.3e-12 76.6 65 60.0
CSS0029499 Camellia sinensis var. sinensis HOM05D003682 ORTHO05D004224 1.8e-11 75.5 65 60.0
TAR628G0387 Trochodendron aralioides HOM05D003682 ORTHO05D004224 3.1e-11 74.7 45 66.7
CSS0045772 Camellia sinensis var. sinensis HOM05D003682 ORTHO05D004224 2.0e-10 72.0 65 56.9
CSS0020196 Camellia sinensis var. sinensis HOM05D003682 ORTHO05D004224 2.7e-10 71.6 65 58.5
CSS0037747 Camellia sinensis var. sinensis HOM05D003682 ORTHO05D004224 2.7e-10 71.6 65 58.5
CSS0037736 Camellia sinensis var. sinensis HOM05D003682 ORTHO05D004224 4.5e-10 70.9 65 56.9
Ah.04g150940 Amaranthus hybridus HOM05D007488 ORTHO05D009461 2.1e-07 62.0 30 86.7
arahy.Tifrunner.gnm1.ann1.R6K80C Arachis hypogaea HOM05D003682 ORTHO05D004224 2.1e-07 62.0 136 37.5
Lsat_1_v5_gn_3_58200 Lactuca sativa HOM05D003682 ORTHO05D004224 2.1e-07 62.0 74 45.9
Prupe.1G572700 Prunus persica HOM05D003682 ORTHO05D004224 3.6e-07 61.2 59 47.5
arahy.Tifrunner.gnm1.ann1.H7L4UV Arachis hypogaea HOM05D003682 ORTHO05D004224 1.0e-06 59.7 79 51.9


User provided reference genes

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