Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGSC0003DMG400007705 Solanum tuberosum HOM05D002824 ORTHO05D008771 1.5e-75 286.2 156 100.0
Sopen12g033130 Solanum pennellii HOM05D002824 ORTHO05D008771 4.3e-70 268.1 157 94.3
CAN.G767.42 Capsicum annuum HOM05D002824 ORTHO05D008771 1.8e-68 262.7 156 85.3
Nitab4.5_0000676g0190 Nicotiana tabacum HOM05D002824 ORTHO05D008771 2.4e-68 262.3 157 86.6
Solyc12g098350.1 Solanum lycopersicum HOM05D002824 ORTHO05D008771 2.4e-68 262.3 157 93.0
Nitab4.5_0005206g0060 Nicotiana tabacum HOM05D002824 ORTHO05D008771 6.9e-68 260.8 157 86.0
Peaxi162Scf00652g00418 Petunia axillaris HOM05D002824 ORTHO05D008771 8.4e-66 253.8 156 82.1
Manes.10G116800 Manihot esculenta HOM05D002824 ORTHO05D008771 2.5e-30 136.0 71 83.1
Manes.07G025200 Manihot esculenta HOM05D002824 ORTHO05D008771 4.3e-30 135.2 74 79.7
Lj3g0012155 Lotus japonicus HOM05D002824 ORTHO05D008771 9.7e-30 134.0 71 83.1
arahy.Tifrunner.gnm1.ann1.RFE8PP Arachis hypogaea HOM05D002824 ORTHO05D008771 1.7e-29 133.3 71 83.1
Potri.006G241100 Populus trichocarpa HOM05D002824 ORTHO05D008771 1.7e-29 133.3 69 84.1
Lalb_Chr01g0006541 Lupinus albus HOM05D002824 ORTHO05D008771 2.2e-29 132.9 71 81.7
PGR042G2139 Punica granatum HOM05D002824 ORTHO05D008771 2.8e-29 132.5 75 81.3
QL08p021656 Quercus lobata HOM05D002824 ORTHO05D008771 2.8e-29 132.5 124 54.8
TPR.G40092 Trifolium pratense HOM05D002824 ORTHO05D008771 4.8e-29 131.7 71 81.7
ClCG11G018100 Citrullus lanatus HOM05D002824 ORTHO05D008771 6.3e-29 131.3 71 78.9
Eucgr.G00343 Eucalyptus grandis HOM05D002824 ORTHO05D008771 6.3e-29 131.3 75 81.3
Potri.018G038900 Populus trichocarpa HOM05D002824 ORTHO05D008771 6.3e-29 131.3 138 51.4
CiPaw.11G169000 Carya illinoinensis HOM05D002824 ORTHO05D008771 1.1e-28 130.6 75 76.0
Phvul.003G183400 Phaseolus vulgaris HOM05D002824 ORTHO05D008771 1.4e-28 130.2 71 81.7
Sabra06G0188500 Salix brachista HOM05D002824 ORTHO05D008771 1.4e-28 130.2 69 82.6
VMungo1215G1991 Vigna mungo HOM05D002824 ORTHO05D008771 1.4e-28 130.2 71 81.7
Medtr8g061130 Medicago truncatula HOM05D002824 ORTHO05D008771 1.8e-28 129.8 71 78.9
Glyma.17G080200 Glycine max HOM05D002824 ORTHO05D008771 3.1e-28 129.0 71 80.3
Psat4g172920 Pisum sativum HOM05D002824 ORTHO05D008771 3.1e-28 129.0 76 76.3
HanXRQChr00c0394g0574551 Helianthus annuus HOM05D002824 ORTHO05D008771 5.3e-28 128.3 70 81.4
HanXRQChr00c0593g0576361 Helianthus annuus HOM05D002824 ORTHO05D008771 5.3e-28 128.3 70 81.4
HanXRQChr00c0925g0577891 Helianthus annuus HOM05D002824 ORTHO05D008771 5.3e-28 128.3 70 81.4
HanXRQChr01g0020221 Helianthus annuus HOM05D002824 ORTHO05D008771 5.3e-28 128.3 70 81.4
HanXRQChr04g0127491 Helianthus annuus HOM05D002824 ORTHO05D008771 5.3e-28 128.3 70 81.4
HanXRQChr05g0152571 Helianthus annuus HOM05D002824 ORTHO05D008771 5.3e-28 128.3 70 81.4
HanXRQChr10g0284381 Helianthus annuus HOM05D002824 ORTHO05D008771 5.3e-28 128.3 70 81.4
HanXRQChr10g0318061 Helianthus annuus HOM05D002824 ORTHO05D008771 5.3e-28 128.3 70 81.4
HanXRQChr11g0321091 Helianthus annuus HOM05D002824 ORTHO05D008771 5.3e-28 128.3 70 81.4
HanXRQChr11g0326961 Helianthus annuus HOM05D002824 ORTHO05D008771 5.3e-28 128.3 70 81.4
HanXRQChr12g0369851 Helianthus annuus HOM05D002824 ORTHO05D008771 5.3e-28 128.3 70 81.4
HanXRQChr15g0486561 Helianthus annuus HOM05D002824 ORTHO05D008771 5.3e-28 128.3 70 81.4
HanXRQCPg0580181 Helianthus annuus HOM05D002824 ORTHO05D008771 5.3e-28 128.3 70 81.4
Ciclev10022760m.g Citrus clementina HOM05D002824 ORTHO05D008771 6.9e-28 127.9 71 80.3
DCAR_032520 Daucus carota HOM05D002824 ORTHO05D008771 6.9e-28 127.9 70 80.0
Hma1.2p1_0818F.1_g223320 Hydrangea macrophylla HOM05D002824 ORTHO05D008771 6.9e-28 127.9 69 82.6
MELO3C016702.2 Cucumis melo HOM05D002824 ORTHO05D008771 2.0e-27 126.3 71 77.5
CsaV3_4G033730 Cucumis sativus L. HOM05D002824 ORTHO05D008771 2.6e-27 125.9 75 72.0
PSO548G0003 Papaver somniferum HOM05D002824 ORTHO05D008771 2.6e-27 125.9 70 78.6
Aqoxy7G01548 Aquilegia oxysepala HOM05D002824 ORTHO05D008771 3.4e-27 125.6 74 73.0
Sed0016999 Sechium edule HOM05D002824 ORTHO05D008771 3.4e-27 125.6 69 79.7
Atru.chr1.2540 Acer truncatum HOM05D002824 ORTHO05D008771 4.5e-27 125.2 67 82.1
Sc25g0002050 Simmondsia chinensis HOM05D000964 ORTHO05D001488 4.5e-27 125.2 70 80.0
FAN11G2965 Fragaria x ananassa HOM05D002824 ORTHO05D008771 7.7e-27 124.4 90 64.4
Glyma.05G019600 Glycine max HOM05D002824 ORTHO05D008771 7.7e-27 124.4 71 77.5
Atru.chr9.2077 Acer truncatum HOM05D002824 ORTHO05D008771 1.3e-26 123.6 130 52.3
FAN21G0827 Fragaria x ananassa HOM05D002824 ORTHO05D008771 2.9e-26 122.5 90 63.3
Prupe.4G182300 Prunus persica HOM05D002824 ORTHO05D008771 5.0e-26 121.7 85 63.5
Ah.10g027210 Amaranthus hybridus HOM05D000964 ORTHO05D001488 8.5e-26 120.9 70 77.1
Ah.10g027340 Amaranthus hybridus HOM05D000964 ORTHO05D001488 8.5e-26 120.9 70 77.1
Ah.10g027460 Amaranthus hybridus HOM05D000964 ORTHO05D001488 8.5e-26 120.9 70 77.1
EL10Ac5g11668 Beta vulgaris HOM05D002824 ORTHO05D008771 8.5e-26 120.9 70 77.1
Ah.10g028980 Amaranthus hybridus HOM05D000964 ORTHO05D001488 3.2e-25 119.0 70 77.1
Gohir.A12G232300 Gossypium hirsutum HOM05D002824 ORTHO05D008771 9.4e-25 117.5 69 73.9
Gohir.D12G235100 Gossypium hirsutum HOM05D002824 ORTHO05D008771 9.4e-25 117.5 69 73.9
Gorai.008G251300 Gossypium raimondii HOM05D002824 ORTHO05D008771 9.4e-25 117.5 69 73.9
Thecc.03G290100 Theobroma cacao HOM05D002824 ORTHO05D008771 9.4e-25 117.5 69 73.9
Lsat_1_v5_gn_2_136980 Lactuca sativa HOM05D002824 ORTHO05D008771 2.1e-24 116.3 73 72.6
Duzib205G1549 Durio zibethinus HOM05D002824 ORTHO05D008771 2.7e-24 115.9 69 72.5
COL.COLO4_21755 Corchorus olitorius HOM05D002824 ORTHO05D008771 3.6e-24 115.5 74 70.3
Sc16g0004450 Simmondsia chinensis HOM05D002824 ORTHO05D008771 6.1e-24 114.8 70 75.7
Cpa.g.sc321.5 Carica papaya HOM05D002824 ORTHO05D008771 7.9e-24 114.4 62 85.5
Duzib084G0020 Durio zibethinus HOM05D002824 ORTHO05D008771 2.3e-23 112.8 69 71.0
MD11G1244000 Malus domestica HOM05D002824 ORTHO05D008771 3.0e-23 112.5 69 69.6
Oeu054718.1 Olea europaea HOM05D002824 ORTHO05D008771 8.8e-23 110.9 70 72.9
Prupe.4G182400 Prunus persica HOM05D002824 ORTHO05D008771 3.3e-22 109.0 69 69.6
HanXRQChr02g0052601 Helianthus annuus HOM05D002824 ORTHO05D008771 1.3e-21 107.1 58 81.0
Aa31LG9G11000 Aethionema arabicum HOM05D002824 ORTHO05D008771 1.7e-21 106.7 62 77.4
THA.LOC104814832 Tarenaya hassleriana HOM05D002824 ORTHO05D008771 2.2e-21 106.3 62 79.0
Medtr0002s0770 Medicago truncatula HOM05D002824 ORTHO05D008771 2.8e-21 105.9 66 75.8
AL6G45360 Arabidopsis lyrata HOM05D002824 ORTHO05D008771 1.1e-20 104.0 62 74.2
AT4G11175 Arabidopsis thaliana HOM05D002824 ORTHO05D008771 1.1e-20 104.0 62 74.2
BcaB01g01596 Brassica carinata HOM05D002824 ORTHO05D008771 1.1e-20 104.0 62 74.2
BcaC04g21113 Brassica carinata HOM05D002824 ORTHO05D008771 1.1e-20 104.0 62 74.2
C09p35540 Brassica napus HOM05D002824 ORTHO05D008771 1.1e-20 104.0 62 74.2
BolC9t56393H Brassica oleracea HOM05D002824 ORTHO05D008771 1.1e-20 104.0 62 74.2
Carub.0006s3001 Capsella rubella HOM05D002824 ORTHO05D008771 1.1e-20 104.0 62 74.2
CARHR255400 Cardamine hirsuta HOM05D002824 ORTHO05D008771 1.1e-20 104.0 62 74.2
Thhalv10029051m.g Eutrema salsugineum HOM05D002824 ORTHO05D008771 1.1e-20 104.0 62 74.2
Sp6g06240 Schrenkiella parvula HOM05D002824 ORTHO05D008771 1.1e-20 104.0 62 74.2
BcaB05g23855 Brassica carinata HOM05D002824 ORTHO05D008771 1.4e-20 103.6 62 72.6
A09p28030 Brassica napus HOM05D002824 ORTHO05D008771 1.4e-20 103.6 62 72.6
BraA09t38371Z Brassica rapa HOM05D002824 ORTHO05D008771 1.4e-20 103.6 62 72.6
SMO358G0035 Selaginella moellendorffii HOM05D002824 ORTHO05D008771 3.1e-20 102.4 63 76.2
Lsat_1_v5_gn_2_92080 Lactuca sativa HOM05D000964 ORTHO05D004047 1.2e-19 100.5 75 64.0
Lsat_1_v5_gn_3_81720 Lactuca sativa HOM05D000964 ORTHO05D003870 1.2e-19 100.5 75 64.0
Lsat_1_v5_gn_6_69061 Lactuca sativa HOM05D000964 ORTHO05D004047 1.2e-19 100.5 75 64.0
Lsat_1_v5_gn_8_146180 Lactuca sativa HOM05D000964 ORTHO05D003870 1.2e-19 100.5 75 64.0
Lsat_1_v5_gn_0_41600 Lactuca sativa HOM05D000964 ORTHO05D004047 2.0e-19 99.8 56 78.6
Ca_24278_v3 Cicer arietinum L. HOM05D002824 ORTHO05D008771 1.3e-18 97.1 52 78.8
Hund04057 Selenicereus undatus HOM05D002824 ORTHO05D007162 2.9e-18 95.9 68 66.2
Hund08802 Selenicereus undatus HOM05D002824 ORTHO05D007162 2.9e-18 95.9 68 66.2
Hund12527 Selenicereus undatus HOM05D002824 ORTHO05D007162 2.9e-18 95.9 68 66.2
Hund19320 Selenicereus undatus HOM05D002824 ORTHO05D007162 2.9e-18 95.9 68 66.2
Hund27962 Selenicereus undatus HOM05D002824 ORTHO05D007162 2.9e-18 95.9 68 66.2
Hund27985 Selenicereus undatus HOM05D002824 ORTHO05D007162 2.9e-18 95.9 68 66.2
Hund28109 Selenicereus undatus HOM05D002824 ORTHO05D007162 2.9e-18 95.9 68 66.2
Hund28268 Selenicereus undatus HOM05D002824 ORTHO05D007162 2.9e-18 95.9 68 66.2
Hund28459 Selenicereus undatus HOM05D002824 ORTHO05D007162 2.9e-18 95.9 68 66.2
Hund28519 Selenicereus undatus HOM05D002824 ORTHO05D007162 2.9e-18 95.9 68 66.2
Hund28529 Selenicereus undatus HOM05D002824 ORTHO05D007162 2.9e-18 95.9 68 66.2
Hund28632 Selenicereus undatus HOM05D002824 ORTHO05D007162 2.9e-18 95.9 68 66.2
Hund28678 Selenicereus undatus HOM05D002824 ORTHO05D007162 2.9e-18 95.9 68 66.2
Hund28746 Selenicereus undatus HOM05D002824 ORTHO05D007162 2.9e-18 95.9 68 66.2
Hund28759 Selenicereus undatus HOM05D002824 ORTHO05D007162 2.9e-18 95.9 68 66.2
Hund28778 Selenicereus undatus HOM05D002824 ORTHO05D007162 2.9e-18 95.9 68 66.2
Hund28846 Selenicereus undatus HOM05D002824 ORTHO05D007162 2.9e-18 95.9 68 66.2
Hund29022 Selenicereus undatus HOM05D002824 ORTHO05D007162 2.9e-18 95.9 68 66.2
Hund29036 Selenicereus undatus HOM05D002824 ORTHO05D007162 2.9e-18 95.9 68 66.2
Hund29217 Selenicereus undatus HOM05D002824 ORTHO05D007162 2.9e-18 95.9 68 66.2
Hund29505 Selenicereus undatus HOM05D002824 ORTHO05D007162 2.9e-18 95.9 68 66.2
Hund29525 Selenicereus undatus HOM05D002824 ORTHO05D007162 2.9e-18 95.9 68 66.2
Hund29537 Selenicereus undatus HOM05D002824 ORTHO05D007162 2.9e-18 95.9 68 66.2
Hund29554 Selenicereus undatus HOM05D002824 ORTHO05D007162 2.9e-18 95.9 68 66.2
Hund29593 Selenicereus undatus HOM05D002824 ORTHO05D007162 2.9e-18 95.9 68 66.2
Hund29605 Selenicereus undatus HOM05D002824 ORTHO05D007162 2.9e-18 95.9 68 66.2
Hund29612 Selenicereus undatus HOM05D002824 ORTHO05D007162 2.9e-18 95.9 68 66.2
Hund29682 Selenicereus undatus HOM05D002824 ORTHO05D007162 2.9e-18 95.9 68 66.2
Hund29957 Selenicereus undatus HOM05D002824 ORTHO05D007162 2.9e-18 95.9 68 66.2
Hund30031 Selenicereus undatus HOM05D002824 ORTHO05D007162 2.9e-18 95.9 68 66.2
Hund30069 Selenicereus undatus HOM05D002824 ORTHO05D008771 2.9e-18 95.9 68 66.2
Hund30272 Selenicereus undatus HOM05D002824 ORTHO05D007162 2.9e-18 95.9 68 66.2
Hund30490 Selenicereus undatus HOM05D002824 ORTHO05D007162 2.9e-18 95.9 68 66.2
Hund30495 Selenicereus undatus HOM05D002824 ORTHO05D007162 2.9e-18 95.9 68 66.2
Hund30544 Selenicereus undatus HOM05D002824 ORTHO05D007162 2.9e-18 95.9 68 66.2
Lsat_1_v5_gn_5_50421 Lactuca sativa HOM05D000964 ORTHO05D003870 3.8e-18 95.5 56 76.8
FvH4_3g20270 Fragaria vesca HOM05D002824 ORTHO05D008771 5.0e-18 95.1 70 64.3
FAN16G1250 Fragaria x ananassa HOM05D002824 ORTHO05D008771 5.0e-18 95.1 70 64.3
RcHm_v2.0_Chr5g0034161 Rosa chinensis HOM05D002824 ORTHO05D008771 5.0e-18 95.1 70 64.3
Hund27578 Selenicereus undatus HOM05D002824 ORTHO05D007162 1.1e-17 94.0 68 64.7
FAN25G0310 Fragaria x ananassa HOM05D002824 ORTHO05D008771 1.9e-17 93.2 70 62.9
Sc20g0004270 Simmondsia chinensis HOM05D000964 ORTHO05D001488 2.5e-17 92.8 64 68.8
PSO782G5188 Papaver somniferum HOM05D002824 ORTHO05D008771 2.1e-16 89.7 68 66.2
Peaxi162Scf00299g00114 Petunia axillaris HOM05D002824 ORTHO05D007162 3.9e-15 85.5 68 64.7
Ca_29478_v3 Cicer arietinum L. HOM05D002824 ORTHO05D008771 8.8e-15 84.3 72 50.0
Hund26844 Selenicereus undatus HOM05D000964 ORTHO05D001488 1.1e-14 84.0 63 61.9
Hund29164 Selenicereus undatus HOM05D002824 ORTHO05D007162 1.5e-14 83.6 62 62.9
Sc20g0003000 Simmondsia chinensis HOM05D002824 ORTHO05D008771 2.0e-14 83.2 49 75.5
Cc09_g05310 Coffea canephora HOM05D002824 ORTHO05D008771 2.6e-14 82.8 74 54.1
PRCOL_00002279 Prasinoderma coloniale HOM05D002824 ORTHO05D008771 5.3e-12 75.1 80 45.0
vmacro22400 Vaccinium macrocarpon HOM05D000964 ORTHO05D001488 1.6e-11 73.6 122 37.7
vmacro22425 Vaccinium macrocarpon HOM05D000964 ORTHO05D001488 1.6e-11 73.6 122 37.7
Hund31501 Selenicereus undatus HOM05D002824 ORTHO05D007162 2.0e-11 73.2 54 63.0
Cre04.g218700 Chlamydomonas reinhardtii HOM05D002824 ORTHO05D008771 1.0e-10 70.9 66 47.0
RcHm_v2.0_CPg0501881 Rosa chinensis HOM05D002824 ORTHO05D008771 1.7e-10 70.1 48 62.5
MELO3C027648.2 Cucumis melo HOM05D002824 ORTHO05D008771 2.5e-09 66.2 72 54.2
FAN10G1907 Fragaria x ananassa HOM05D002824 ORTHO05D005776 5.5e-09 65.1 66 50.0
Nn002s41361 Nelumbo nucifera HOM05D002824 ORTHO05D008771 7.2e-09 64.7 34 82.4
Nn021s41523 Nelumbo nucifera HOM05D002824 ORTHO05D008771 7.2e-09 64.7 34 82.4
Nn070s42371 Nelumbo nucifera HOM05D002824 ORTHO05D008771 7.2e-09 64.7 34 82.4
FAN22G0293 Fragaria x ananassa HOM05D002824 ORTHO05D008771 4.7e-08 62.0 66 48.5
Nitab4.5_0006114g0040 Nicotiana tabacum HOM05D000388 ORTHO05D009867 8.0e-08 61.2 37 78.4
ClCG00G003150 Citrullus lanatus HOM05D002824 ORTHO05D008771 1.0e-07 60.8 46 63.0
MBI15_g40528_MAGBIO Magnolia biondii HOM05D002824 ORTHO05D008771 1.4e-07 60.5 37 67.6
Nitab4.5_0000173g0110 Nicotiana tabacum HOM05D002824 ORTHO05D007162 1.2e-06 57.4 33 81.8
MELO3C032365.2 Cucumis melo HOM05D002824 ORTHO05D008771 1.5e-06 57.0 72 48.6
ClCG11G017170 Citrullus lanatus HOM05D002824 ORTHO05D008771 3.3e-06 55.8 39 66.7
MELO3C033566.2 Cucumis melo HOM05D002824 ORTHO05D008771 3.3e-06 55.8 71 49.3


User provided reference genes

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